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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Parasitism of cassava mealybug by Anagyrus lopezi: Effects of varying host and parasitoid densities Muhammad Zainal Fanani; Aunu Rauf; Nina Maryana; Ali Nurmansyah; Dadan Hindayana
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211064

Abstract

Abstract. Fanani MZ, Rauf A, Maryana N, Nurmansyah A, Hindayana D. 2020. Parasitism of cassava mealybug by Anagyrus lopezi: Effects of varying host and parasitoid densities. Biodiversitas 21: 4973-4980. The solitary endoparasitoid Anagyrus lopezi (De Santis) (Hymenoptera: Encyrtidae) was introduced into Indonesia in 2014 to control the cassava mealybug, Phenacoccus manihoti Matile-Ferrero (Hemiptera: Pseudococcidae). The objectives of this study were to understand the influence of host and parasitoid densities on functional response and mutual interference of the parasitoid, by altering either the host or parasitoid density while keeping the other constant. The effects of host and parasitoid densities on parasitism, superparasitism, progeny production, and sex ratio were also assessed. Logistic regression was used to determine the shape of the functional response. Nonlinear least-squares regression was used to estimate the attack rate (a) and handling time (Th). Nicholson’s model and linear regression were used to determine per capita searching efficiency and interference coefficient, respectively. The logistic regression results suggested a Holling type II functional response to changing host densities, with an estimated attack rate (a) and handling time (Th) were 0.037 h-1 and 1.19 h, respectively. The estimated maximum number of mealybugs parasitized over 24-h period was 20.2 mealybugs. The wasp-mealybug ratio and offspring production increased significantly from 1:2 to 1:100 and from 1.35 to 10.45, respectively. However, the per capita number of parasitization decreased significantly from 14.20 to 4.37, with the increase in parasitoid density from 1 to 8. Searching efficiency of the parasitoid decreased significantly with increasing parasitoid density, with a mutual interference constant (m) of -0.52.
Abundance and characterization of microorganisms isolated from oil palm empty fruit bunches waste under aerobic, anaerobic, and facultative anaerobic conditions DERMIYATI DERMIYATI; RADIX SUHARJO; MARELI TELAUMBANUA; RULLY YOSITA; ANGGI WINANDA SARI; ANIS PUJI ANDAYANI
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210936

Abstract

Abstract. Dermiyati, Suharjo R, Telaumbanua M, Yosita R, Sari AW, Andayani AP. 2020. Abundance and characterization of microorganisms isolated from oil palm empty fruit bunches waste under aerobic, anaerobic, and facultative anaerobic conditions. Biodiversitas 21: 4213-4220. Increased production of palm oil causes an increase in oil palm empty fruit bunches waste, while the utilization of the waste has not been carried out optimally. Oil palm empty fruit bunches contain high cellulose content which promotes the development of various types of bacteria with different characteristics. This study was aimed to determine the abundance and the characterization of bacteria that were isolated from extract suspension of oil palm empty fruit bunches in the form of a local microorganism solution under aerobic, anaerobic, and facultative anaerobic conditions. For isolation, the oil palm empty fruit extract suspension was inoculated on media Plate Count Agar Peptone and bacterial abundance was determined. Various bacterial characterization test included bacterial morphology test in the form of color and shape of macroscopic isolates, gram test using KOH 3%, fermentative oxidative test, soft rot test on potato tubers, hypersensitivity test on tobacco plant leaves, and hypo virulent test which was indicated by the presence of symptoms of disease in cucumber sprouts and indicated in the disease severity index (DSI) was carried out. The results of local microorganism solution isolation from oil palm empty fruit bunches obtained as many as 220 bacterial isolates consisting of 84 isolates in aerobic condition, 68 isolates in anaerobic condition, and 68 isolates in facultative anaerobic condition. The highest bacterial abundance in aerobic conditions was equal to 285.60 x 1010 CFU mL-1. Each bacterial isolate had different characteristics. Most of the characteristics of bacteria were turbid white (34.55%), round (69.55%), gram-positive (76.36%), fermentative (89.55%), softrot negative (71.82%), hypersensitive negative (97.27%), and virulent (74.55%).
Seed-borne pathogenic fungi on some soybean varieties Loekas Soesanto; Annisa Rahmaddila Rizky Hartono; Endang Mugiastuti; Heri Widarta
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210911

Abstract

Abstract. Soesanto L, Hartono ARR, Mugiastuti E, Widarta H. 2020. Seed-borne pathogenic fungi on some soybean varieties. Biodiversitas 21: 4010-4015. The present study was conducted to detect and identify seed-borne pathogenic fungi in some soybean varieties and their effect on seed germination. Experiment was performed in a completely random design with eight treatments and four replicates. Eight soybean varieties i.e., Malabar, Kaba, Dering, Detam I, Sinabung, Dena, Gepak Kuning, and Slamet were selected for the investigation. Seed borne fungi were isolated using blotter test and agar plate techniques. The variables observed were morphological/cultural characteristics, microscopic features of fungi, and percentage of seed germination. A total of eight fungi namely Aspergillus flavus Link, Aspergillus niger van Tieghem, Cladosporium oxysporum Berk. & M.A. Curtis, Colletotrichum dematium (Pers. et Fr.) Grove f.sp. truncate (Schw.) Arx, Curvularia pallescens Boedijn, Fusarium solani (Mart.) Sacc., Melanospora zamiae Corda, and Nigrospora sp. Mason were isolated from different varieties of soybean seeds. The highest seed germination was found to be 80.5% in Daring and Detam I varieties, respectively, and the lowest 53% was recorded in Dena variety.
Microbial study of organisms isolated from nutritional fruit juices surrounded by local fruit market in Nanded, Maharashtra, India Ashwini Deshmukh; Mujahed Siddiqui; Umar Khan Pathan; Umesh Dhuldhaj
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210940

Abstract

Abstract. Deshmukh AS, Siddiqui MM, Pathan UK, Dhuldhaj UP. 2020. Microbial study of organisms isolated from nutritional fruit juices surrounded by local fruit market in Nanded, Maharashtra, India. Biodiversitas 21: 4240-4246. Growing populations depend on the various food products for their nutritional values, but the hidden hunger for nutrients and vitamins are fulfilled by the fruits and their juices. Fruit juices are one of the most dependable food products, available in the Indian markets. But, standard and quality of juices always matters, hence most suggested one are freshly prepared juices as processed and packed one are mostly contains artificial flavors and food additives in the form of preservatives. Even these freshly prepared juices by local staler are also not free from contaminations. Hence, in this study we focus on the quality of fruit juices sold by the local seller. For this purpose, we collected 5 samples of fruit juices from the premises of Swami Ramanand Teerth Marathwada University, Nanded. The fruit juices are on orange, chiku, banana, apple and grapes. These samples were maintained in the basal media nutrient broth and uniculture of bacteria were isolated and maintained in the slant agar for further experiments. Total microbial load was calculated from collected and it was found that these juice samples contain significant bacterial load (2.5 x 106cfu/mL) that can cause diseases. In further investigations and identifications through the biochemical tests, we found that these juices contaminated with coliforms like E. coli and Klebsiella, along with this we also detected the presence of Listeria spp and Staphylococcus in juices samples.
Development of microsatellite markers for the house cricket, Acheta domesticus (Orthoptera: Gryllidae) Yash Munnalal Gupta; SUPATCHAREE TANASARNPAIBOON; KITTISAK BUDDHACHAT; SURIN PEYACHOKNAGUL; PHATTHARAPORN INTHIM; SOMJIT HOMCHAN
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210921

Abstract

Abstract. Gupta YM, Tanasarnpaiboon S, Buddhachat K, Peyachoknagul S, Inthim P, Homchan S. 2020. Development of microsatellite markers for the house cricket, Acheta domesticus (Orthoptera: Gryllidae). Biodiversitas 21: 4094-4099. The house cricket, Acheta domesticus, is one of the species of crickets commonly found in Thailand. Insect breeders in Thailand prefer to breed house cricket as food due to its better taste and popularity among local people. Moreover, largescale breeding industries also breed house cricket to produce cricket-based edible products. Insect breeding industry is growing rapidly and requires primary precaution for sustainable production. To facilitate breeding system to maintain genetic variation in the captive population, we have sequenced the whole genome of A. domesticus to search for simple sequence repeats (SSRs) in order to develop polymorphic microsatellite markers for preliminary population genetic analysis. A total of 112,157 SSRs with primer pairs were identified in our analysis.  Of these, 91 were randomly selected to check for amplification of microsatellite polymorphisms. From these, nine microsatellites were used to check genetic variation in forty-five individuals of A. domesticus from the Phitsanulok population (Thailand).  These microsatellite markers also showed cross-amplification with other three species of edible crickets, specifically Gryllus bimaculatus, Gryllus testaceus, and Brachytrupes portentosus. The microsatellite markers presented herein will facilitate future population genetic analysis of A. domesticus populations. Moreover, the transferability of these makers would also enable researchers to conduct genetic studies for other closely related species.
Species diversity and phenetic relationship among accessions of api-api (Avicennia spp.) in Java based on morphological characters and ISSR markers fennalia putri sabdanawaty; Purnomo PURNOMO; Budi Setyadi Daryono
Biodiversitas Journal of Biological Diversity Vol. 22 No. 1 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220125

Abstract

Abstract. Sabdanawaty FP, Purnomo, Daryono BS. 2021. Species diversity and phenetic relationship among accessions of api-api (Avicennia spp.) in Java based on morphological characters and ISSR markers. Biodiversitas 22: 193-198. Api-api (Avicennia spp.) from mangrove groups is rich in economic and ecological benefits. Research on the potential of api-api has been extensively done, but no research is specifically focused on the identification of api-api. This study aims to identify species diversity and phenetic relationships of api-api in Java based on morphological and molecular characters. The morphological analysis was based on 35 characters and referred to the descriptor. The PCA analysis on the morphological characters of Avicennia spp. showed a high diversity. Morphological characters have a high effect on grouping patterns such as habitat, leaf shape, leaf tip, leaf base, and petal color. Molecular observations were done on the polymorphism of DNA bands. The ISSR primers used were ISSR02, ISSR04, and ISSR10. PCR amplification of DNA was separated and visualized using a doc gel electrophoresis. The results showed a high diversity based on the percentage of DNA polymorphism. The research resulted in three species of Avicennia spp. in Java, namely Avicennia officinalis, A. alba, and A. marina. Phenetic relationships between Avicennia spp. form was based on similarity in character, not based on the area of origin. The environmental conditions in this study slightly opposed the character of Avicennia spp., which presumably due to the similarity in various marine areas of Java such as temperature, pH, and the required salinity.
Ethnomedicinal plants and practices related to pregnancy, childbirth, and postpartum healthcare of Minangkabau ethnic group, West Sumatra, Indonesia Marina Silalahi; ARDIAN KHAIRIAH; NISYAWATI NISYAWATI
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211018

Abstract

Abstract. Silalahi M, Khairiah A, Nisyawati. 2020. Ethnomedicinal plants and practices related to pregnancy, childbirth, and postpartum healthcare of Minangkabau ethnic group, West Sumatra, Indonesia. Biodiversitas 21: 4597-4605. In the Minangkabau ethnic cultures, medicinal plants have been used to treat health problems associated with pregnancy, childbirth, and postpartum period (PCP). The objectives of this study were to (i) document the medicinal plants used during pregnancy, childbirth, and postpartum recovery by Minangkabau ethnics and the associated ethnomedicinal practices, and (ii) identify plants that have the potential to be developed as ingredients to increase the production of breast milk. Data were collected in three villages, namely Guguak Sarai, Taruang Taruang, and Sungai Durian in West Sumatra, Indonesia, by interviewing a total of 141 informants, involving 9 key informants and 132 general respondents. A total of 42 species of medicinal plants were found to be used for PCP healthcare by Minangkabau people. These medicinal plants are used to facilitate childbirth, alleviate menstruation problems, assist recovery after miscarriage, mitigate postpartum hemorrhage, aid in postpartum recovery, and for infant care. A total of 26 species were represented by 9 families i.e. Poaceae (7 species), Arecaceae, Fabaceae, Zingiberaceae (3 species respectively), Euphorbiaceae, Lamiaceae, Meliaceae, Musaceae, and Asteraceae (2 species each). Majority of the used medicinal preparations are administered by drinking (35 species), bathing (4 species), and as a paste (3 species). Use of Musa balbisiana, Carallia brachiata, Lansium domesticum, and Toona sureni for treating problems related to pregnancy, childbirth, and postpartum period need to be further investigated for their phytochemistry and pharmacological properties. Plectranthus ambonicus and Sauropus androgynus are used to increase breast milk production, and further research is needed for standardizing processing and commercialization of these species.
The performances of M4 generation of Mentik Susu rice mutants irradiated with gamma-ray Wafa’ Nur Hanifah; Parjanto PARJANTO; Sri Hartati; ahmad yunus
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210915

Abstract

Abstract. Hanifah WN, Parjanto, Hartati S, Yunus A. 2020. The performances of m4 generation of Mentik Susu rice mutants irradiated with gamma-ray. Biodiversitas 21: 4041-4046. Mentik Susu is local rice from Magelang, Central Java, Indonesia. It has superiority, in terms of soft texture and white color, but on the other hand, this local rice has the disadvantage of having relatively high stems, low yield, and long life. One way to overcome the weakness of Mentik Susu rice is by mutating plants using gamma-rays. The purpose of this research was to study M4 mutants from Mentik Susu rice irradiated with gamma-ray and to select mutans that have short stem and high productivity. The study was conducted using a simple random design experiment by planting various strains of M4 generation of Mentik Susu rice irradiated with 100 Gy and 200 Gy gamma-rays. T-test was employed to test the difference between strains treated with gamma-ray irradiation and control samples (without gamma-ray irradiation). The results showed that the M4 Mentik Susu rice irradiated with 100 Gy and 200 Gy gamma-rays in overall had lower stems, shorter flowering and harvesting ages, and higher productivity than non-irradiated Mentik Susu rice (control). The strains with the shortest stem and with highest yield productivity was resulted from 200 Gy gamma-ray irradiation with code of M-MS200-G15T3-2. This study also selected 30 individual mutant plants that had short stems and high productivity, suggesting that these plants can be passed to M5 generation.
Changes in microbial populations during co-composting of dewatered sewage sludge with pruning wastes in windrow piles amirhossein nafez; mahnaz nikaeen; akbar hassanzadeh; safoora kadkhodaei
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211026

Abstract

Abstract. Nafez AH, Nikaeen M, Hassanzadeh A, Kadkhodaei S. 2020. Changes in microbial populations during co-composting of dewatered sewage sludge with pruning wastes in windrow piles. Biodiversitas 21: 4648-4655. The aim of this paper was to study the composting of sewage sludge (SS) and pruning waste as bulking agent with regard to abiotic factors and succession of functional microbial groups. To prepare the composting piles bulking agent and SS in volumetric ratios of 1:1 (TW1), 2:1(TW2), and 3:1(TW3) were used, and a pile of raw sludge was used as control. Samples for investigation were obtained from the composting piles at time intervals of 5-7 d. The temperature of the control pile and TW1 was just 37°C and did not reach the thermophilic phase. The number of thermophilic bacteria increased to 14 log CFU gDW-1 in the thermophilic phase. The salmonella was lost on the 47th and 19th days of the composting process, for TW2 and TW3, respectively. There was a significant correlation between mesophilic fungi with mesophilic bacteria (r=0.942, P<0.001). The majority of the microbial populations inspected revealed their maximum numbers towards the end of the thermophilic phase, with decreasing tendencies afterward. The number of evaluated microorganisms was controlled by differences in physicochemical parameters at different composting phases. The results revealed that the scheduling of the thermophilic period, as well as the microbial community and environmental situations, affects the microbial structure andTW2 had the best quality compared to other piles in achieving the best thermophilic phase and elimination of pathogenic microorganisms.
Antibacterial, cytotoxicity and metabolite profiling of crude methanolic extract from andaliman (Zanthoxylum acanthopodium) fruit Mada Triandala Sibero; ANGGUN PUSPITARINI SISWANTO; RETNO MURWANI; EVAN HANSEL FREDERICK; ALDI PRATAMA WIJAYA; EMMY SYAFITRI; KINDI FARABI; SHUN SAITO; YASUHIRO IGARASHI
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210928

Abstract

Abstract. Sibero MT, Siswanto AP, Frederick EH, Wijaya AP, Syafitri E, Farabi K, Murwani R, Saito S, Igaras Y. 2020. Antibacterial, cytotoxicity and metabolite profiling of crude methanolic extract from andaliman (Zanthoxylum acanthopodium) fruit. Biodiversitas 21: 4147-4154. The local community in North Sumatra has utilized andaliman fruit (Zanthoxylum acanthopodium) as spices for traditional cuisines because it has a unique flavor. Information on the antimicrobial activity of Z. acanthopodium fruit against aquaculture pathogens and its bioactivity against leukemia cell lines are limited. The purposes of this study were to evaluate the antimicrobial activity of Z. acanthopodium fruit against Tenacibaculum maritimum, Vibrio alginolyticus, V. anguillarum, V. harveyi that are known as pathogens in aquaculture; to determine cytotoxic property against murine P388 leukemia cells; and to characterize its metabolites profile. The sample was extracted using methanol by the maceration method. Antibacterial assay was conducted by Kirby-Bauer disc diffusion method; while cytotoxicity assay using the XTT method. Proximate analysis showed that Z. acanthopodium fruit contained 63.41% of moisture, 24.73% of crude fiber, 9.81% of crude protein, 6.90% of ash, and 2.55% of crude fat. Several phytochemical components were detected, such as alkaloid, flavonoid, tannin, triterpenoid, and steroid. The GC/MS analysis indicated the presence of various compounds from terpenoid and terpenes derivatives. This study indicated that Z. acanthopodium fruit was not potential as antibacterial agents against the aquaculture pathogens; however, the methanol extract showed cytotoxic potential with IC50 19.14 µg/mL against murine P388 leukemia cells.

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