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Biodiversitas Journal of Biological Diversity
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Articles 6,269 Documents
Genetic comparison among some cultivars of Catharanthus roseus (L.) G. Don. using three intergenic spacers of the chloroplast genome AGUS HERY SUSANTO; MURNI DWIATI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250721

Abstract

Abstract. Susanto AH, Dwiati M. 2024. Genetic comparison among some cultivars of Catharanthus roseus (L.) G. Don. using three intergenic spacers of the chloroplast genome. Biodiversitas 25: 2999-3007. Catharanthus roseus (L.) G. Don belongs to the Apocynaceae family and is recognized as both an ornamental plant and a medicinal herb. By means of both hybridization and mutation breeding, numerous cultivars of C. roseus have been developed over time. This encourages the necessity for molecular characterization to establish a DNA barcode for each cultivar, particularly in relation to its potential as a medicinal herb. Therefore, this study aimed to genetically compare some cultivars of C. roseus based on three Intergenic Spacers (IGS) of the chloroplast genome, namely trnQ-rps16, rps16-trnK, and trnL-rpl32. Ten samples of C. roseus were randomly collected from around Purwokerto City, Central Java, Indonesia, representing cultivars with various corolla and flower eye colors. Universal primers were used to amplify the three molecular markers. The results showed that some insertion-deletions (indels) with rps16-trnK and trnL-rpl32 were observed, indicating some potential barcodes for C. roseus cultivars, following pharmacological analysis. On the other hand, very little genetic difference among samples was found with trnQ-rps16. It can be concluded that some other molecular markers, specifically those more closely related to the expression of flower color in C. roseus, should be explored to obtain candidate DNA barcodes in assisting the authentication of medicinal herbs.
The protection effort of leopard cats (Prionailurus bengalensis Kerr, 1792) in the Upper Cisokan Pumped Storage, West Java, Indonesia TEGUH HUSODO; ERRI NOVIAR MEGANTARA; ASEP ZAINAL MUTAQIN; DWI RUSTAM KENDARTO; INDRI WULANDARI; SYA SYA SHANIDA
Biodiversitas Journal of Biological Diversity Vol. 25 No. 1 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250119

Abstract

Abstract. Husodo T, Megantara EN, Mutaqin AZ, Kendarto DR, Wulandari I, Shanida SS. 2024. The protection effort of leopard cats (Prionailurus bengalensis Kerr, 1792) in the Upper Cisokan Pumped Storage, West Java, Indonesia. Biodiversitas 25: 169-176. Humans develop various infrastructures to meet electricity needs so that it is to improve human welfare besides the increasing population. Hydropower development cannot be separated from land clearing, which damages and eliminates the habitats of wild animals, including leopard cats (Prionailurus bengalensis Kerr, 1792). Humans also cleared land as agricultural land to fulfill their needs. Fulfilling the needs of electricity and agriculture is necessary to improve human welfare. Besides, leopard cats need a suitable habitat to meet their needs. Therefore, protection effort is required to fulfill leopard cats' and humans' needs. The study aims to reveal the protection efforts in the Upper Cisokan Pumped Storage, West Java, Indonesia. A qualitative approach was applied through literature reviews. The protection effort of leopard cats was conducted through stakeholder participation in the UCPS area. As the initiator, Indonesia Hydropower Company (PT. PLN) involves various stakeholders related to the construction of the UCPS hydropower plant, including Perum Perhutani, contractors, and the local people. Indonesia Hydropower Company (PT. PLN) protects leopard cats by managing the impacts produced by the UCPS hydropower plant and biodiversity.
Fruit bats trade in the traditional markets of South Minahasa, North Sulawesi, Indonesia TILTJE ANDRETHA RANSALELEH; MARTHA KAWATU; INDYAH WAHYUNI; JANE ONIBALA; MEIS JACINTA NANGOY; SINTYA UMBOH; UNSTAIN N. W. J. REMBET; SURYO SAPUTRO; SIGIT WIANTORO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 2 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250231

Abstract

Abstract. Ransaleleh TA, Kawatu M, Wahyuni I, Onibala J, Nangoy MJ, Umboh S, Rembet UNWJ, Saputro S, Wiantoro S. 2024. Fruit bats trade in the traditional markets of South Minahasa, Sulawesi, Indonesia. Biodiversitas 25: 716-725. The hunting and trading of fruit bats are significant sources of income for several communities in North Sulawesi, Indonesia. Therefore, this research aimed to map the market locations and identify the species of traded bats, along with their conservation status in South Minahasa District. Surveys of markets, hunters, and sellers were conducted for 5 months from May to September 2023. Morphological examinations were carried out on the traded bats, focusing on several parameters such as body weight, morphometric and description of the morphological characters. We identified the traditional markets which sell fruit bats (family Pteropodidae), Acerodon celebensis and Pteropus alecto meat, namely Berdikari Tumpaan, 54 Amurang, 45 Langsot Tareran, Tenga, Pakuure, Ongkaw, Soko Raanan Baru, Motoling, Poigar, Poopo, Pinaesaan Tompaso Baru, and Pinasungkulan Modoinding. Furthermore, two markets, namely Pakuure and Pinaesaan Tompaso Baru, were identified selling the small fruit bats (family Pteropodidae), Cynopterus minutus, Dobsonia exoleta, Nyctimene cephalotes, Rousettus amplexicaudatus, and Thoopterus nigrescens. According to the International Union for Conservation of Nature (IUCN) Red List, A. celebensis and D. exoleta are endemic bat species in Sulawesi with a conservation status of vulnerable and least concern, respectively. Fostering education and advocacy program is crucial to promote awareness and conservation strategy, especially for the 12 traditional markets which trade seven fruit bat species in South Minahasa, Sulawesi.
Diversity of fungi and dynamics of ethanol concentration during fermentation of porang (Amorphophallus oncophyllus) HENNY HELMI; RIWAN KUSMIADI; ROBBY GUS MAHARDIKA; ENI KARSININGSIH
Biodiversitas Journal of Biological Diversity Vol. 25 No. 2 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250213

Abstract

Abstract. Helmi H, Kusmiadi R, Mahardika RG, Karsiningsih E. 2024. Diversity of fungi and dynamics of ethanol concentration during fermentation of porang (Amorphophallus oncophyllus). Biodiversitas 25: 542-552. Fermentation can be an alternative to process porang (Amorphophallus oncophyllus). As one of the fermentation products, ethanol can degrade starch and consequently increase the purity of glucomannan in porang flour. However, ethanol can also inhibit the growth of microorganisms that play a role in fermentation. This study aimed to determine the ethanol concentration and investigate the fungal diversity during the fermentation of porang tubers. Ethanol analysis was analyzed by Headspace Gas Chromatography coupled with flame ionization detection, and Starch content was analyzed by colorimetric method. Fungal metagenome was amplified at the Internal transcribed spacer (ITS) region of nuclear DNA (rDNA) and followed by sequencing using Oxford Nanopore Technology (ONT). The result showed that the ethanol concentration increased during 48 hours of fermentation, followed by decreased starch content. The highest fungal diversity index occurred at 48 hours of fermentation. Ethanol and fungal enzymatic activity can degrade the starch. During fermentation, the Candida parapsilosis population increased until 24 hours after fermentation. Cyberlindnera subsufficiens population increased at 48 hours fermentation until 72 hours fermentation. Fungal diversity and ethanol concentration had decreased at 72 hours of fermentation, so porang fermentation should be stopped at 48 hours. Candida parapsilosis could be the candidate of starter for fermentation porang due to the capability of this species to produce ethanol to degrade starch.
The impact of different management on pine-based agroforestry system and litter accumulation on the population and activity of cellulolytic bacteria NOVI ARFARITA; YULIA NURAINI; MAYDELLA VISTA PUTRI RINADY; EKO NOERHAYATI; CAHYO PRAYOGO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 3 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250303

Abstract

Abstract. Arfarita N, Nuraini Y, Rinady MVP, Noerhayati E, Prayogo C. 2024. The impact of different management on pine-based agroforestry system and litter accumulation on the population and activity of cellulolytic bacteria. Biodiversitas 25: 924-936. Agroforestry leads to the accumulation of organic matter, and the environmental conditions, litter quality, and decomposing organisms influence the rate at which litter decomposes. Litter decomposition in agroforestry systems is slow due to the high lignin and phenolic substances content, low light intensity, and high humidity under the canopy's shading condition. Therefore, a study was carried out to address this issue to isolate cellulolytic bacteria capable of breaking down plant litter using a qualitative cellulase activity testing method. The complete randomized block design and Tukey's test were used to determine the treatment's significance. Six agroforestry systems were examined: pine-coffee, pine-banana, pine-cardamom, pine-cardamom, mixed garden, and citrus. The PK (Pine-Coffee) plot had the highest canopy cover, litter density, and cellulolytic bacteria. The study identified three cellulolytic bacteria isolates (PK1, PK13, and PK10) from the 50 isolated bacteria of PK plot, producing the largest clear zones on CMC media. These identified isolates belonging to the Bacillus genus were Gram-positive bacteria with rod-shaped cells. The different types of litter in agroforestry systems affect the content of lignin, polyphenols, cellulose, and C/N ratios, which can influence the abundance of cellulolytic bacteria and their potential cellulase activity.
Revealing species identity of edible razor clam Cultellus sp. (Bivalvia: Pharidae) from Madura Island, Indonesia RENI AMBARWATI; DWI ANGGOROWATI RAHAYU
Biodiversitas Journal of Biological Diversity Vol. 25 No. 4 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250418

Abstract

Abstract. Ambarwati R, Rahayu DA. 2024. Revealing species identity of edible razor clam Cultellus sp. (Bivalvia: Pharidae) from Madura Island, Indonesia. Biodiversitas 25: 1505-1513. Razor clams have an essential role as commercial commodities. One of the poorly-known edible razor clams from Madura, Indonesia, has not been identified as the species. This research aimed to identify the edible razor clam (Bivalvia: Pharidae) species from Madura Island, Indonesia. The samples of razor clams (Cultellus sp.) were collected from Bangkalan, Madura Island, Indonesia. Identification was conducted based on morphological and molecular characterization. The foot tissues of three individuals were processed for DNA isolation, electrophoresis, amplification, and sequencing to obtain the sequences of COI gene. The morphological characters of razor clam shells were analyzed descriptively and quantitatively. Data were collected from the COI gene sequences of razor clam Cultellus sp. and descriptively analyzed using bioinformatics software. The morphological identification revealed razor clams (Cultellus sp) from Bangkalan, Madura, Indonesia, Cultellus subellipticus. The nucleotide base composition sequences of C. subellipticus A, B & C consisted of Thiamine (T), Cytosine (C), Adenine (A), and Guanine (G) with a mean of 18.25, 12.92, 23.42, and 46.39%. Maximum Likelihood (ML) and Minimum Evolution (ME) phylogenetic analysis was also conducted using the Kimura 2 Parameter model to establish one major clade on C. subellipticus from the gene bank and a different group with Cultellus attenuatus and one out-group significantly different from the Ensis macha. This finding was strengthened by molecular identification results, which indicated the similarity with C. subellipticus from GenBank, with very high BOLD System data between 98.10-98.86%.
Ability of commercial Beauveria bassiana to suppress the brown planthopper attack by inducing resistance into different rice variety ANTONI LISWANDI; MY SYAHRAWATI; HASMIANDY HAMID; ARNETI ARNETI; JAMES RINALDI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 12 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d241232

Abstract

Abstract. Liswandi A, Syahrawati M, Hamid H, Arneti, Rinaldi J. 2023. Ability of commercial Beauveria bassiana to suppress the brown planthopper attack by inducing resistance into different rice variety. Biodiversitas 24: 6704-6710. Beauveria bassiana (Bb) is one of the biological agents for controlling the Brown Planthopper (BPH), Nilaparvata lugens, which is generally applied directly to BPH. Nowadays, it is also used to induce resistance in rice plants; this ability has never been tested on commercial B. bassiana. The research aimed to study the effect of different rice varieties and induced resistance of commercial Bb on BPH and rice plants. The study used a Factorial Completely Randomized Design (FCRD). The first factor was the difference in rice varieties (IR 42, Cisokan, Batang Piaman), and the second factor was the soaking of the seeds and roots by commercial Bb (with commercial Bb, without commercial Bb). The results showed no interaction between rice variety and commercial Bb against BPH and rice plants. Commercial Bb reduced the attack intensity of BPH (13.31%); meanwhile, different rice varieties influenced BPH mortality, colonization, and plant growth. The Cisokan variety was better at suppressing the BPH population (45%) and suitable for colonization by commercial Bb. The IR 42 variety was more responsive than other varieties in accepting the presence of commercial Bb (16%). 
New specific primer matK and rbcL region for DNA barcode pitcher plant Nepenthes spathulata MUHAMMAD NANDA UTAMA; NITA ETIKAWATI; SUGIYARTO SUGIYARTO; ARI SUSILOWATI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 6 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250621

Abstract

Abstract. Utama MN, Etikawati N, Sugiyarto, Susilowati A. 2024. New specific primer matK and rbcL region for DNA barcode pitcher plant Nepenthes spathulata. Biodiversitas 25: 2515-2523. The matK and rbcL genes were proposed as the preferred plant barcoding loci by The Consortium for the Barcode of Life (CBOL). DNA barcoding efficiently identifies samples at the species level using short standard DNA sequences. The identification disclosure needs is an important basis given the confusion in systematics in Nepenthes spathulata. Therefore, this study aims to design matK and rbcL region-specific primers for DNA barcoding pitcher plants. The primary design uses Primer3Plus with a blueprint from the GenBank KDQ007081.1 for matK and MH346374.1 for rbcL. Following testing primary candidates with Oligo Analyzer and Primer-BLAST, the primers MkNs1, and RbNs4 were selected as the optimal criteria based on the values of ?G and primer specificity. Optimization of annealing temperature with PCR gradient shows that the temperature range 52-57°C produces a good band for both regions and corresponds to the matK and rbcL region with product sizes of 800-900 bp from seven samples, which could be observed from the gel electrophoresis. Sequence similarity using blast-N, the matK sequence has similarity to the N. spathulata matK gene of 99.64% and 99.63% for the rbcL gene of N. ventricosa x N. alata. This MkNs1 and RbNs4 primer can be used to discover the identity of N. spathulata and the Nepenthes genus.
Genetic diversity and connectivity of Red Snapper Lutjanus gibbus in the Papua Waters, Indonesia BAYU PRANATA; RIDWAN SALA; ARADEA BUJANA KUSUMA; ABDUL HAMID A. TOHA; DEBORA CHRISTIN PURBANI; DANIEL FRIKLI MOKODONGAN; SIPRIYADI SIPRIYADI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 1 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250132

Abstract

Abstract. Pranata B, Sala R, Kusuma AB, Toha AHA, Purbani DC, Mokodongan DF, Sipriyadi. 2024. Genetic diversity and connectivity of Red Snapper Lutjanus gibbus in the Papua Waters, Indonesia. Biodiversitas 25: 276-286. There is limited knowledge regarding the genetic connectivity and diversity of the Red Snapper (Lutjanus gibbus Forsskål, 1775) populations that inhabit Papua Waters, Indonesia. Thus, the current study attempted to ascertain the genetic characteristics, level of diversity and genetic connectivity of the L. gibbus population. We conducted genetic research on 38 L. gibbus specimens from five different places in Papua Waters. We analyzed the L. gibbus genetic characteristics, diversity and genetic connectivity using the Cytochrome C Oxidase subunit I (COI) gene as the genetic marker. There were 15 polymorphism sites in the COI gene sequence among L. gibbus individuals. Polymorphism occurs due to transversion and transition mutations. The COI gene fragment was translated, producing 188 amino acids composed of 19 different amino acids. A total of 13 distinct haplotypes were detected among the L. gibbus population residing in Papua Waters. The haplotype diversity (Hd=0.740) and nucleotide diversity (Pi=0.002) were relatively medium. The genetic structure study indicated that the 5 populations of L. gibbus in the Papua Waters had little genetic differentiation, as evidenced by a Fixation Index (Fst) of 0.018 (P-value 0.35386±0.01443). Based on this, the management of Red Snapper resources at these 5 locations must be carried out as a single unit.
The phenetic relationship of citrus plants based on the morphological and anatomical characteristics MOHAMAD NURZAMAN; TIA SETIAWATI; RUSDI HASAN; NAZLA KARUNIA QOTRUNNADA; JOKO KUSMORO; NANDANG PERMADI; EUIS JULAEHA
Biodiversitas Journal of Biological Diversity Vol. 25 No. 3 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250336

Abstract

Abstract. Nurzaman M, Setiawati T, Hasan R, Qotrunnada NK, Kusmoro J, Permadi N, Julaeha E. 2024. The phenetic relationship of citrus plants based on the morphological and anatomical characteristics. Biodiversitas 25: 1201-1213. Indonesia stands as a global biodiversity hub, boasting an exceptional richness that earns it the distinction of being a mega-biodiversity country. Among its diverse ecosystems, the Rutaceae family holds significance, encompassing numerous genera, notably the Citrus genus, which showcases a splendid array of citrus plants. This research aimed to determine phenetic relationships based on the morphological and anatomical characters of seven citrus plants (Citrus reticulata var. Chokun, C. reticulata var. Fremont, C. reticulata var. Santang, C. reticulata var. Dekopon, C. aurantium var. variegata, C. aurantium, and C. limon) in Parongpong District, West Bandung Regency, West Java. The method used in this research was explorative with purposive sampling. This study collected three samples for respective citrus plants for character observations of leaf morphology, anatomy, and fruit morphology. Morphology and anatomy observations were conducted in the Department of Biology, Padjadjaran University laboratory. The description of morphological and anatomical data obtained from each orange plant was then analyzed using NTSYS PC version 2.11a software to obtain similarity values using the dendrogram analysis method. Phenetic analysis of seven orange plants produced a dendrogram divided into 2 main branches, branch I and branch II, with a similarity coefficient of 0.3846. Branch I consists of Chokun orange (Citrus reticulata var. Chokun), Fremont orange (C. reticulata cv. Fremont), Santang orange (C. reticulata cv. Santang), and variegated orange (C. sinensis cv. variegata) and branch II consists of dekopon orange (C. reticulata var. Dekopon), Sunkist orange (C. aurantium), and lemon (C. limon).

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