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All Journal Jurnal Biologi Udayana Bioma : Berkala Ilmiah Biologi Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Biogenesis: Jurnal Ilmiah Biologi Journal of Tropical Biodiversity and Biotechnology ZOO INDONESIA Majalah Ilmiah Biologi BIOSFERA: A Scientific Journal Scripta Biologica Nusantara Science and Technology Proceedings Zoo Indonesia BiosciED: Journal of Biological Science and Education Berkala Penelitian Hayati JURNAL BIOLOGI PAPUA Berkala Ilmiah Biologi
Rury Eprilurahman
Fakultas Biologi, Universitas Gadjah Mada
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Economics, Econometrics & Finance Education Engineering Environmental Science Immunology & microbiology Law, Crime, Criminology & Criminal Justice Materials Science & Nanotechnology Medicine & Pharmacology Veterinary Other

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Karakter Morfologis dan Molekular Macrobrachium spp. dari Sungai Opak Daerah Istimewa Yogyakarta Trijoko T; Niken Satuti Nur Handayani; Anita Widianawati; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 3 No 1 (2015)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v3i1.559

Abstract

Several rivers flow across Daerah Istimewa Yogyakarta (DIY includes Opak River which it’s upstream located on Merapi Volcano area. The river has a lot of biological resources, includes prawns. Freshwater prawns (Macrobrachium spp.) has important role in maintaining the balance of freshwater ecosystems. The purpose of this research was to determine species diversity of Macrobrachium spp. and to understand the morphological and molecular characters of them. Phenetic similarity was analyzed using 74 morphological characters, ISSR1 and ISSR3 primers. The results were analyzed using a program MVSP 3.1 (Multi- Variate Statistical Package) to obtain a dendogram that showed both intra-and interspecies similarity of Macrobrachium spp. Six species of Genus Macrobrachium were identified, they are Macrobrachium pilimanus, M. sintangense, M. lanchesteri, M. cowlesi, M. latidactylus, and M. equidens. Both morphological and molecular analyses show two major clusters with the similarity of 55.6% for morphology and 21.52% for molecular. Based on morphological and molecular characters analysis, we concluded that phenetic similarity of Macrobrachium spp. in Opak River was affected by the morphological structure of the second pereiopod, habitat type, size and number of eggs, as well as the type of larval development.Keywords: characters, Macrobrachium, molecular, morphology, Opak River
Keanekaragaman Jenis Kepiting (Decapoda: Brachyura) di Sungai Opak, Daerah Istimewa Yogyakarta Rury Eprilurahman; Wahyu Tejo Baskoro; Trijoko T
Biogenesis: Jurnal Ilmiah Biologi Vol 3 No 2 (2015)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v3i2.934

Abstract

Crabs has been known inhabiting diverse habitat. Crabs were found in the sea, and some other species were found in terrestrial or freshwater. Crabs is one of the important biotic components of the aquatic ecosystem as detrivore. Opak River is one of the major rivers in the Daerah Istimewa Yogyakarta (DIY), which has a various conditions and direct impact on biodiversity including the diversity of crabs. Up to now, there is no database of crab species from Yogyakarta. The aim of this research was to determine the diversity of crabs from Opak River. Research were carried out for 5 months between June and October 2013. Samples were characterized and identified morphologically. The results show that there are five species of crabs in Opak River. Parathelphusa convexa (De Man, 1879) was commonly found from upstream to downstream. Varuna litterata (Fabricius, 1798) was found in downstream to estuary (brackish water). The other three species were only found in the estuary area viz. Ocypode ceratophthalma (Pallas, 1772), Episesarma versicolor (Tweedie, 1940), and Scylla serrata (Forsskål, 1775). It can be concluded that diversity of crabs in the Opak River estuary area is higher than the upstream and downstream areas.Keywords: brachyuran, crabs, diversity, morphology, Opak River
Karakterisasi Udang Air Tawar Anggota Genus Macrobrachium Bate, 1868 (Decapoda: Palaemonidae) dari Air Terjun Tegenungan, Gianyar, Bali Berbasis Data Morfologi dan Molekular Wildan Ahmad Nabil; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 6 No 2 (2018)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v6i2.5135

Abstract

Macrobrachium is one of prawn genera which has largest species number in family Palaemonidae, with some species of this genus being important commodity in aquaculture. Morphological characters for identification of this genus depend on environmental condition, growth phase, sex, and social dominance. This makes morphological identification on this genus quite difficult and tricky. Alternative approaches are required for better methods of Macrobrachium identification. DNA barcoding using 16S mitochondrial rRNA appears to be one promising method for Macrobrachium identification. This research aims to identify Macrobrachium from Tegenungan Waterfall using morphological and molecular analysis. Samples were taken from 4 sampling sites beneath the waterfall. All specimens were identified using several morphological identification methods. Specimen CR 07a and CR 10 were identified using molecular method. The molecular analysis utilized 16Sar (5’-CGCCTGTTTATCAAAAACAT-3’) as forward primer and 16Sbr (5’-CCGGTCTGAACTCAGAT-CACGT-3’) as reverse primer. From 11 specimens, 10 were identified as Macrobrachium. Specimen CR 07a was identified morphologically as M. horstii. According to BLAST analysis, specimen CR 10 was recognized as M. horstii with similarity up to 99% to GenBank specimens (JF310718.1 dan FM986616.1). Specimen CR 07a only reach 97% similarity to both GenBank specimens. Genetic distance analysis between specimen CR 07a and CR 10 assumed high genetic diversity, or even cryptic species indication in M. horstii population of Tegenungan Waterfall.  
Geometric Morphometrics Analysis of Chelae and Carapace of the Freshwater Prawn Macrobrachium Bate, 1868 Rich Gemilang Simanjuntak; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 1 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i1.7803

Abstract

The shape of chelae and carapace can be used to distinguish between species of prawn. This study aims to determine the variations in the shape of chelae and carapace in several species belonging to the genus Macrobrachium using analysis of geometric morphometric. This study uses photos of specimens that have been processed with several TPS software. Data analyzed statistically by PCA using the MorphoJ software. Clustering analysis using UPGMA method using PAST software. The results showed the carapace shape grid deformation varied at the tip of the rostrum, the tip of the ocular spine and the lower curvature of the front of the carapace, and the base spines of rostrum. Grid deformation in the shape of chelae varies at the tip of the pollex, the junction between the pollex and the manus on the inferior margin of the propodus, the upper and lower points marking the junction of the dactylus with the propodus. PCA shows the total variation of the carapace shape is 82.66% which is divided into PC1: 75.11% and PC2: 7.55%. While the total variation of the shape of chelae is 87.56% which is divided into PC1: 55.49% and PC2: 32.07%. Clustering analysis shows the grouping of populations of Macrobrachium, the first group is M. latidactylus and M. sintangense, the second group includes M. horstii and M. latimanus. M. lar is a species that shows the similarity of the shape of the carapace and chelae with the two groups. M. rosenbergii and M. pilimanus are on different lines.
Monitoring Anurans Diversity along Code River, Province of Daerah Istimewa Yogyakarta, Indonesia Donan Satria Yudha; Wulan Rahmani Akmal; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.10174

Abstract

The research about frogs and toads diversity in the Code River, Province of Daerah Istimewa Yogyakarta (DIY) had been done in 2012 (Yudha et al., 2013). Now, after five years passed, we conduct monitoring activities for updating its diversity and distribution. After five years, we consider that there are many changes along the river that influenced habitat condition for frogs and toads which live along and near the river. Some of the changes are unused land became human settlement or paddy fields and wasteland. The purpose of this research is to monitor the diversity of frogs and toads after five years along Code River. The method used was acoustic and visual encounter survey (VES). We have done total of 10 days of sampling. Each day we did two times sampling, during the day and night. Results show that the species number of frogs and toads found in 2012 were slightly higher compare to 2017. The frogs and toads on upstream part were diverse in 2017 compare to 2012 due to natural restoration of riparian vegetation occur on upstream. The frogs and toads on midstream part were less diverse in 2017 compared to 2012 due to increasing human activities near the river and less riparian vegetation. The frogs and toads on downstream part were also less diverse in 2017 compared to 2012 due to increasing human activities near the river and more household waste stuck on riparian vegetation. There was variation of anurans diversity after five years due to changing on physical condition of the river and human activities near the river.
Morphological and molecular characters of Cherax quadricarinatus (von Martens, 1868) from Sermo Reservoir and Tambakboyo Retention Basin, Daerah Istimewa Yogyakarta, Indonesia Rury Eprilurahman; Aplina Krismutia Simarmata; Lukman Hakim; Trijoko Trijoko
Biogenesis: Jurnal Ilmiah Biologi Vol 9 No 1 (2021)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v9i1.16612

Abstract

The Australian red claw freshwater crayfish, Cherax quadricarinatus is one of the most widely distributed and cultivated freshwater crayfish due to its high tolerance towards various environmental conditions. Native to North Australia and South Papua New Guinea, this crayfish was found in Tambakboyo Retention Basin in 2016 and Sermo Reservoir in 2019. This research was aimed to identify the morphological and molecular characters of  C. quadricarinatus collected from Sermo Reservoir and Tambakboyo Retention Basin, Yogyakarta. The genetic information of the samples was compared to Australian red claw freshwater crayfish currently available. The methodology used for this research are morphological, morphometrical, meristic identification, and molecular identification using the PCR method. The primer used to be 1471 primers as the forward primer and 1472 primers as the reverse primer. In conclusion, all six specimens obtained were identified to be C. quadricarinatus. Morphological analysis using UPGMA showed that all specimens were formed one big cluster and has the highest similarity index (1.00). Molecular analysis using BLAST showed that specimen from Sermo Reservoir was 98.96% identical to C. quadricarinatus and specimen from Tambakboyo Retention Basin was 100% identical to C. quadricarinatus. Thus concluding that based on their morphological and molecular character, all samples of this study were C.  quadricarinatus. This finding also contributes to the distribution information of C. quadricarinatus in Daerah Istimewa Yogyakarta
Karakter morfologis dan molekuler udang regang (Macrobrachium sintangense De Man, 1898) dari Daerah Istimewa Yogyakarta Rini Rahmawati; Rury Eprilurahman; Lukman Hakim; Tuty Arisuryanti; Zuliyati Rohmah; Trijoko Trijoko
Jurnal Biologi Udayana Vol 25 No 1 (2021): JURNAL BIOLOGI UDAYANA
Publisher : Program Studi Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Udayana

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24843/JBIOUNUD.2021.v25.i01.p02

Abstract

Macrobrachium genus has many species members and distributed in various countries including Indonesia. One of the species belonging to the Macrobarachium genus that can be found in Indonesia was Macrobrachium sintangense or known as Sunda River Prawn. Identification of this species is important as an effort to expand studies on Sunda River Prawn in the Region of Yogyakarta. Identification of this species was carried out morphologically and molecularly with the 16S gene. The purpose of this study was to determine the morphological and molecular characters of M. sintangense. Morphological identification is done by identifying morphological, morphometric, and meristic characters according to the identification key. Molecular analysis was carried out by isolation, amplification, electrophoresis, and DNA visualization with UV illuminators, DNA sequencing by 1st Base. The results of this study indicate the morphological character of the rostrum slightly curved upwards or like a knife, rounded post antennular carapace, absent preanal carina, pubescene in the proximal half to two thirds of the chela. Morphologically, all samples were identified as members of the genus Macrobrachium. There are eight (8) specimens identifiable to the species level, as M. sintangense. The results of molecular identification of two (2) specimens showed a high similarity value and a close relationship with M. sintangense from GenBank samples and also close relationship with M. sintangense from Tukad Panti, Bali, Indonesia. The conclusion of this research is that morphologically and molecularly, the samples found in the Winongo.
Karakter morfologis dan molekular udang air tawar anggota Macrobrachium pilimanus species group di Sungai Opak, Winongo dan Sempor, Daerah Istimewa Yogyakarta Malya Adzillina Silmi; Rury Eprilurahman; Trijoko Trijoko; Lukman Hakim
Jurnal Biologi Udayana Vol 25 No 1 (2021): JURNAL BIOLOGI UDAYANA
Publisher : Program Studi Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Udayana

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24843/JBIOUNUD.2021.v25.i01.p07

Abstract

Macrobrachium is a genus of the Crustacea subphylum with the highest diversity. Identification of the morphology of the genus Macrobrachium is mostly challenging due to the characters for species level identification are complicated, whereas many characters are common to all Macrobrachium species. In addition, it is difficult to identify morphology because of the influence of social dominance in males. Therefore, another approach is needed to identify Macrobrachium accurately, one of which is by barcoding DNA using the 16S mitochondrial gene. This study was aimed to determine the morphological and molecular characters of Macrobrachium pilimanus species group based on the 16S mitochondrial gene from the Opak, Winongo, and Sempor rivers, in Daerah Istimewa Yogyakarta. Furthermore, shrimp samples were identified based on morphological, meristic, and morphometric characters. Meanwhile, molecular analysis uses 16Sar as forward primer and 16Sbr as reverse primer. Based on the morphological identification results, the shrimp samples obtained could only be identified up to the level of the Macrobrachium genus. In addition, the shrimp samples can also be included in the Macrobrachium pilimanus species group based on the general characteristics of the species group. The shrimp samples in this study have highest similarities in character with the species M. pilimanus and M. empulipke distributed in Java. Based on molecular analysis, sample from Winongo River (WNM1) has a similarity of 87.63% with Macrobrachium forcipatum (JQ362454.1) and 87,02% with M. dienbienphuense (JQ390474.1), which means that it is a different species from the species in the GenBank. Macrobrachium forcipatum and M. dienbienphuense are members of M. pilimanus species group. The conclusion of this research is that all the samples are member of M. pilimanus species group.
Keanekaragaman katak dan kodok (Amphibia: Anura) di Suaka Margasatwa Paliyan, Gunungkidul, Yogyakarta Donan Satria Yudha; Rury Eprilurahman; Hastin Ambar Asti; Herofi Azhar; Nurrochmah Wisudhaningrum; Puji Lestari; Siti Markhamah; Imam Sujadi
Jurnal Biologi Udayana Vol 23 No 2 (2019): JURNAL BIOLOGI UDAYANA
Publisher : Program Studi Biologi, Fakultas Matematika dan Ilmu Pengetahuan Alam, Universitas Udayana

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (586.883 KB) | DOI: 10.24843/JBIOUNUD.2019.v23.i02.p03

Abstract

Frogs and toads commonly found by human. Frogs and toads could become a bio-indicator of anenvironment. Paliyan Wildlife Sanctuary is a forest area which posses several animal to protect and it’slocated in Gunungkidul Regency, Province of DIY. The diversity of frogs and toads in this wildlifesanctuary is not yet recorded and published. The aim of this research is to understand the diversity of frogsand toads in the area of Paliyan Wildlife Sanctuary. The results there were 9 species of frogs and toads, i.e.,Duttaphrynus melanostictus, Ingerophrynus biporcatus, Fejervarya limnocharis, Kaloula baleata,Occidozyga lima, Occidozyga sumatrana, Microhyla orientalis, Microhyla palmipes and Polypedatesleucomystax. The diversity of frogs and toads in the wildlife sanctuary is moderate according to theShannon-Wiener Index with value: 1,43. Area of Paliyan Wildlife Sanctuary is a suitable habitat for frogsand toads due to its location with dense forest, bushes, rivers, lakes and pools as well as least humanactivities.
Keanekaragaman Jenis Herpetofauna di Kawasan Ekowisata Goa Kiskendo, Kulonprogo, Provinsi Daerah Istimewa Yogyakarta Tony Febri Qurniawan; Rury Eprilurahman
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 17, No 2 (2012): June 2012
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v17i2.132

Abstract

Perubahan ekosistem dan kondisi lingkungan sangat memengaruhi kehidupan herpetofauna (amfibi dan reptil). Salah satu wilayah yang diduga masih cukup layak untuk menunjang kehidupan herpetofauna adalah Kawasan Ekowisata Goa Kiskendo, Kulonprogo, Daerah Istimewa Yogyakarta. Penelitian tentang keanekaragaman jenis herpetofauna di daerah tersebut perlu dilakukan untuk mendapatkan informasi jumlah jenis dan sebarannya sebagai data awal keanekaragaman fauna. Penelitian dilaksanakan selama enam bulan (November 2007–April 2008) dengan metode pengamatan langsung baik siang maupun malam. Berdasarkan penelitian diperoleh 42 jenis herpetofauna yang terdiri atas 29 jenis reptil dan 13 jenis amfibi. Reptil yang diperoleh terdiri atas kadal (empat suku) dan ular (lima suku), sedangkan untuk amfibi terdiri dari enam suku. Dua jenis amfibi (Limnonectes kuhlii dan Michrohyla achatina) diketahui merupakan jenis endemik Pulau Jawa. Berdasarkan penelitian ini dapat disimpulkan bahwa kondisi ekosistem di kawasan wisata Goa Kiskendo masih cukup bagus sebagai habitat herpetofauna.
Co-Authors A. Fanani Muharromi A. Prima Nugraha Abida, Farahsani Umi Achmad Mustofa Huda Aditya K. Karim Aditya Krishar Karim Aisyah Arimbi Alfarizi, Muhammad Khevin Fathah Alfonsus Toribio Eko Saputro AMIR HAMIDY Amir Hamidy Ananto Puradi Nainggolan Andhika, Rashif Naufal Anita Widianawati Anita Widianawati, Anita Aplina Krismutia Simarmata Assyafiya Salwa Azahra, Safaa Burhan Amirudien Camelia, Naely Muna Christian Manggala Yudha Pratama Dewi, Nur Indah Candra Donan Satria Yudha Donan Satria Yudha Elika Boscha Fania Baeta Roska Khalallia Farahsani Umi Abida Fathiya, Raden Firly Febri Qurniawan, Tony Fidelis Triki Sadewa Aritona G. A. B. Y. P. Cahyadi Haekal, Muhammad Hanan Asyrofi Hastin Ambar Asti Herdhanu Jayanto Ikhsan Fauzi Wiryawan Herdhanu Jayanto Ikhsan Fauzi Wiryawan, Herdhanu Jayanto Herin Yoga Lesti Herofi Azhar Hestin Ambar Asti Huda, Achmad Mustofa I., Purwo Setio Imam Sujadi Iman Akbar Muhtianda Iman Akbar Muhtianda Judith, Tiara Putria Khalallia, Fania Baeta Roska Krisogonus Yudha Parama Putra Kusumardiastuti Kusumardiastuti Laksmindra Fitria Lesti, Herin Yoga Lukman Hakim Lukman Hakim Lutfiyah Rizqi Fajriana M Zulfiqar Meizar Pratama M. Fahrul Hilmi Maghfira Aulia Devi Maharani, Syifa Evilia Malya Adzillina Silmi Misbahul Munir Muhammad Fahrul Hilmy Muharromi, A. Fanani Munajib, Ibnu Ainun Nabila Nailatus Sakina, Nabila Nailatus Nafiah, Septi Lutfiatun Naila Nabila Rahmani Ni Made Sri Winasti Niken Satuti Nur Handayani Niken Satuti Nur Handayani Nila Qudsiyati Nopitasari, Sri Nugraha, A. Prima Nugraha, Rizki Nurrochmah Wisudhaningrum Pangestuti, Azwa Yuliananda Parama Putra, Krisogonus Yudha Pasaribu, Callista Nadya Noel Paul J. Kawatu Pinkan Calista Prihantono, Subekti Puji Lestari Purwo Setio I. Raden Firly Fathiya Ragil Pinasti Rahino, Wintang Gagat Bangun Rich G. Simanjuntak Rini Rahmawati Rizki Nugraha Rosichon Ubaidillah Rosita Dwi Putri Suranto Septi Lutfiatun Nafiah Setiawan Silva Pambudi setyaningrum, Sri Siti Markhamah Sri Nopitasari Subekti Prihantono Suranto, Rosita Dwi Putri Syifa Evilia Maharani Tobing, Vega Felicia Tony Febri Qurniawan Tony Febri Qurniawan Tony Febri Qurniawan Tri Trijoko Trijoko (Trijoko) Trijoko T Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Tuty Arisuryanti Vega Felicia Tobing Vestidhia Yunisya Atmaja Wahyu Tejo Baskoro Wajudi Wajudi Widodo Widodo Wildan Ahmad Nabil Winasti, Ni Made Sri Wulan Rahmani Akmal Yundari, Yundari Zuliyati Rohmah