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All Journal Bioma : Berkala Ilmiah Biologi Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Biogenesis: Jurnal Ilmiah Biologi Journal of Tropical Biodiversity and Biotechnology ZOO INDONESIA Majalah Ilmiah Biologi BIOSFERA: A Scientific Journal Scripta Biologica Nusantara Science and Technology Proceedings Zoo Indonesia BiosciED: Journal of Biological Science and Education Berkala Penelitian Hayati JURNAL BIOLOGI PAPUA Berkala Ilmiah Biologi Genbinesia Journal of Biology Jurnal Riset Daerah
Rury Eprilurahman
Fakultas Biologi, Universitas Gadjah Mada
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Economics, Econometrics & Finance Education Engineering Environmental Science Health Professions Immunology & microbiology Law, Crime, Criminology & Criminal Justice Materials Science & Nanotechnology Medicine & Pharmacology Public Health Social Sciences Veterinary Other

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Karakter Morfologis dan Molekular Macrobrachium spp. dari Sungai Opak Daerah Istimewa Yogyakarta Trijoko T; Niken Satuti Nur Handayani; Anita Widianawati; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 3 No 1 (2015)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v3i1.559

Abstract

Several rivers flow across Daerah Istimewa Yogyakarta (DIY includes Opak River which it’s upstream located on Merapi Volcano area. The river has a lot of biological resources, includes prawns. Freshwater prawns (Macrobrachium spp.) has important role in maintaining the balance of freshwater ecosystems. The purpose of this research was to determine species diversity of Macrobrachium spp. and to understand the morphological and molecular characters of them. Phenetic similarity was analyzed using 74 morphological characters, ISSR1 and ISSR3 primers. The results were analyzed using a program MVSP 3.1 (Multi- Variate Statistical Package) to obtain a dendogram that showed both intra-and interspecies similarity of Macrobrachium spp. Six species of Genus Macrobrachium were identified, they are Macrobrachium pilimanus, M. sintangense, M. lanchesteri, M. cowlesi, M. latidactylus, and M. equidens. Both morphological and molecular analyses show two major clusters with the similarity of 55.6% for morphology and 21.52% for molecular. Based on morphological and molecular characters analysis, we concluded that phenetic similarity of Macrobrachium spp. in Opak River was affected by the morphological structure of the second pereiopod, habitat type, size and number of eggs, as well as the type of larval development.Keywords: characters, Macrobrachium, molecular, morphology, Opak River
Keanekaragaman Jenis Kepiting (Decapoda: Brachyura) di Sungai Opak, Daerah Istimewa Yogyakarta Rury Eprilurahman; Wahyu Tejo Baskoro; Trijoko T
Biogenesis: Jurnal Ilmiah Biologi Vol 3 No 2 (2015)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v3i2.934

Abstract

Crabs has been known inhabiting diverse habitat. Crabs were found in the sea, and some other species were found in terrestrial or freshwater. Crabs is one of the important biotic components of the aquatic ecosystem as detrivore. Opak River is one of the major rivers in the Daerah Istimewa Yogyakarta (DIY), which has a various conditions and direct impact on biodiversity including the diversity of crabs. Up to now, there is no database of crab species from Yogyakarta. The aim of this research was to determine the diversity of crabs from Opak River. Research were carried out for 5 months between June and October 2013. Samples were characterized and identified morphologically. The results show that there are five species of crabs in Opak River. Parathelphusa convexa (De Man, 1879) was commonly found from upstream to downstream. Varuna litterata (Fabricius, 1798) was found in downstream to estuary (brackish water). The other three species were only found in the estuary area viz. Ocypode ceratophthalma (Pallas, 1772), Episesarma versicolor (Tweedie, 1940), and Scylla serrata (Forsskål, 1775). It can be concluded that diversity of crabs in the Opak River estuary area is higher than the upstream and downstream areas.Keywords: brachyuran, crabs, diversity, morphology, Opak River
Karakterisasi Udang Air Tawar Anggota Genus Macrobrachium Bate, 1868 (Decapoda: Palaemonidae) dari Air Terjun Tegenungan, Gianyar, Bali Berbasis Data Morfologi dan Molekular Wildan Ahmad Nabil; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 6 No 2 (2018)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v6i2.5135

Abstract

Macrobrachium is one of prawn genera which has largest species number in family Palaemonidae, with some species of this genus being important commodity in aquaculture. Morphological characters for identification of this genus depend on environmental condition, growth phase, sex, and social dominance. This makes morphological identification on this genus quite difficult and tricky. Alternative approaches are required for better methods of Macrobrachium identification. DNA barcoding using 16S mitochondrial rRNA appears to be one promising method for Macrobrachium identification. This research aims to identify Macrobrachium from Tegenungan Waterfall using morphological and molecular analysis. Samples were taken from 4 sampling sites beneath the waterfall. All specimens were identified using several morphological identification methods. Specimen CR 07a and CR 10 were identified using molecular method. The molecular analysis utilized 16Sar (5’-CGCCTGTTTATCAAAAACAT-3’) as forward primer and 16Sbr (5’-CCGGTCTGAACTCAGAT-CACGT-3’) as reverse primer. From 11 specimens, 10 were identified as Macrobrachium. Specimen CR 07a was identified morphologically as M. horstii. According to BLAST analysis, specimen CR 10 was recognized as M. horstii with similarity up to 99% to GenBank specimens (JF310718.1 dan FM986616.1). Specimen CR 07a only reach 97% similarity to both GenBank specimens. Genetic distance analysis between specimen CR 07a and CR 10 assumed high genetic diversity, or even cryptic species indication in M. horstii population of Tegenungan Waterfall.  
Geometric Morphometrics Analysis of Chelae and Carapace of the Freshwater Prawn Macrobrachium Bate, 1868 Rich Gemilang Simanjuntak; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 1 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i1.7803

Abstract

The shape of chelae and carapace can be used to distinguish between species of prawn. This study aims to determine the variations in the shape of chelae and carapace in several species belonging to the genus Macrobrachium using analysis of geometric morphometric. This study uses photos of specimens that have been processed with several TPS software. Data analyzed statistically by PCA using the MorphoJ software. Clustering analysis using UPGMA method using PAST software. The results showed the carapace shape grid deformation varied at the tip of the rostrum, the tip of the ocular spine and the lower curvature of the front of the carapace, and the base spines of rostrum. Grid deformation in the shape of chelae varies at the tip of the pollex, the junction between the pollex and the manus on the inferior margin of the propodus, the upper and lower points marking the junction of the dactylus with the propodus. PCA shows the total variation of the carapace shape is 82.66% which is divided into PC1: 75.11% and PC2: 7.55%. While the total variation of the shape of chelae is 87.56% which is divided into PC1: 55.49% and PC2: 32.07%. Clustering analysis shows the grouping of populations of Macrobrachium, the first group is M. latidactylus and M. sintangense, the second group includes M. horstii and M. latimanus. M. lar is a species that shows the similarity of the shape of the carapace and chelae with the two groups. M. rosenbergii and M. pilimanus are on different lines.
Monitoring Anurans Diversity along Code River, Province of Daerah Istimewa Yogyakarta, Indonesia Donan Satria Yudha; Wulan Rahmani Akmal; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.10174

Abstract

The research about frogs and toads diversity in the Code River, Province of Daerah Istimewa Yogyakarta (DIY) had been done in 2012 (Yudha et al., 2013). Now, after five years passed, we conduct monitoring activities for updating its diversity and distribution. After five years, we consider that there are many changes along the river that influenced habitat condition for frogs and toads which live along and near the river. Some of the changes are unused land became human settlement or paddy fields and wasteland. The purpose of this research is to monitor the diversity of frogs and toads after five years along Code River. The method used was acoustic and visual encounter survey (VES). We have done total of 10 days of sampling. Each day we did two times sampling, during the day and night. Results show that the species number of frogs and toads found in 2012 were slightly higher compare to 2017. The frogs and toads on upstream part were diverse in 2017 compare to 2012 due to natural restoration of riparian vegetation occur on upstream. The frogs and toads on midstream part were less diverse in 2017 compared to 2012 due to increasing human activities near the river and less riparian vegetation. The frogs and toads on downstream part were also less diverse in 2017 compared to 2012 due to increasing human activities near the river and more household waste stuck on riparian vegetation. There was variation of anurans diversity after five years due to changing on physical condition of the river and human activities near the river.
Morphological and molecular characters of Cherax quadricarinatus (von Martens, 1868) from Sermo Reservoir and Tambakboyo Retention Basin, Daerah Istimewa Yogyakarta, Indonesia Rury Eprilurahman; Aplina Krismutia Simarmata; Lukman Hakim; Trijoko Trijoko
Biogenesis: Jurnal Ilmiah Biologi Vol 9 No 1 (2021)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v9i1.16612

Abstract

The Australian red claw freshwater crayfish, Cherax quadricarinatus is one of the most widely distributed and cultivated freshwater crayfish due to its high tolerance towards various environmental conditions. Native to North Australia and South Papua New Guinea, this crayfish was found in Tambakboyo Retention Basin in 2016 and Sermo Reservoir in 2019. This research was aimed to identify the morphological and molecular characters of  C. quadricarinatus collected from Sermo Reservoir and Tambakboyo Retention Basin, Yogyakarta. The genetic information of the samples was compared to Australian red claw freshwater crayfish currently available. The methodology used for this research are morphological, morphometrical, meristic identification, and molecular identification using the PCR method. The primer used to be 1471 primers as the forward primer and 1472 primers as the reverse primer. In conclusion, all six specimens obtained were identified to be C. quadricarinatus. Morphological analysis using UPGMA showed that all specimens were formed one big cluster and has the highest similarity index (1.00). Molecular analysis using BLAST showed that specimen from Sermo Reservoir was 98.96% identical to C. quadricarinatus and specimen from Tambakboyo Retention Basin was 100% identical to C. quadricarinatus. Thus concluding that based on their morphological and molecular character, all samples of this study were C.  quadricarinatus. This finding also contributes to the distribution information of C. quadricarinatus in Daerah Istimewa Yogyakarta
Keanekaragaman Jenis Herpetofauna di Kawasan Ekowisata Goa Kiskendo, Kulonprogo, Provinsi Daerah Istimewa Yogyakarta Tony Febri Qurniawan; Rury Eprilurahman
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 17, No 2 (2012): June 2012
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v17i2.132

Abstract

Perubahan ekosistem dan kondisi lingkungan sangat memengaruhi kehidupan herpetofauna (amfibi dan reptil). Salah satu wilayah yang diduga masih cukup layak untuk menunjang kehidupan herpetofauna adalah Kawasan Ekowisata Goa Kiskendo, Kulonprogo, Daerah Istimewa Yogyakarta. Penelitian tentang keanekaragaman jenis herpetofauna di daerah tersebut perlu dilakukan untuk mendapatkan informasi jumlah jenis dan sebarannya sebagai data awal keanekaragaman fauna. Penelitian dilaksanakan selama enam bulan (November 2007–April 2008) dengan metode pengamatan langsung baik siang maupun malam. Berdasarkan penelitian diperoleh 42 jenis herpetofauna yang terdiri atas 29 jenis reptil dan 13 jenis amfibi. Reptil yang diperoleh terdiri atas kadal (empat suku) dan ular (lima suku), sedangkan untuk amfibi terdiri dari enam suku. Dua jenis amfibi (Limnonectes kuhlii dan Michrohyla achatina) diketahui merupakan jenis endemik Pulau Jawa. Berdasarkan penelitian ini dapat disimpulkan bahwa kondisi ekosistem di kawasan wisata Goa Kiskendo masih cukup bagus sebagai habitat herpetofauna.
Keanekaragaman Jenis Kadal dan Ular (Squamata: Reptilia) di Sepanjang Sungai Code, Daerah Istimewa Yogyakarta Donan Satria Yudha Rury Eprilurahman; Herdhanu Jayanto Ikhsan Fauzi Wiryawan
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 1, No 1 (2016): February 2016
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v1i1.710

Abstract

Kadal dan ular adalah dua kelompok hewan anggota Ordo Squamata, Kelas Reptilia. Dua kelompok hewan reptil ini secara umum hidupnya dekat dengan air, mereka sering sekali ditemukan di dalam dan di sekitar sungai. Beberapa jenis ular dan kadal tersebut sering dimanfaatkan untuk dijadikan hewan peliharaan dan kadang dikonsumsi.  Sungai Code merupakan salah satu sungai yang melewati Kota Yogyakarta. Hulu Sungai Code disebut Sungai Boyong dan  hilir sungai Code menyatu dengan  Sungai Opak di daerah Bantul. Permasalahan yang diangkat dalam penelitian ini adalah bagaimanakah keanekaragaman jenis anggota Ordo Squamata di sepanjang Sungai Boyong-Code wilayah Propinsi D.I. Yogyakarta? Berdasarkan permasalahan yang timbul,  maka penelitian ini bertujuan mengetahui keanekaragaman jenis reptil anggota Ordo Squamata penghuni tepian Sungai Code. Pengambilan sampel di sepanjang Sungai Boyong-Code dari hulu hingga hilir menggunakan gabungan beberapa metode, yaitu VES (Visual Encounter Survey),  River bank cruising, dan transek. Sampling secara umum dibagi tiga bagian yaitu bagian hulu, tengah dan hilir. Hasil yang diperoleh adalah 8 spesies anggota Subordo Lacertilia (kadal) dan 10 spesies anggota Subordo Serpentes (ular). Berdasarkan hasil tersebut dapat diketahui bahwa Sungai Boyong-Code merupakan habitat yang cocok bagi anggota Ordo Squamata.
Keanekaragaman Jenis Katak dan Kodok (Amphibia: Anura) di Sungai Gadjah Wong, Daerah Istimewa Yogyakarta Donan Satria Yudha* Rury Eprilurahman, Ayu Maulida Sukma Sekar Arum Setyaningrum
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 2, No 2 (2017): June 2017
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v2i2.1657

Abstract

Penelitian mengenai keanekaragaman katak dan kodok di sepanjang daerah sungai di Yogyakarta telah dilaksanakan oleh Yudha, dkk (2013) di Sungai Code dan Yudha, dkk (2014) di Sungai Opak oleh. Sungai Gadjah Wong merupakan salah satu sungai besar dan penting di Propinsi Daerah Istimewa Yogyakarta. Penelitian mengenai keanekaragaman katak dan kodok di Sungai Gadjah Wong belum banyak dipublikasikan. Penelitian ini bertujuan mengetahui keanekaragaman jenis katak dan kodok (Amphibia: Anura) yang menempati Sungai Gadjah Wong sebagai habitatnya. Pengambilan sampel di sepanjang Sungai Gadjah Wong dari hulu hingga hilir menggunakan metode: VES (Visual Encounter Survey), river bank cruising, dan transek. Sampling secara umum dibagi menjadi tiga bagian, bagian hulu, tengah dan hilir. Hasil yang diperoleh yaitu 6 jenis katak dan kodok (Amphibia: Anura), terdiri dari Chalcorana chalconota, Occidozyga sumatrana, Fejervarya limnocharis, Polypedates leucomystax, Duttaphrynus melanostictus, dan Ingerophrynus biporcatus. Semua katak dan kodok yang dijumpai tersebut adalah jenis yang umum dijumpai. Dari keenam katak tersebut dapat diketahui habitatnya yaitu: 3 jenis katak akuatik dan semi-akuatik, dan 1 jenis katak arboreal serta 2 jenis katak terrestrial. Berdasarkan hasil tersebut dapat diketahui bahwa Sungai Gadjah Wong merupakan habitat yang cukup sesuai bagi sebagian jenis katak dan kodok.
Karakteristik Karapas dan Chela sebagai Alat Identifikasi Fosil Kepiting (Decapoda: Brachyura) yang ditemukan di Jawa Donan Satria Yudha; Krisogonus Yudha Parama Putra; Rury Eprilurahman
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 6, No 1 (2021): February 2021
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v6i1.2480

Abstract

Kepiting infraordo Brachyura dikelompokkan ke dalam 53 familia yang tersebar di seluruh dunia. Di Indonesia dapat ditemukan 40 familia kepiting non air tawar dan tiga familia endemik kepiting air tawar, yaitu: Potamidae, Gecarcinudae, dan Parathelpusidae. Karapas dan capit (chela) merupakan bagian tubuh kepiting yang dapat digunakan untuk identifikasi taksonomi. Beberapa fragmen fosil kepiting yang dijumpai di Indonesia biasanya berupa bagian karapas dan capit. Panduan mengenai karakter morfologi karapas dan capit anggota infraordo Brachyura belum tersedia terutama untuk identifikasi fosil kepiting di Indonesia, sehingga perlu dikaji. Oleh karena itu, penelitian ini bertujuan untuk mengkaji karakter morfologi karapas dan capit sebagai karakter diagnostik kepiting sehingga dapat dimanfaatkan dalam identifikasi fosil kepiting. Spesimen yang diteliti adalah koleksi dari Laboratorium Sistematika Hewan Fakultas Biologi, Universitas Gadjah Mada. Metode yang digunakan yaitu komparasi morfologi dan karakteristik dari karapas dan capit serta studi referensi. Hasil penelitian menunjukkan bahwa karakter karapas dan capit, meliputi: bentuk karapas, ornamentasi karapas bagian lateral dan dorsal, salah satu capit membesar, tuberkula pada gigi capit, dan bentuk capit, dapat digunakan untuk mengidentifikasi jenis kepiting infraordo Brachyura dan dapat dijadikan referensi untuk identifikasi fragmen fosil kepiting yang dijumpai di Indonesia terutama di Pulau Jawa.
Co-Authors A. Fanani Muharromi A. Prima Nugraha Abida, Farahsani Umi Achmad Mustofa Huda Aditya K. Karim Aditya Krishar Karim Aisyah Arimbi Alfarizi, Muhammad Khevin Fathah Alfonsus Toribio Eko Saputro AMIR HAMIDY Amir Hamidy Ananto Puradi Nainggolan Andhika, Rashif Naufal Anita Widianawati Anita Widianawati, Anita Aplina Krismutia Simarmata Ashari, Imelda Tri Assyafiya Salwa Ayunda, Filda Mega Azahra, Safaa Burhan Amirudien Camelia, Naely Muna Christian Manggala Yudha Pratama Desmi, Nola Dewi, Nur Indah Candra Donan Satria Yudha Donan Satria Yudha Dwi Nuryan Dani Elika Boscha Emmanuel Glodias Boggy Sanjaya Erieco, Luthfi Fania Baeta Roska Khalallia Farahsani Umi Abida Fathiya, Raden Firly Fauzi, Luthfi Febri Qurniawan, Tony Fidelis Triki Sadewa Aritona G. A. B. Y. P. Cahyadi Haekal, Muhammad Hanan Asyrofi Hanik, Nureini Hastin Ambar Asti Herdhanu Jayanto Ikhsan Fauzi Wiryawan Herdhanu Jayanto Ikhsan Fauzi Wiryawan, Herdhanu Jayanto Herin Yoga Lesti Herofi Azhar Hestin Ambar Asti Huda, Achmad Mustofa I., Purwo Setio Ikhsan, Muhammad Nur Imam Sujadi Iman Akbar Muhtianda Iman Akbar Muhtianda Judith, Tiara Putria Khalallia, Fania Baeta Roska Krisogonus Yudha Parama Putra Kusmardiastuti Kusumardiastuti Kusumardiastuti Laksmindra Fitria Lesti, Herin Yoga Lukman Hakim Lukman Hakim Lutfiyah Rizqi Fajriana M Zulfiqar Meizar Pratama M. Fahrul Hilmi Maghfira Aulia Devi Maharani, Syifa Evilia Malya Adzillina Silmi Misbahul Munir Muhammad Fahrul Hilmy Muharromi, A. Fanani Munajib, Ibnu Ainun Nabila Nailatus Sakina, Nabila Nailatus Nafiah, Septi Lutfiatun Naila Nabila Rahmani Ni Made Sri Winasti Niken Satuti Nur Handayani Niken Satuti Nur Handayani Nila Qudsiyati Nithoghani Hafni, Zatun Nopitasari, Sri Nugraha, A. Prima Nugraha, Rizki Nurrochmah Wisudhaningrum Pangestuti, Azwa Yuliananda Parama Putra, Krisogonus Yudha Pasaribu, Callista Nadya Noel Paul J. Kawatu Pinkan Calista Prihantono, Subekti Puji Lestari Purwo Setio I. Putra, Rachmat Aditama Dwija Rachmanto, Darren Nicholas Raden Firly Fathiya Ragil Pinasti Rahino, Wintang Gagat Bangun Rahmanto, Darren Nicholas Rich G. Simanjuntak Rini Rahmawati Rizki Nugraha Rosichon Ubaidillah Rosita Dwi Putri Suranto Septi Lutfiatun Nafiah Setiawan Silva Pambudi setyaningrum, Sri Siti Markhamah Sri Nopitasari Subekti Prihantono Suranto, Rosita Dwi Putri Susilo Irwanjasmoro Syifa Evilia Maharani Tobing, Vega Felicia Tony Febri Qurniawan Tony Febri Qurniawan Tony Febri Qurniawan Tri Trijoko Trijoko (Trijoko) Trijoko T Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Trijoko Tuty Arisuryanti Vega Felicia Tobing Vestidhia Yunisya Atmaja Wahyu Tejo Baskoro Wajudi Wajudi Wibowo, Safira Pramesti Widodo Widodo Wildan Ahmad Nabil Winasti, Ni Made Sri Wulan Rahmani Akmal Yundari, Yundari Zuhaida, Hasna Zuliyati Rohmah