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All Journal HAYATI Journal of Biosciences Prosiding Seminar Nasional MIPA Biotika: Jurnal Ilmiah Biologi BIOTROPIA - The Southeast Asian Journal of Tropical Biology AL KAUNIYAH Biogenesis: Jurnal Ilmiah Biologi AGRIVITA, Journal of Agricultural Science Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (Journal of Natural Resources and Environmental Management) JURNAL ISTEK Journal of Tropical Biodiversity and Biotechnology Pro-Life REINWARDTIA BERITA BIOLOGI JURNAL BIOLOGI INDONESIA BIOEDUSCIENCE Jurnal Biologi Tropis Bioma : Jurnal Biologi Indonesia Makara Journal of Science Jurnal Indonesia Sosial Sains Reinwardtia Berita Biologi
Andi Salamah
Department Of Biology, Faculty Of Mathematic And Natural Sciences, Universitas Indonesia, Depok 16424, Indonesia
Agriculture, Biological Sciences & Forestry Humanities Astronomy Biochemistry, Genetics & Molecular Biology Chemistry Computer Science & IT Decision Sciences, Operations Research & Management Earth & Planetary Sciences Economics, Econometrics & Finance Education Energy Environmental Science Immunology & microbiology Law, Crime, Criminology & Criminal Justice Library & Information Science Materials Science & Nanotechnology Neuroscience Physics Social Sciences Veterinary

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Management of Pyrrosia Mirb. (Polypodiaceae) Fern Specimens in Herbarium Depokensis (UIDEP) Universitas Indonesia, Depok Atria, Mega; Rahmandika, Ghifari; Salamah, Andi; Saifudin, Saifudin; Putrika, Afiatry
Al-Kauniyah: Jurnal Biologi Vol. 18 No. 1 (2025): AL-KAUNIYAH JURNAL BIOLOGI
Publisher : Department of Biology, Faculty of Science and Technology, Syarif Hidayatullah State Islami

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15408/kauniyah.v1i1.40499

Abstract

AbstractThe herbarium harbors collections of preserved plants used for scientific purposes. It is important to keep information about plants in a valid herbarium collection. This study aims to establish a valid collection and database of Pyrrosia stored in Herbarium Depokensis (UIDEP) through herbarium management. The management process includes taxonomic validation, specimen revitalization, and digitization. Taxonomic validation results showed there were 3 species of Pyrrosia namely P. piloselloides, P. lanceolata, and P. longifolia. These three species can be distinguished by rhizome scales, the shape of the lamina, and soral position. Physical examination throughout specimens showed several problems including loose specimen parts and specimen damage due to insects. Almost all collections (49 out of 59 specimens) did not include fertile lamina which is an important identifying character in Pyrrosia. To complete the herbarium data, 10 new Pyrrosia samples were collected at Green Spaces (RTHK) in Universitas Indonesia. All valid data and pictures undergo a digitization process. Those digitized data were then uploaded to the Herbarium UIDEP website (ruangkoleksibiotaui.id). This resulted in a Pyrrosia database that can be widely accessed by the public.AbstrakHerbarium menyimpan koleksi tanaman yang diawetkan yang digunakan untuk tujuan ilmiah. Penting untuk menyimpan informasi tentang tanaman dalam koleksi herbarium yang valid. Penelitian ini bertujuan untuk membangun koleksi dan database valid Pyrrosia yang disimpan di Herbarium Depokensis (UIDEP) melalui pengelolaan herbarium. Proses pengelolaannya meliputi validasi taksonomi, revitalisasi spesimen, dan digitalisasi. Hasil validasi taksonomi Pyrrosia menunjukkan terdapat 3 spesies, yaitu P. piloselloides, P. lanceolata, dan P. longifolia. Ketiga spesies ini dapat dibedakan berdasarkan sisik rimpang, bentuk lamina, dan letak soral. Pemeriksaan fisik pada seluruh spesimen menunjukkan beberapa permasalahan antara lain bagian spesimen yang lepas dan kerusakan spesimen akibat serangga. Hampir semua koleksi (49 dari 59 spesimen) tidak mencantumkan lamina subur yang merupakan karakter pengidentifikasi penting pada Pyrrosia. Untuk melengkapi data herbarium, dilakukan pengumpulan 10 sampel Pyrrosia baru di Ruang Terbuka Hijau (RTHK) Universitas Indonesia. Semua data dan gambar yang valid menjalani proses digitalisasi. Data digital tersebut kemudian diunggah ke website Herbarium UIDEP (ruangkoleksibiotaui.id). Hal ini menghasilkan database Pyrrosia yang dapat diakses secara luas oleh masyarakat. 
ANALISIS KARAKTERISTIK VEGETATIF DARI EMPAT VARIETAS PADI DALAM PERLAKUAN CEKAMAN KEKERINGAN [Vegetative Characteristics Analysis of Four Rice Varieties Under Drought Stress] Puspitaningrum, Hardini; Salamah, Andi
Berita Biologi Vol 22 No 1 (2023): Berita Biologi
Publisher : BRIN Publishing (Penerbit BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.55981/beritabiologi.2023.797

Abstract

Rice plants that are resistant to drought stress and can be grown on dry land, are needed to increase national food security. A method which has been widely used to determine drought tolerance levels of plants is the morphological analysis. The vegetative characteristics analysis of rice varieties thought to be drought-tolerant, such as West Sumba rice varieties (Pare Lambem and Pare Bakato Kaka), INPARI 32 and INPARI 42, is known to have never been done before. This study aims to identify rice varieties that show the highest stress tolerance based on vegetative performance data through drought stress treatments. The research started with germinating seeds in two treatments (control and PEG 6000 20%) for seven days. The germinated seeds were then transferred to the planting medium and watered every three days for samples treated with PEG 6000 20% after 14 DAP (drought treatment). The vegetative performance data was then processed statistically by calculation of the Fernandez index (1993) or the t-test (α<0.05). The results showed that the percentage of germination, radicle weight, and the average number of leaves (35 DAP) in each variety grouped into the tolerant category. For the leaf curvature scores, the Pare Lambem variety is classified into the sensitive category (score 5), while the other three varieties were classified as Tolerant-category (score 1). Plant height and leaf length values at 7 DAP and 35 DAP showed the same pattern as the leaf curvature score that Pare Lambem showed a significant difference between the control and drought treatments based on the t-test (sensitive category). In contrast, other varieties showed a tolerant category. Based on the assessment of several test characteristics, Pare Lambem was classified into the slightly tolerant category (42.8%), while other varieties were classified into the tolerant category (85.7%).
DINAMIKA PERTUMBUHAN POHON DI HUTAN RESTORASI BODOGOL TAMAN NASIONAL GUNUNG GEDE PANGRANGO, JAWA BARAT Sadili, Asep; Salamah, Andi; Mirmanto, Edi; Kartawinata, Kuswata
Berita Biologi Vol 22 No 2 (2023): Berita Biologi
Publisher : BRIN Publishing (Penerbit BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.55981/beritabiologi.2023.812

Abstract

The Restored Forest (RF) in Bodogol, Gunung Gede Pangrango National Park (GGPNP) is located in the degraded lowland forest area. The Bodogol RF constituted the area of the ecosystem restoration program, where the initial tree planting was carried out by Mrs. Megawati Soekarnoputri the 5th President of the Republic of Indonesia. In that restored forest area, a study was conducted by establishing one hektare plots. We recorded 26 tree species and 16 families, including 14 tree species that were used in the restoration, four cultivated species, and eight species that naturally enter the site as new arrival (recruitment). The total basal area was 7.47 m2/Ha and tree density was 256 trees/Ha. The mean diameter growth was 1.78 cm/year, and the highest diameter growth was Hibiscus tilliaceus (2.42 cm/year). The mean total height growth was 0.52 m/year, and the highest was Paraserianthes falcataria (0.85 m/year). The density of Toona sureni was very high (61 trees/Ha) and in the future it ay dominate the forest will, therefore other tree species native to Mt. Gede-Pangrango should be planted to enrich the present restored forest so as to encourage the development of mixed lowland or montane forests similar to the original climax forests with high species diversity. Structurally, about 50 % of the RF has been achieved, but species composition still needs further enrichment either by active intervention of planting native TNGGP species if deemed necessary or by allowing succession to take place naturally, although it will take a very long time.
TRAIT-BASED STUDIES ON THE ABUNDANCE AND CANOPY SHADE PREFERENCES OF ASTERACEAE SPECIES IN CIBODAS BOTANICAL GARDEN Decky Indrawan Junaedi; Najwa Wafiyah Az Zahra; Andi Salamah
Bioma Vol. 15 No. 1 (2019): Bioma
Publisher : LPPM Universitas Negeri Jakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (355.641 KB) | DOI: 10.21009/Bioma15(1).2

Abstract

ABSTRACT Knowledge of community structures and capacity to differentiate invasive from non-invasive species are essential for invasive species management. Specific Leaf Area (SLA) is a potential proxy to differentiate invasive from non-invasive species. This study aims to identify the relationship between Important Value Index (IVI) with SLA of Asteraceae species, and predict Asteraceae habitat preference based on shade characteristics at the Cibodas Botanical Garden. There is a positive correlation between SLA and IVI value of Asteraceae species in shaded habitat. The Asteraceae species that prefer shaded habitat tend to have larger SLA relative to species in open area (odds ratio = 2.754). This study showed that SLA is a potential proxy to indicate plant abundance and an informative proxy to predict habitat preferences in CBG ecosystem. These traits information are crucial for invasive exotic plant species management in CBG particularly and tropical botanic gardens in general. Keywords: invasive species, exotic species, SLA, logistic regression, trait, Cibodas, Asteraceae
Optimizing DNA Extraction Methods from Leaf and Wood Tissues to Support Dipterocarp Conservation and Sustainable Forest Management Arrofaha, Nawwall; Rachmat, Henti Hendalastuti; Dwiyanti, Fifi Gus; Adinugroho, Wahyu Catur; Siregar, Iskandar Zulkarnaen; Kamal, Irsyad; Syaputra, Dhika; Salamah, Andi
Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (Journal of Natural Resources and Environmental Management) Vol 16 No 1 (2026): Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (JPSL)
Publisher : Pusat Penelitian Lingkungan Hidup, IPB (PPLH-IPB) dan Program Studi Pengelolaan Sumberdaya Alam dan Lingkungan, IPB (PS. PSL, SPs. IPB)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jpsl.16.1.13

Abstract

Dipterocarpaceae are economically important, contributing over 85% of Indonesia's timber exports. However, this crucial resource is increasingly threatened by illegal logging, habitat destruction, and the illegal timber trade, which jeopardize dipterocarp population. Furthermore, conservation efforts utilizing genetic and forensic techniques often encounter substantial challenges due to the complexities in DNA extraction protocol. To address this, the study aimed to enhance the efficiency of DNA extraction methodologies by comparing two methods: the modified cetyltrimethylammonium bromide (CTAB) and the Genomic DNA Mini Kit (Plant) from Geneaid Biotech Ltd. The research focused on leaf and wood samples from two species, spesifically Rubroshorea leprosula (Miq.) P.S.Ashton & J.Heck and Shorea laevis Ridl. For each of these species, five leaf and five wood samples were extracted using both methods. The quality of the DNA extraction was evaluated using electrophoresis and quantified with a Qubit fluorometer. Higher DNA concentrations were obtained with the modified CTAB method compared to the GeneAid kit for both R. leprosula and S. laevis, particularly in leaf tissue. The GeneAid kit consistently exhibited low DNA yield efficiency compared to the modified CTAB method for both species. Additionally, PCR amplification of both leaf and wood samples confirmed that the extracted DNA was suitable formolecular analyses. These findings not only contributed to laboratory applications but also served as practical tools for species identification and genetic conservation for sustainable forest management and law enforcement.
DIVERSITY, ECOLOGY AND CONSERVATION STATUS OF NEPENTHES IN WEST SUMATRA PROVINCE, INDONESIA Mansur, Muhammad; Salamah, Andi; Mirmanto, Edi; Brearley, Francis Q
BIOTROPIA Vol. 30 No. 2 (2023): BIOTROPIA Vol. 30 No. 2 August 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1896

Abstract

Nepenthes is the largest carnivorous plant genus present in Indonesia. There are 39 species of Nepenthes pitcher plants recorded in Sumatra from lowland to montane forests, and 34 of them are endemic; this represents the greatest species diversity of Nepenthes after Borneo. Field studies were conducted in 2021 and 2022 to increase our knowledge of the diversity, habitats and distributions of Nepenthes in West Sumatra province. Twenty-three species of Nepenthes were recorded from the province, consisting of 15 highland species, 4 mid-elevation species and 4 lowland species. Ecophysiological studies conducted at Bukit Malalak showed clumped distributions of N. bongso, N. dubia, N. eustachya and N. rhombicaulis. Foliar and pitcher fluid nutrient concentrations were found to be similar to those cited in other recent studies although growth rates were slightly more rapid than at Gunung Talang. Bukit Malalak is a new locality for two threatened species, namely N. dubia (CR) and N. rhombicaulis (VU), enlarging their extents of occurrence. In total, nine species from West Sumatra are threatened and conservation actions are urgently needed for these and other Nepenthes species remaining on the island.
Phylogenetic Analysis Cantigi Ungu (Vaccinium Varingifolium (Blume) Miq.) Plant Growing in the Highlands of West Java Based on Internal Transcribed Spacer (ITS) Gene Muhammad Haidar Amrullah; Andi Salamah
Jurnal Indonesia Sosial Sains Vol. 7 No. 7 (2026): Jurnal Indonesia Sosial Sains
Publisher : CV. Publikasi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.59141/jiss.v7i7.2430

Abstract

Cantigi Ungu (Vaccinium varingifolium (Blume) Miq.) is an endemic plant of Java that is found in mountainous areas at altitudes ranging from 1,800 to 2,000 m above sea level. It is known by several local names, including Cantigi Ungu, Mentigi, Manis Rejo, and Delima Manda. To date, genetic data reports on this plant remain limited. Genetic conservation efforts are necessary to ensure the sustainability, availability, and preservation of this plant’s germplasm, as well as to determine its conservation status. This study aims to analyze the phylogenetic relationships of Cantigi Ungu plants growing in the highlands of West Java based on Internal Transcribed Spacer (ITS) gene sequences. The research was conducted on three Cantigi Ungu plants collected from the highlands of West Java, specifically within the Mount Gede Pangrango National Park area, Mount Tangkuban Parahu Nature Park, and Kawah Putih, and their ITS gene sequences were compared. ITS gene amplification was performed using the forward primer ITS_u1 (5′-GGA AGK ARA AGT CGT AAC AAG G-3′) and the reverse primer ITS_u4 (5′-RGT TTC TTT TCC TCT GCT TA-3′). Phylogenetic analysis was conducted using MEGA XI software with the Maximum Likelihood (ML), Minimum Evolution (ME), Neighbor-Joining (NJ), and Maximum Parsimony (MP) methods. The results showed that the Cantigi Ungu samples analyzed in this study belong to the same species as the reference species, Vaccinium varingifolium, with accession number AY274564.1.
Co-Authors Abinawanto Abinawanto Achmad Dinoto Adinugroho, Wahyu Catur Agus Haryadi Anggita R Hafsari Anna Widyastuti Ariyanti Oetari Arrofaha, Nawwall Asep Sadili Asep Sadili Asep Sadili, Asep Atria, Mega Az Zahra, Najwa Wafiyah Bayu Adjie Brearley, Francis Q Citra Karina Windarti Decky Indrawan Junaedi Dee Dee Al Farishy Dian Hendrayanti Dika Migi Priyono Dwiranti, Astari Edi Mirmanto Edi Mirmanto Edi Mirmanto, Edi Edi Mirtanto Endang Sukara Fadilah, Nurrahmi Fifi Gus Dwiyanti Firdha Meidi Irshanty Francis Q Brearly Iriani, Nur Annisa Irshanty, Firdha Meidi Irsyad Kamal ISKANDAR ZULKARNAEN SIREGAR Isnaenisa Rachma Khoiriyah, Istatik Kusumadewi Sri Yulita KUSWATA KARTAWINATA Kuswata Kartawinata Kuswata Kartawinata Lulut Dwi Sulistyaningsih Mansur Halik Marlina Ardiyani Maryanto, Andi Eko Mouleidi Dwi Putri Muhammad Haidar Amrullah MUHAMMAD MANSUR Muhammad Mansur Mutia Syadewi Najwa Wafiyah Az Zahra Niarsi Merry Hemelda Niarsi Merry Hemelda Niarsi Merry Hemelda Nur Laili Pipit Marianingsih Pipit Marianingsih Pipit Marianingsih Priyono, Dika Migi Puspitaningrum, Hardini Putrika, Afiatry Rachmat, Henti Hendalastuti Rahmadina, Amara Rahmandika, Ghifari Ririn Oktarina Saifudin Saifudin Sarah Tsabituddinillah Sarjiya Antonius Siska Apriliani Sulistiani Sulistiani, Sulistiani Syaputra, Dhika TRI JOKO SANTOSO Tri Joko Santoso Tri Joko Santoso Tri Muji Ermayanti WELLYZAR SJAMSURIDZAL WIBOWO MANGUNWARDOYO Windri Handayani Windri Handayani Windri Handayani Wita Wardani Wita Wardani Yuki Ichinose Yuki Ichinose Yuniati, Ratna