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All Journal Journal of Degraded and Mining Lands Management Research Journal of Life Science SELAPARANG: Jurnal Pengabdian Masyarakat Berkemajuan
Syib'li, Muhammad Akhid
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Journal : Research Journal of Life Science

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Comparison of Primer Types to Produce Fungal DNA Fragment from Garlic Plant Root Samples Dewi, Fibrianti Shinta; Abadi, Abdul Latief; Syib'li, Muhammad Akhid
Research Journal of Life Science Vol 10, No 3 (2023)
Publisher : Direktorat Riset dan Pengabdian Masyarakat, Universitas Brawijaya

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21776/ub.rjls.2023.010.03.3

Abstract

Fusarium wilt disease caused by Fusarium oxysporum f.sp cepae is a widespread and dangerous diseases in garlic commodities. The combination of AMF and Bacillus amyloliquefaciens can be an effective solution to reduce losses due to attacks by these pathogens. The PCR technique is initial method that has proven to be significant in detecting fungal target DNA so that the effectiveness of biological agents can be determined. The aim of this study is to compare the types of primers that are effective for use in detecting fungal groups in PCR. This research was conducted in October 2023 - November 2024. The types of primers compared were ITS1-F/ITS4-R and LSU200A-F/LSU476-R with spectophotometry and fluometry quantification. The results show that ITS1-F/ITS4-R forms DNA band with a size of 700 bp, while LSU200A-F/LSU476-R had a size of 290-300 bp. The electropherogram also showed differences in DNA distribution which confirmed the results on agarose more specifically in the range 19-12,999 bp. In general, these results prove that the two types of primers have different abilities in fragmenting target DNA. This knowledge can help in detecting DNA at an early stage which can be used in various analyzes that can help in integrated plant disease management.
Pathogenicity Test and Molecular Characterization of Colletotrichum spp. Fungi Causing Apple Fruit Rot Disease in Malang Regency Maknunin, Lu'lu'il; Abadi, Abdul Latief; Syib'li, Muhammad Akhid
Research Journal of Life Science Vol 10, No 3 (2023)
Publisher : Direktorat Riset dan Pengabdian Masyarakat, Universitas Brawijaya

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21776/ub.rjls.2023.010.03.4

Abstract

Apple (Malus sylvestris Mill) is a key commodity in Malang Regency, Indonesia, because of its role in promoting the agrotourism sector. But fruit rot caused by Colletotrichum spp. poses significant threats to production and its existence. This study aims to identify the causal agents of fruit rot in apple orchards in Pujon District, Malang, using morphological and molecular approaches. Four isolates suspected to be Colletotrichum spp. were obtained from symptomatic apple fruits and characterized through macroscopic, microscopic, and molecular methods, including ITS sequencing. Pathogenicity tests revealed that all isolates induced symptoms on healthy apples, with Colletotrichum siamense confirmed as the primary pathogen via BLAST analysis. These findings emphasize the need for accurate morphological and molecular identification to develop effective management strategies. Further research is recommended to examine the diversity of Colletotrichum species in Malang Regency to inform broader disease control strategies.
Co-Authors Abdul Latief Abadi Achmad Noerkhaerin Putra Ahmad Imron Rozuli Dewi, Fibrianti Shinta Dodyk Pranowo Ito, Satoshi Iva Dewi Lestariningsih, Iva Dewi Karuniawan Puji Wicaksono Kusuma, Adhinugraha Wirayudha Luqman Qurata Aini Maknunin, Lu'lu'il Pamungkas, Bayu Aji Paramyta Nila Permanasari, Paramyta Nila Purba, Dano Rahmi Nurdiani Ramadhan, Varotama Putra Renwarin, Ryan Saitama, Akbar Setyono Yudo Tyasmoro Syamsul Arifin Udayana, Cicik Uma Khumairoh Yani Kurniawan, Yani