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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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The potential of invasive species Praxelis clematidea extract as a bioherbicide for Asystasia gangetica TRIMURTI HESTI WARDINI; INAS NUHA AFIFA; RIZKITA RACHMI ESYANTI; NOVI TRI ASTUTININGSIH; HIDAYAT PUJISISWANTO
Biodiversitas Journal of Biological Diversity Vol. 24 No. 9 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240914

Abstract

Abstract. Wardini TH, Afifa IN, Esyanti RR, Astutiningsih NT, Pujisiswanto AH. 2023. The potential of invasive species Praxelis clematidea extract as a bioherbicide for Asystasia gangetica. Biodiversitas 24: 4738-4746. The occurrence of weeds in agriculture directly impacts crop productivity, and the reliance on synthetic herbicides to solve the problem has raised concerns about the increasing environmental damage. Using bioherbicides to control weeds is necessary to reduce the negative impact of synthetic herbicides. Bioactive compounds derived from plants can be utilized to develop eco-friendly herbicides. Praxelis clematidea extract was reported to exhibit allelopathic activity against weeds. This study aims to evaluate the potential of P. clematidea extract as a bioherbicide to control seed germination and seedling growth of Asystasia gangetica weed. P. clematidea water extract was screened for its chemical compounds and determined its phytotoxic effects on Asystasia gangetica. The results showed that P. clematidea water extract contained phenolics, alkaloids, and terpenoids. P. clematidea extract suppressed seed germination, the time needed for seed germination, sprout length, number of leaves, biomass, and total chlorophyll contents. LC50values for the seed germination, seedling, root, and shoot growth were calculated at 9%, 25%, 11%,and 37% (v/v), respectively. Thus, P. clematidea could be used as an A. gangetica weed biocontrol agent and might be integrated into weed management programs.
Total phenolic and flavonoid contents and their antioxidant capacity of Curcuma xanthorrhiza accessions from Jambi RAYANDRA ASYHAR; MINARNI MINARNI; RINI ANGGI ARISTA; WARAS NURCHOLIS
Biodiversitas Journal of Biological Diversity Vol. 24 No. 9 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240944

Abstract

Abstract. Asyhar R, Minarni M, Arista RA, Nurcholis W. 2023. Total phenolic and flavonoid contents and their antioxidant capacity of Curcuma xanthorrhiza accessions from Jambi. Biodiversitas 24: 5007-5014. Curcuma xanthorrhiza Roxb., is an effective natural antioxidant and is widely used as a raw material for jamu in Indonesian traditional medicine. This study aims to evaluate the biochemical characteristics and antioxidant capacity of C. xanthorrhiza rhizome accessions. Ten accessions of C. xanthorrhiza rhizome from 10 districts in Jambi province were evaluated for total phenolic (TPC) and total flavonoid (TFC) content and antioxidant capacity using four methods: 2,2-diphenyl picrylhydrazyl (DPPH), 2,2 azinobis (3-ethyl benzothiazoline) -6-sulfonic acid (ABTS), ferric reducing antioxidant power (FRAP), and cupric reducing antioxidant power (CUPRAC). The content of total phenolic (TPC) and total flavonoids (TFC) varied from 1.74±0.085 to 18.72±1.47 mg GAE/g DW and 1.74±0.085 to 18.72±1.47 mg GAE/g DW, respectively. Antioxidant capacities ranged from 0.13-1.11, 0.72-4.14, 7.71-81.48, 18.37-211.68 µmol TE/g DW, assayed by DPPH, ABTS, FRAP, and CUPRAC methods, respectively. Antioxidant activity was significantly correlated with the polyphenol content of C. xanthorrhiza rhizome accessions. Accession to C. xanthorrhiza rhizome with the code JSS, JBE, JG, and JK has the capacity for polyphenolic compounds (phenolics and flavonoids) and antioxidant capacity compared to other accessions, indicating that these accessions are promising for further breeding programs and commercial purposes.
Distribution of Arbuscular Mycorrhiza Fungi (AM Fungi) in different plants within tailings deposition areas of Freeport Indonesia, Timika, Central Papua, Indonesia IRNANDA AIKO FIFI DJUUNA; NUNANG LAMAEK MAY; SITI HAJAR KUBANGUN; MARIA MASSORA; SOBA WILLEM AIBINI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 8 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240832

Abstract

Abstract. Djuuna IAF, May NL, Kubangun SH, Massora M, Aibini SW. 2023. Distribution of Arbuscular Mycorrhiza Fungi (AM Fungi) in different plants within tailings deposition areas of Freeport Indonesia, Timika, Central Papua, Indonesia. Biodiversitas 24: 4515-4522. This study investigated the presence of Arbuscular Mycorrhiza Fungi (AM Fungi) in various vegetation types within tailings deposition areas in Freeport Timika, Papua. Soil and root samples were collected from 41 sampling locations, representing 28 types of vegetation growing in these areas. AM Fungi spores were extracted using the wet sieving technique, while root samples were cleaned, stained, and analyzed for the percentage of root infection using the gridlines method. Some soil characteristics were also analyzed, including pH (H2O), moisture content, organic carbon (C), Total nitrogen (N) and phosphorus (P), and soil texture. The study showed low total soil N and P levels, with organic C ranging from low to high and a pH range from 6 to 6.7. The spore number ranged from 2 to 20 spores/10 g soil, and the percentage of root colonization varied from 17 to 89.5%. The highest number of spores (20 spores/10 g soil) was found in the rhizosphere of Homalanthus sp. and Polyalthia glauca, while the highest percentage of root colonization (89.5%) was observed under Pandanus sp. at Upper ADA. Notably, the highest number of spores did not correspond to the highest percentage of infected roots. Additionally, four genera of AM Fungi, namely Glomus, Acaulospora, Scuttelospora and Gigaspora, were found to thrive in tailings areas and have the potential to be developed as biofertilizers for tailings rehabilitation programs.
New records of the diversity of Scleroderma spp. from Papua, Indonesia SUPENI SUFAATI; SUHARNO SUHARNO; VERENA AGUSTINI; NUTTIKA SUWANNASAI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 8 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240808

Abstract

Abstract. Sufaati S, Suharno, Agustini V, Suwannasai N. 2023. New records of the diversity of Scleroderma spp. from Papua, Indonesia. Biodiversitas 24: 4269-4276. Papuan forest is one of the highest diversity tropical rainforests in the world. However, in some areas it is undergoing in process of land degradation. Reforestation using local plant inoculated with native mycorrhiza may have better results since they will be more adaptable. Mycorrhiza helps in plant nutrient uptake and ameliorates heavy metals in mining areas. Genus Scleroderma is a group of ectomycorrhiza that can be found at early stage of succession. However, to date there has been little study on its taxonomy. This study was conducted to construct the database on the diversity of Scleroderma spp. in Papua, Indonesia. Samples were collected from several areas in the provinces of Papua and West Papua from 2003 to 2022. Morphological characters and its habitat were observed. The results show, that 23 isolates had been documented. Molecular identification using ITS sequences was used to confirm the Scleroderma to the species level. The results found at least 3 species of Scleroderma, namely: Scleroderma suthepense, S. xanthochroum, and S. sinnamariense were identified based on morphological and molecular analysis, while S. citrinum was identified morphologically. This finding provides new data on the distribution of Sclerodermataceae in Papua. The results of this preliminary study are important for selecting native Scleroderma spp. for inoculation programs in degraded land.
Characterization of morphological, micromorphological, anatomical structures and matK gene-based identification of aromatic litsea (Litsea cubeba) ISMI NUR AINI; WISANTI WISANTI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 8 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240859

Abstract

Abstract. Aini IN, Wisanti. 2023. Characterization of morphological, micromorphological, anatomical structures and matK gene-based identification of aromatic litsea (Litsea cubeba). Biodiversitas 24: 4557-4567. Aromatic litsea or krangean (Litsea cubeba (Lour.) Persoon) has potential as a drug. L. cubeba's status based on the IUCN red list is the least concern. This research aimed to (i) characterize morphology, micromorphology, and anatomy; (ii) indetify L. cubeba species based on DNA barcodes. The research samples were collected in the Mt. Anjasmoro, East Java, Indonesia at three different altitudes. Data in the form of various characters were analyzed using the one-way ANOVA method to determine the significance of the difference. The statistical test analysis of the quantitative character of L. cubeba showed a significant difference between heights (? = 0.05). The results showed that the characterization of L. cubeba includes (i) morphology: structure of lenticels, color, and substance that coats the lower surface of leaves, type of flower, fruit taste, and aroma; (ii) micromorphology: glands lining the abaxial surface of the lamina, trichomes on both surfaces of the lamina, structure of abaxial epidermal cells, the shape of pollen, shape and distribution of exin (iii) anatomy: cuticle thickness, epidermal cell shape, and presence of secretory cells in the lamina. The molecular identification in the form of L. cubeba barcode DNA based on the matK gene marker matched the Litsea cubeba sequence in NCBI (AB259073.1).
The indigenous art of orchid noken making by the Mee Tribe in the highland of Central Mountains, Indonesian Papua YUBELINCE Y. RUNTUBOI; DINA ARUNG PADANG; MARIANA H. PEDAY; AGUSTINA Y. S. AROBAYA; ANTONI UNGIRWALU; AMILDA AURI; PETRUS A. DIMARA; CICILIA M.E. SUSANTI; NOVITA PANAMBE; NITHANEL M.H. BENU
Biodiversitas Journal of Biological Diversity Vol. 24 No. 7 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240727

Abstract

Abstract. Runtuboi YY, Padang DA, Peday MH, Arobaya AYS, Ungirwalu A, Auri A, Dimara PA, Susanti CME, Panambe N, Benu NMH. 2023. The indigenous art of orchid noken making by the Mee Tribe in the highland of Central Mountains, Indonesian Papua. Biodiversitas 24: 3881-3890. The eastern Indonesian Papua boasts remarkable biodiversity and valuable natural resources. Despite this, there has been a lack of scientific investigation into the sustainable utilization of these resources by the diverse ethnic groups residing in Papua. This paper discusses the traditional practice of the men of the Mee Tribe, who specialize in crafting a traditional bag called orchid noken. The study aims to document and preserve the local knowledge and expertise of the Mee Tribe regarding the use of plants in their craftwork. The field study was conducted in August 2014 in the village of Bomomani, located in the Dogiyai District of Papua Province. Qualitative methods, such as interviews and participatory observation, were employed to collect data from 18 key informants selected for their knowledge of the Mee Tribe's traditional practices of orchid noken making. The study uncovered that the Mee Tribe relies on nine species of wild plants, including orchids, ferns, and rattans, as the primary raw materials for crafting noken. Specific parts of these plants are carefully selected and incorporated into the crafting process, employing different processing techniques to achieve the desired colors and textures in the final product. The findings highlight the immense significance of the orchid noken in the daily lives of the Mee Tribe. This study demonstrates that noken is a product closely associated with the local knowledge and culture of the Mee Tribe. Additionally, by documenting and understanding the Mee Tribe's traditional practices, the research contributes to the conservation of plant diversity and the preservation of Papuan cultural heritage. This study ensures the continued transmission of traditional knowledge and practices to future generations, safeguarding the invaluable cultural heritage of Papuans.
Morphophysiological responses and tolerance of various sweet corn (Zea mays convar. saccharata) hybrids to shade stress VIRGIANA FITRI UTARI; MUHAMAD ACHMAD CHOZIN; DHIKA PRITA HAPSARI; ARYA WIDURA RITONGA
Biodiversitas Journal of Biological Diversity Vol. 24 No. 8 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240825

Abstract

Abstract. Utari VF, Chozin MA, Hapsari DP, Ritonga AW. 2023. Morphophysiological responses and tolerance of various sweet corn (Zea mays convar. saccharata) hybrids to shade stress. Biodiversitas 24: 4438-4447. Expanding lands for cultivating sweet corn (Zea mays convar. saccharata) is a strategy to increase its production. Yet, the available lands for sweet corn extensification might be those with existing tree stands with some extent of shading. Planting sweet corn under tree stands affects its growth and productivity since there is a reduction in light intensity, but some superior varieties might tolerate such stress. This study aimed to determine the growth, yield, and shade-tolerance levels of several sweet corn genotypes under shade stress. The experiment adopted a randomized complete block design consisting of two factors, namely shading (i.e. control or 0% shade and 50% shade) and sweet corn genotype (16 genotypes). The observed parameters included morphological traits (plant height, leaf number, leaf length, leaf width, and stem diameter), physiological traits (stomatal density and trichome density), yield attributes (cob weight with husks, cob weight without husks, cob length, cob diameter, and total soluble solid), and stress tolerance index (STI). The tested genotypes responded differently to shading. In general, 50% shade significantly reduced cob production, with an average decrease of more than 50% compared to the control. Commercial varieties, namely Exotic (G13), Talenta (G14), Paragon (G15), and Golden Boy (G16), had relatively higher STI values compared to the hybrids. Among the hybrids, the highest STI values were observed for genotypes resulting from the crosses SM7-8 × SM12-2 (G11) and SM11-6 × SM12-2 (G12). The results of this study recommend that commercial varieties can be cultivated under tree stands or low light intensity and can be used to develop high-yielding shade-tolerant sweet corn varieties.
Genetic variation and phylogenetic position of Taxus sumatrana (Miq.) de Laub. (Taxaceae) in Sumatra, Indonesia based on trnL-trnF region IRSYAD KAMAL; NAWWALL ARROFAHA; SUSILA SUSILA; KUSUMADEWI SRI YULITA; HENTI HENDALASTUTI RACHMAT; ARIDA SUSILOWATI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 9 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240960

Abstract

Abstract. Kamal I, Arrofaha N, Susila, Yulita KS, Rachmat HH, Susilowati A. 2023. Genetic variation and phylogenetic position of Taxus sumatrana (Miq.) de Laub. (Taxaceae) in Sumatra, Indonesia based on trnL-trnF region. Biodiversitas 24: 5155-5166. Taxus sumatrana (Miq.) de Laub. is a synonym of T. wallichiana Zucc. by some authors based on morphological characters and its distribution. This species is a medicinal plant and contains taxol as an anti-cancer with slow natural regeneration rate and increasing threats to their existence. This study aimed to determine the genetic diversity and the phylogenetic analysis using trnL-trnF for T. sumatrana growing in Sumatra, Indonesia. The total of 37 individuals from three natural populations of T. sumatrana were studied, consisting of the current new collection from Toba - North Sumatra and previously studied population of Dempo - South Sumatra and Sungai Penuh, Kerinci Seblat National Park - Jambi. The Toba population did not show variation at individual level within the population as similar results were obtained from the previous study. However, one indel (- and A) was found at 217 bp from all three T. sumatrana populations from Sumatra, Indonesia. When the sequences were aligned with the reference sequence from GenBank, single base substitutions were found at 344, 478,722, and 757 bp consisting of one indel and three single nucleotide polymorphisms (SNPs). Phylogeny tree showed that T. sumatrana from Sumatra population clustered together with T. mairei and T. wallichiana var. mairei and later combined with other T. sumatrana available in NCBI.
Genotype sensitivity and adaptability for fruit yield in red and green okra on environmental change SHAHRIZAL M. ABDILLAH; MUHAMAD SYUKUR; WILLY B. SUWARNO; ARYA W. RITONGA; ANUNG WAHYUDI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 8 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240810

Abstract

Abstract. Abdillah SM, Syukur M, Suwarno WB, Ritonga AW, Wahyudi A. 2023. Genotype sensitivity and adaptability for fruit yield in red and green okra on environmental change. Biodiversitas 24: 4289-4298. Okra is vegetable plant consumed in immature and beneficial plants of various health. For breeders, this crop had a big chance to develop a high-yield genotype in various conditions. To develop a new variety must be known adaptability and stability in environment tests. This research aimed to evaluate the fruit yield response, sensitivity, and adaptability of okra genotypes in four environment trials. A randomized complete block design with three replications was used in each environment, with ten okra genotypes as the treatment. The AMMI-1, AMMI-2 and GGE biplot was used to illustrate genotype stability and their adaptability. Genotype by environment interaction significantly affected fruit yield, with the environment having a large contribution, with SWR01 being the highest yield. The rate of rainfall and PC1 were explained as 36.98% and 70.17% to the GEI sum of squares, respectively. ‘ZAHIRA’ and ‘GSO03’ showed sensitivities to the rate of rainfall. Genotypes ‘SWR01’ and ‘GSO03’ were the most favorable genotype according to ASV and yield performance across environments The AMMI-1, AMMI-2 and GGE biplot confirmed that both were the most suitable genotype for developing a recent variety of okra in a wide environment.
Phytochemical analysis in conjunction with in vitro a-glucosidase inhibitory and antioxidant activities of three Diospyros species from East Kalimantan, Indonesia RICO RAMADHAN; NISA’UR ROSYIDAH; YAZDANIYAR FAJRI HALIMI FIRDAUS; IRMAYANTI TRI KURNIA; DINDA AYU LESTARI; KIETTIPUM PHONTREE; PREECHA PHUWAPRAISIRISAN; LUKMAN RIYADI; ARRIZAL RAHMAN; NURLITA ABDULGANI; SILVI ARUM MARETNA; KAYLA NAULIA FADHILA
Biodiversitas Journal of Biological Diversity Vol. 24 No. 9 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240919

Abstract

Abstract. Ramadhan R, Rosyidah N, Firdaus YFH, Kurnia IT, Lestari DA, Phontree K, Phuwapraisirisan P, Riyadi L, Rahman A, Abdulgani N, Maretna SA, Fadhila KN. 2023. Phytochemical analysis in conjunction with in vitro a-glucosidase inhibitory and antioxidant activities of three Diospyros species from East Kalimantan, Indonesia. Biodiversitas 24: 4783-4790. Locals who live in forested areas have long relied on Non-Timber Forest Products (NTFPs) for their traditional ceremonies, food, and medicine. As non-timber forest products, medicinal plants are of interest since they are used by locals in East Kalimantan regions, Indonesia, for local traditional medicine. In the search for new potential antidiabetics and antioxidants created from natural resources, the authors concentrated on medicinal plants traditionally used in East Kalimantan and ethnopharmacological data. The purpose of this study is to evaluate the dual roles of non-timber forest products, such as three Diospyros L. species, in a-glucosidase inhibition, antioxidant (free radical scavenging activity against DPPH and ABTS), and CUPRAC in-vitro activities. This study showed that the strongest a-glucosidase inhibitory activity was found in ethyl acetate and ethanol residue extracts of Diospyros celebica Bakh., with IC50 values of 4.5804±0.14 ug/mL and 3.8236±0.19 ug/mL respectively, which were more potent than quercetin as a positive standard. Additionally, the antioxidant test revealed that leaf extracts of three Diospyros species from East Kalimantan are excellent sources of natural antioxidants, as demonstrated by the SC50 values. The findings of this study support and validate the use of leaf extracts of three Diospyros species in traditional East Kalimantan medicine.

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