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INDONESIA
Journal of Tropical Biodiversity and Biotechnology
Published by Universitas Gadjah Mada
ISSN : 25409573     EISSN : 25409581     DOI : -
Core Subject : Science, Agriculture, Social,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Environmental Science Immunology & microbiology
Journal of Tropical Biodiversity and Biotechnology (JTBB) is an authoritative source of information concerned with the advancement of tropical biology studies in the Southeast Asia Region. It publishes original scientific work related to a diverse range of fields in tropical biodiversity, functional biology, and biotechnology.
Arjuna Subject : -
Articles 327 Documents
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The Complete Chloroplast Genome of Medinilla tapete-magicum (Melastomataceae) from Sulawesi, Indonesia Priyadi, Arief; Kuswandi, Paramita Cahyaningrum; Yulianti, Evy; Pratiwi, Risha Amilia; Asih, Ni Putu Sri
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.87932

Abstract

In this study, the genome of an endemic Sulawesi’s plant, Medinilla tapete-magicum was sequenced using Illumina NextSeq 500 and assembled the whole chloroplast genome. Results showed that the cpGenome is 155,602 bp in size with typical quadripartite structure of a large single copy (LSC) region (85,409 bp), a short single copy (SSC) region (16,629 bp), and a pair of inverted repeats (IRs) regions (26,782 bp). The cpGenome is composed of 132 genes, which consists of 87 protein coding genes, 37 tRNAs, and 8 rRNAs. The sliding window analyses showed that psbB-psbH and ndhF-rpl32 can potentially be used as markers. Microsatellite motifs of mononucleotide A and T dominated in the cpGenome. The phylogenetic trees from the concatenated 76 shared protein coding gene sequences showed the Medinilla clade was monophyletic and M. tapete-magicum is a sister species in the SE Asian clade which contain M. magnifica and M. speciosa. 
Mining GATA Transcription Factor Encoding Genes in The Cocoa Tree (Theobroma cacao L.) Suggests Their Potential Roles in Embryo Development and Biotic Stress Response Chu, Ngoc Thi Bich; Le, Thi Man; Chu, Ha Duc; Tran, Huyen Thi Thanh; Tran, Lan Thi Mai; La, Hong Viet; Vu, Quyen Thi Xuan; Phung, Huynh Huy; Cao, Phi Bang
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 3 (2024): September
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88015

Abstract

GATA transcription factors (TFs) are widely recognized as significant regulators, characterized by a DNA-binding domain that consists of a type IV zinc finger motif. This TF family has been widely investigated in numerous higher plant species. The purpose of the present work was to comprehensively analyze the GATA TF in cocoa plant (Theobroma cacao L.) by using various bioinformatics tools. As a result, a total of 24 members of the GATA TFs have been identified and annotated in the assembly of the cocoa plant. According to phylogenetic analysis, these TcGATA proteins were classified into four distinct groups, including groups I (10 members), II (seven members), III (five members), and IV (two members). Next, our investigation indicated that the TcGATA proteins in different groups exhibited a high variation in their physic-chemical features due to their different protein lengths, gene structures, and conserved motif distributions, whereas the TcGATA proteins in the same clade might share the common conserved motifs. Additionally, the gene duplication of the TcGATA genes in the cocoa plant was also investigated. Of our interest, the relative expression levels of the TcGATA genes were investigated according to available transcriptome databases. The results exhibited differential expression patterns of all TcGATA genes in various developmental stages of zygotic and somatic embryogenesis, indicating that these TcGATA genes divergently function during various developmental stages of the zygotic and somatic embryos. Moreover, TcGATA genes were differently expressed under Phytophthora megakarya treatment across different points of treatment and cocoa varieties. To sum up, our findings could provide a basis for a further deep understanding of the GATAs in the cocoa plant.  
Diversity and Phenetic Relationship of Mountain Papaya (Vasconcellea Pubescens) in Dieng Plateau Based on Morphological Marker Rifqi, Muhammad Said; Chasani, Abdul Razaq
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88061

Abstract

Vasconcellea pubescens A. DC., commonly referred to as mountain papaya, belongs to the Caricaceae family and is native to the Andean highlands.  In Indonesia, mountain papaya can be found on the Dieng Plateau and has become one of the typical processed products from the Dieng area. The aim of the study is to explore the diversity and phenetic relationship of mountain papaya from the Dieng Plateau based on morphological markers. This study is important to provide information in guiding future conservation efforts. 18 samples were collected from three areas with different altitudes in the Dieng Plateau. In addition, it proved valuable results by elucidating patterns of variation, enabling the identification of distinct groups. A total of 18 samples were collected from three areas with varying altitudes in the Dieng Plateau. Morphological analysis used 22 characters with The Clustering Analysis Method, Principal Component Analysis (PCA), and Diversity Analysis using Multivariate Statistical Package (MVSP) software version 3.1A. The results of cluster analysis showed that mountain papaya accessions were grouped into two main clusters and five sub-clusters. Cluster grouping based on sex distribution characters, flower stalk length, and inflorescence density; there is no grouping based on geographical location or altitude. The Shannon's Index Value (H') for mountain papaya shows moderate phenetic diversity. This suggests that the mountain papaya community remains stable within its substrate and its environmental parameters. 
Bioremediation of Mercury- Polluted Water in Free Water Surface-Constructed Wetland System by Euglena sp. and Echinodorus palifolius (Nees & Mart.) J.F. Macbr. Siswanti, Dwi Umi; Daryono, Budi Setiadi; Petrus, Himawan Tri Bayu Murti; Suyono, Eko Agus
Journal of Tropical Biodiversity and Biotechnology Vol 8, No 3 (2023): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88143

Abstract

Mercury accumulation in the aquatic environment can be highly harmful. The body takes mercury vapor through the lungs, then absorbs mercury metal through the digestive system, and then the blood carries the metal to the brain. Bioremediation is the process of breaking down or converting harmful compounds into non-toxic forms, which can be accomplished through phytoremediation or phycoremediation. The goal of this study was to examine the growth and anatomy of Euglena sp. after being cultured in the mercury-containing FWS-CW waste treatment system. The ability of Euglena sp. and Echinodorus palifolius to bioremediate mercury at different concentration as well as association and non-association treatments. This study was carried out in a bioreactor known as FSW-CW (Free Water Surface-Constructed Wetlands). Plant growth (plant height and number of leaves), chlorophyll content, diameter of root and petiole, metaxylem diameter of root, petiole, and leaves, cortical thickness of root and leaves, and petiole anatomy were all measured. Water temperature, pH, salinity, and light intensity were all measured as environmental parameters. Mercury treatment reduced Euglena density (183.5 cells. mL-1103 in control and 12.6 cells. mL-1103 in 100 ppm mercury treatment) and number of E. palifolius leaves, but not plant height and chlorophyll. Root and petiole diameters were affected by the mercury treatment, petiole diameter decreased unless the concentration was 100 ppm, whereas root diameter actually increased. The diameter of the root metaxylem increased, but the petioles and leaves, as well as the thickness of the root cortex, did not provide a significant response. The growth of E. palifolius was still optimal in the presence of Euglena in mercury-containing medium. 
Hesperitin Synergistically Promotes the Senescence Induction of Pentagamavunone-1 in Luminal Breast Cancer Cells, T47D Rifai, Fauziah Novita Putri; Hanifa, Mila; Zulfin, Ummi Maryam; Ikawati, Muthi; Meiyanto, Edy
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 1 (2024): March
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88238

Abstract

Pentagamavunone-1 (PGV-1), a curcumin analog, is a promising anticancer candidate for several cancers that have been proven in vitro and in vivo. However, the efficacy of PGV-1 against breast cancer is subject to improvement to achieve a more suitable application. Here we propose hesperitin, a citrus flavonoid, to increase the anticancer potency of PGV-1 in luminal breast cancer cells. We use the T47D cell as the model to investigate the effect of co-administration of PGV-1 and hesperitin on cell cycle block, apoptosis modulation, and senescence phenomena. PGV-1 and hesperitin showed strong and weak cytotoxicity with an IC50 value of 2 µM and 100 µM, respectively. The co-treatment of PGV-1 and hesperitin resulted in strong synergistic effects with combination index (CI) value of ≤ 0.2. This combination caused apoptosis in correlation with cell cycle disruption in G2/M phase at 48 h. In particular, PGV-1 and hesperitin combination increased the incidence of cellular senescence significantly higher than the single treatment. Despite its senescence potentiation, hesperitin did not induce senescence in normal cells. Taken together, hesperitin may increase the anticancer potency of PGV-1 by modulating cell cycle arrest and apoptosis via the senescence mechanism. 
Composition and Diversity of Dragonflies (Odonata) in Several Habitat Types in Lumajang Regency, East Java Province, Indonesia Susanto, Muhamad Azmi Dwi; Millah, Najmatul; Leksono, Amin Setyo; Gama, Zulfaidah Penata
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88469

Abstract

Lumajang is one of the regency in East Java Province that has various types of freshwater ecosystems and have great potential as habitats for various insects, especially dragonflies. Dragonflies are insects that mostly live aquatically, so their existence is highly dependent on the condition of aquatic ecosystems. This study aims to compare the composition and diversity of dragonfly species in various habitat types in Lumajang. The study was conducted in lentic and lotic ecosystems in Lumajang. The method used was the Visual Encounter Survey (VES) technique adapted from the sweeping net. The data analysis used to determine differences in dragonfly species composition was the Bray-Curtis similarity analysis, while diversity analysis was conducted using the Shannon-Wiener index. This study recorded 29 species from seven families, including seven endemic dragonfly species found only on several islands in Indonesia. In the analysis of the Shannon-Wiener diversity index, the results show that in all research locations have a value of H'= 1.07‒2.11, where the Rice Field habitat is the location with the highest value among other locations, with a value of H' = 2.11. The similarity analysis of dragonfly species composition using Bray Curtis similarity showed that it was divided into three groups. The composition of dragonflies found in several habitats in Lumajang is different, which can be influenced by many factors such as site elevation, habitat type (lentic or lotic), and habitat condition, as well as several other factors such as microclimate and vegetation (related to food availability). 
Ecological Study of Bidens pilosa in Bandung, West Java, Indonesia Oktaviant, Dimas Panji; Rosleine, Dian
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 3 (2024): September
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88675

Abstract

Bidens pilosa has been widely distributed from tropical to temperate regions and is often reported as a weed in agriculture. It readily thrives in various environments, naturally spreading to open areas and artificial ecosystems, establishing new populations, emphasising the need for ecological studies to prevent its invasive potential. In this study, we focused on population study of B. pilosa and its distribution in Bandung as urban area. Survey was conducted using 1x1 m quadrate plots in eight locations (24 plots). Individual number of B. pilosa, the number of flowers in each individual, coordinates, and altitude of each plot were recorded to describe population structure and map this population in Bandung. Air temperature (°C), humidity (%), light intensity (Lux), and soil water content (%) were measured. Individual number and environmental condition are analysed using cluster analysis and PCA, then mapped using IDW (Inverse Distance Weighting). The highest population in AR (652 ind), followed by CG (626 ind), TR (253 ind), PA (135 ind), CW (78 ind), NR (39 ind), PU (28 ind), and PR (20 ind). On average, each B. pilosa individual produces 61 inflorescences, indicating a mature population with all developmental stages present across all locations. Ordination plots shows that B. pilosa has wide range of environmental condition from open to shade area with various environmental condition. Open areas, settlements, and agriculture host dense B. pilosa populations, and its biological traits suggest it may become invasive without proper control. 
Microbial Count and AvBD10 Expressions in Ovaries and Oviducts of Kampung Unggul Balitbangtan (KUB)-1 Chickens Following Intravaginally CpG-ODN and S. Enteritidis Suryohastari, Raden Rara Bhintarti; Sumarsono, Sony Heru; Giri-rachman, Ernawati Arifin; Edi, Suryo Purnomo; Sukoco, Rinto; Wicaksana, Dwi Nawang
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88750

Abstract

Indonesia boasts diverse native chickens (Gallus gallus domesticus) known for more disease resistance in comparison to broiler chicken, and Kampung Unggul Balitbangtan (KUB)-1 is designated as Indonesia's superior breed. Salmonella Enteritidis (SE) is associated with salmonellosis, a foodborne illness that can be transmitted by transovarial, wherein colonisation in the oviduct ascends to the ovaries. However, studies mimicking transovarial salmonellosis via intravaginal treatment of chicken have been limited. Meanwhile, Cytosine-phosphate-guanine oligodeoxynucleotide (CpG-ODN) stimulation has been known to induce avian β-defensins (AvBDs). This in vivo study aimed to determine the effects of intravaginal CpG-ODN treatment and SE challenged on microbial count and AvBD10 expression regarding the potential of intravaginally CpG-ODN to enhance innate immunity as an alternative approach against transovarial Salmonellosis. A total of 39 KUB-1 chickens were divided into four groups: T1 (CpG-ODN treatment), T2 (SE treatment), T3 (CpG-ODN treatment + challenged with SE), and C (Control). Observation was carried out from day 1 to day 4 post-intravaginal (PI). We found a significant increase in ovarian microbial count (p≤0.05). Notably, ovaries and oviducts remained uncontaminated post-SE challenge. Intravaginal CpG-ODN treatment significantly upregulated AvBD10 in both ovaries (p=0.016) and oviducts (p=0.023). Therefore, KUB-1 chickens exhibit SE immunity, and intravaginal CpG-ODN administration holds promise for preventing transovarial Salmonellosis in laying hens. 
Fantastic Macrofungi in Poncokusumo District, Bromo Tengger Semeru National Park (TNBTS) Area and Their Habitat Characteristics Amelia, Aquinita Shinta Setya; Dewi, Rosita Fitrah; Setyawati, Heni; Hafazallah, Khalid; Putrie, Rahayu Fitriani Wangsa; Mubarok, Husni
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 3 (2024): September
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.88778

Abstract

Bromo Tengger Semeru National Park (TNBTS) is a conservation area in East Java with an abundance of biodiversity, including macrofungi. This study aims to identify the macrofungal species existing in Poncokusumo district, TNBTS area, and their habitat characteristics for a further sustainable study of fungi. This study used a purposive sampling method by opportunistic exploration. Identification of macrofungi is conducted by morphological analysis and habitat characterization. The study identified 15 macrofungal species categorized as Ascomycota and Basidiomycota, that were distinct in their habitat characteristics. The 15 macrofungal species inhabited leaf litter, wood litter, soil, and bamboo. 
Diversity of Orchid species in the Tilu Mountains Region of Indonesia and the Potential for Phytochemistry Prapitasari, Bela; Rezaldi, Taufiq; Kenza, Masfufah Lutvita; Aliwafa, Ahmad; Gunawan, Dwi Ariya; Nuraini, Latifa
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 3 (2024): September
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.89174

Abstract

Orchids are one of the largest and globally distributed plant families. Indonesia has the most types of orchids, estimated around 20% from the total species across the world. Mainly orchids used as an ornamental plant. This research aimed to elucidate another potential of orchids as possibly for herbal medicine plant. The potential of orchids as herbal medicine has been known for a long time, but there is lack of well-documented research. The research method used in this research is exploration on predetermined research sites that were conducted in Mount Tilu, West Java on 2022. Observation data of orchids were collected on the sites and the analysis was carried out in a qualitative descriptive approach by describing the data from the research results and comparisons were made through a literature review. Based on the research results, we found about 31 species from 28 genera consisting of 24 epiphytic orchids and 7 terrestrial orchids in the Mount Tilu Kuningan area, West Java. There are 4 endemic species categorised in Java; Chilochista javanica, Crepidium koordesii, Crepidium junghuhnii, and Taeniophyllum biocellatum.

Page 30 of 33 | Total Record : 327

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