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Menara Perkebunan
Published by Pusat Penelitian Kelapa Sawit
ISSN : 01259318     EISSN : 18583768     DOI : -
Core Subject : Agriculture,
Agriculture, Biological Sciences & Forestry
Menara Perkebunan as a communication medium for research in estate crops published articles covering original research result on the pre- and post-harvest biotechnology of estate crops. The contents of the articles should be directed for solving the problems of production and/or processing of estate crops of smallholder, private plantations and state-owned estates, based on the three dedications of plantation. Analyses of innovative research methods and techniques in biotechnology, which are important for advancing agricultural research. Critical scientific reviews of research result in agricultural and estate biotechnology.
Arjuna Subject : -
Articles 541 Documents
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Morphological variations during the development of somatic embryos of tea (Camellia sinensis L.) in vitro Keragaman morfologi selama perkembangan embrio somatik teh (Camellia sinensis L.) in vitro . SUMARYONO; Imron RIYADI; J.S. TAHARDI
Menara Perkebunan Vol. 69 No. 2: 69 (2), 2001
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v69i2.167

Abstract

SummarySomatic embryo culture of tea (Camelliasinensis L.) on an agar-solidified medium consistsof embryos of different sizes, colors anddevelopmental stages. One gram of mostly globularsomatic embryos were cultured on a solidproliferation medium of WP containing 57.1 µMIAA and 4.4 µM BAP to observe theirmorphological variations with respect to embryosize, color, and developmental stage over oneculture passage of 6 weeks. Fresh weight ofsomatic embryos increased slowly during the first4 weeks and then sharply thereafter. At the fourthweek, the number of embryos increasedconsiderably although their weight did not increase,indicating the formation of secondary embryos.The average size of tea somatic embryos did notchange significantly over the culture period,however, the embryo size was already highly variedat the start and increased as the embryo developed.About one half of the embryos were yellowish and the rest were divided equally between the greenishand reddish embryos. At the initial culture, 60% ofthe embryos were at the globular, 30% at heart and10% at torpedo stage. Generally, globular embryosdeveloped into later-stage embryos as the cultureprogressed, however, on this proliferation mediumalmost 80% of the embryos remained at the globularand heart-shaped stages even after the sixth week.If single globular somatic embryos with a particularcolor were cultured on a solid regeneration mediumof WP with 0.47 µM kinetin, 0.69 µM ABA and0.29 µM GA 3 , some of them especially theyellowish embryos underwent color change. Mostof these single globular embryos developedgradually into the later stages. While the initialcolors of embryos affected the rate ofdevelopmental stage changes, yellowish globularembryos tended to develop more rapidly intocotyledonary or germinant stages than the greenishand reddish embryos.RingkasanBiak embrio somatik tanaman teh (Camelliasinensis L.) pada medium padat terdiri dari embriodalam berbagai ukuran, warna dan stadiaperkembangan. Satu gram embrio somatik yangsebagian besar dalam stadia globuler telahdibiakkan pada medium padat proliferasi (mediumWP dengan IAA 57,1 µM dan BAP 4,4 µM) untukmengamati keragaman morfologi embrio dalam halukuran, warna dan stadia perkembangan dalamsatu periode kultur 6 minggu. Berat basah embriosomatik meningkat perlahan pada 4 minggupertama kemudian meningkat dengan tajam. Padaminggu keempat, jumlah embrio melonjakwalaupun beratnya tidak meningkat, hal inimenunjukkan adanya pembentukan embriosekunder. Ukuran rata-rata embrio somatik tidakberubah secara nyata selama periode kultur, tetapiukuran embrio sudah sangat beragam sejak awalkultur dan terus meningkat sejalan denganberkembangnya embrio. Sekitar setengah dariembrio berwarna kuning dan sisanya terdiri dariembrio berwarna hijau dan merah. Pada awalkultur, 60% embrio berada pada stadia globuler,30% stadia bentuk-hati dan 10% stadia bentuk-torpedo. Pada umumnya embrio globulerberkembang ke stadia lebih lanjut sejalan denganwaktu, tetapi pada medium proliferasi ini hampir80% embrio masih dalam stadia globuler danbentuk-hati pada minggu keenam. Apabila embriosomatik globuler tunggal dengan warna tertentudibiakkan pada medium padat regenerasi(WP dengan kinetin 0,47 µM, ABA 0,69 µM danGA 3 0,29 µM, sebagian embrio terutama embriokuning akan mengalami perubahan warna.Sebagian besar embrio globuler tunggal iniberkembang secara bertahap kestadia per-kembangan lebih lanjut. Warna awal embrioberpengaruh terhadap kecepatan perubahan stadiaperkembangan embrio, dengan embrio globulerawal warna kuning cenderung lebih cepatberkembang kestadia kotiledon dan kecambahdibandingkan dengan embrio hijau dan merah. 
Analisis abnormalitas tanaman kelapa sawit (Elaeis guineensis Jacq) hasil kultur jaringan dengan teknik Random Amplified Polymorphic DNA (RAPD) Analysis abnormalities of oil palm (Elaeis guineensis Jacq) from tissue culture by Random Amplified Polymorphic DNA (RAPD Nurita TORUAN-MATHIUS; Saro Ina Ita BANGUN; . MARIA-BINTANG
Menara Perkebunan Vol. 69 No. 2: 69 (2), 2001
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v69i2.169

Abstract

SummaryProblem in oil palm propagation throughtissue culture is the abnormality of reproductiveorgans i.e. female flowers and mantle fruits are inthe same plants or clones. Various abnormalitiesobtained between clones, and could only beidentified after fruit formation. The experimentwas conducted to analyze genetic similarities ofnormal and abnormal genotypes in the same andamong clones, and also to get a specific RAPDband as a marker for abnormalities. Six clones ofoil palm (16 genotypes) of 5-year old MK152,MK203, MK209 and MK212 with normal fruits,female flowers, and abnormal fruits (heavymantled), grown in the field, while two otherclones were MK 104 and MK 176 with normalfruits and heavy mantled. PCR reaction toamplify DNA of 16 genotypes using 15 randomprimers. Genetic similarities and dendogramwere done by NTSYS-pc, while honestly value ofUPGMA analyzed by boostrap with WinBootprogram. The results showed that OPC-07,OPC-09, OPW-19 and SC10-19 were able todetermine the differences of normal andabnormal genotypes in the same clone of sixclones tested. While other primers were onlyable to differentiate between normal andabnormal genotypes only in several clones.Genetic similarities among 16 genotypes testedwere around 0.47-0.96. Genetic similaritiesbetween normal genotype were higher than thatof among abnormal genotypes. MK176 clonewas more stable in culture as compare to otherclones. UPGMA showed that in generaly normalgenotypes and abnormal one, in the sameclones belongs to the same group. The results ofprincipalcomponent analysis showed that from 15primers tested no specific DNA band could beused as a marker for abnormalities. To obtainehave DNA markers, a more sensitive techniquefor DNA analysis is needed.RingkasanMasalah yang dihadapi dalam perbanyakantanaman kelapa sawit dengan teknik kulturjaringan adalah abnormalitas organ reproduktifyaitu terbentuknya bunga jantan dan buah manteldalam klon yang sama. Terjadinya abnormalitassangat beragam, dan teridentifikasi setelahtanaman berbuah. Penelitian ini bertujuan untukmengetahui kesamaan genetik serta penge-lompokan antar genotipe normal dan abnormaldalam klon yang sama maupun antar klon, sertamenetapkan pita DNA penciri untuk abnormalitasdengan RAPD. Enam klon kelapa sawit(16 genotipe) berumur 5 tahun yaitu MK152,MK203, MK209, dan MK212 masing-masingdengan genotipe berbuah normal, berbungajantan, dan berbuah abnormal (mantel berat). Duaklon lainnya yaitu MK104 dan MK176 masing-masing terdiri dari genotipe berbuah normal danmantel berat. Reaksi PCR untuk mengamplifikasiDNA contoh dilakukan menggunakan 15 primeracak. Kesamaan genetik dan pembuatanfenogram dilakukan dengan programNTSYS-pc. Sedang tingkat kepercayaanUPGMA ditetapkan dengan analisisbootstrap menggunakan program WinBoot.Hasil yang diperoleh menunjukkan bahwaprimer OPC-09, SC10-19, OPC-07 danOPW-19 mampu membedakan genotipenormal dan abnormal dalam klon yang samauntuk keenam kon yang diuji. Sedang primerlainnya hanya mampu menunjukkanperbedaan antar genotipe normal danabnormal dalam beberapa klon saja.Kesamaan genetik antar 16 genotipe yangdiuji berkisar antara 0,47-0,96. Kesamaangenetik antar genotipe normal lebih tinggidibandingkan dengan kesamaan genetikantar genotipe abnormal. Klon MK176lebih stabil dalam kultur dibandingkandengan klon lainnya. UPGMA menunjukkanbahwa umumnya genotipe normal danabnormal dalam klon yang sama beradadalam satu grup. Hasil analisis komponenutama menunjukkan bahwa dari 15 primeryang diuji belum mampu menghasilkan pitaDNA penciri untuk abnormalitas. Untukmendapatkan pita DNA penciri, perludilakukan analisis DNA dengan teknik yanglebih sensitif untuk mendeteksi perubahansatu basa oligonukleotida 
Pengembangan pelacak DNA spesifik gen melalui bioinformatika: Indentifikasi gen penyandi protein biji 21 kDa pada kakao UAH Indonesia The development of gene-specific probe by bioinformatica: Identification of 21 kDa-encoding seed protein gene on Indonesian UAH cacao D. SANTOSO SANTOSO
Menara Perkebunan Vol. 69 No. 1: 69 (1), 2001
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v69i1.174

Abstract

SummaryA proper gene-specific probe is inevitablefor the process of gene discovery. In additionsuch probe can be utilized to study the expressionof corresponding gene. Probe, which is specificto gene of interest maybe developed usinginternet-accessible database coupled withmolecular techniques. This research aimed todevelop a probe, specific to 21 kDa-encodingseed protein gene and try it on cacao genomes.Two pairs of DNA primers were made based onthe conserved regions. Examined on the cacaogenomes with PCR technique demonstrated thatboth the specific and nested primer pairs wereable to amplify the targeted gene fragments withpredicted sizes, about 465 and 160 bp. RT-PCRwith total RNA from cacao seeds suggested thatthe specific primer can be utilized to determinethe expression level of the gene in the organ.Furthermore, Southern blotting analysis withgenomic DNA from five different cacao clones inIndonesia indicated that the probe wassignificantly specific to the gene. These concludethat a probe specific to the 21 kDa-encoding genewas developed and tested effective to identify thepresence and determine the expression of thegene.RingkasanProses penemuan gen memerlukan adanyapelacak spesifik gen tersebut. Selain itu, pelacakspesifik juga dapat digunakan dalam mempelajariekspresi suatu gen yang sesuai. Pelacak spesifikgen dapat dikembangkan dengan memanfaatkankemajuan bioinformatika teknik-teknik biologimolekuler. Penelitian ini bertujuan untukmerintis pengembangan pelacak spesifik gen danmengujinya pada genom kakao. Adapuntargetnya adalah gen penyandi protein 21 kDayang diekspresikan di biji kakao namun bukanmerupakan protein penyimpanan (storageprotein). Dua pasang primer DNA dihasilkan dariperancangan menggunakan dasar daerahterkonservasi. Pengujian di tingkat genom kakaodengan teknik PCR membuktikan bahwa keduapasangan primer tersebut dapat mengamplifikasisecara spesifik gen penyandi protein target. BaikPCR dengan pasangan primer spesifik genmaupun nested, terhadap dua klon kakao, masing-masing menghasilkan dua amplikon yangukurannya sesuai dengan ukuran prediksi, yaitusekitar 465 dan 160 pb-an. Pengujian dengan RT-PCR menunjukkan bahwa pelacak tersebut dapatdigunakan untuk menentukan ekspresi gentersebut dibiji kakao. Lebih dari itu, Southernblotting terhadap genom dari lima klon kakaoyang berbeda menegaskan bahwa pelacak gentersebut memiliki spesifisitas yang tinggi. Dengandemikian pelacak spesifik gen penyandi proteinbiji 21 kDa dapat dikembangkan dan terbuktiefektif untuk beberapa klon kakao di Indonesia.
Optimization media from low-cost nutrient sources for growing Spirulina platensis and carotenoid production Optimasi media dengan sumber nutrisi murah untuk pertumbuhan dan produksi karotenoid Spirulina platensis . TRI-PANJI; . SUHARYANTO
Menara Perkebunan Vol. 69 No. 1: 69 (1), 2001
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v69i1.175

Abstract

SummarySpirulina platensis is a cyanobacteriaproducing several bioactive compounds such ascarotenoids which are economically valuable. Toproduce carotenoids in S. platensis biomassefficiently, it is necessary to define an optimummedium composition consisting of mineral saltand organic complex derived from low-costnutrient sources. Spirulina platensis grown oncomplex media containing latex serum fromconcentrated latex factory, supplemented withsalt minerals might produce high yieldingcarotenoids. The objective of this research is todefine media composition for optimum growthand carotenoid production of S. platensis and toidentify carotenoid compounds from biomass ofthe algae. S. platensis was grown on mediacontaining latex serum from latex concentratefactory (5%, v/v), macroelements andmicroelements, for 10 weeks at a room aeratedand illuminated by 20 W TL lamp at 50 cmdistance. Microelements were formulatedat a certain amount to give eleven combinationsof C: N: P: Mg. The Aiba & Ogawa syntheticmedium was used as a reference medium. Theoptimum growth of S. platensis had reachedafter eight-week incubation. Among elevenmedia composition containing latex serumexamined, best growth on a formulated mediumwith a ratio of C: N: P: Mg = 1:3:0.3:0.2 yielding0.350 g biomass/L This amount was slightlylesser than those on synthetic Aiba & Ogawamedium that yields 0.407 g biomass/L, aftereight-week incubation. Although the biomassproduction was lower than that of synthetic Aiba & Ogawa medium, the formulated mediagave higher carotenoid content. The highestcarotenoid content in biomass was 2.866 mg/kgbiomass obtained from a medium with ratio ofC: N: P: Mg = 1: 2: 0.3: 0. Thin layerchromatography (TLC) analysis of biomassextract showed the presence of two-six carotenoidcompounds, in which one of them is β- carotene.RingkasanSpirulina platensis adalah sianobakteria yangmenghasilkan berbagai senyawa bioaktif bernilaiekonomi tinggi antara lain karotenoida. Untukmemproduksi karotenoida dari biomassa selS. platensis secara efisien, perlu ditetapkankomposisi media mineral dan bahan organikkompleks yang optimal dari sumber nutrisi yangmurah. Spirulina platensis yang ditumbuhkandalam media serum lateks dari pabrik latekspekat dengan suplemen garam-garam mineraltertentu diharapkan produktif dalammenghasilkan karotenoida. Tujuan penelitianadalah menetapkan komposisi media yangoptimal untuk pertumbuhan dan produksikarotenoid serta mengidentifikasi jenis senyawakarotenoid dalam biomassa sel S. platensis.Sianobakteria ini ditumbuhkan dalam mediakompleks mengandung serum lateks pekat(5%, v/v) dengan suplemen nutrisi berupamakronutrien dan mikronutrien selama10 minggu di dalam ruangan dengan aerasi danpenyinaran lampu TL 20 W pada jarak 50 cm.Komposisi makronutrien diformulasi untukmemberikan sebelas macam variasi nisbahC:N:P:Mg. Sebagai pembanding digunakanmedia sintetik Aiba & Ogawa. Hasil penelitianmenunjukkan bahwa pertumbuhan S. platensismencapai puncak setelah diinkubasikan selamadelapan minggu. Dari 11 komposisi mediamengandung lateks yang diuji, pertumbuhanS. platensis terbaik adalah yang ditumbuhkandalam media formula dengan nisbah C:N:P:Mg=1:3:0.3:0.2 menghasilkan 0,350 g biomassa/L,sedikit lebih rendah dibandingkan denganmenggunakan media sintetik Aiba & Ogawa yangmenghasilkan 0,407 g biomassa/L selama8 minggu. Walaupun kandungan biomassanyalebih rendah, media formula tersebut meng-hasilkan karotenoid lebih tinggi dibandingkandengan media sintetik Aiba & Ogawa.Kandungan karotenoid tertinggi pada biomassayaitu sebesar 2.866 mg/kg diperoleh pada mediadengan nisbah C:N:P:Mg=1:2:0.3:0. Analisisekstrak biomassa dengan TLC menunjukkanadanya dua-enam jenis karotenoida, salahsatunya adalah β - karotena.
Identification of p5cs gene on sugarcane by PCR using heterologous primer Identifikasi gen p5cs tebu dengan PCR menggunakan penanda heterologous H. MINARSIH MINARSIH; D. SANTOSO SANTOSO; N. FITRANTY FITRANTY
Menara Perkebunan Vol. 69 No. 1: 69 (1), 2001
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v69i1.176

Abstract

SummaryAn attempt toward increasing the sugarproduction by using marginal land requiressugarcane (Saccharum officinarum L.) cultivarswhich tolerant to drought or osmotic stress.Development of such plant through modernbiotechnology needs a gene carrying droughttolerance and the pertinent molecular information.When the gene is indigenous property, theplanting materials developed will be morevaluable. This report describes research resultfrom identification the presence of p5cs(pyrroline-5-carboxylate synthetase) gene insugarcane and limited molecular characteristicsrelated to an attempt to develop sugarcanetolerant to water stress. Identification of the genein sugarcane was conducted by PCR usingspecific primers. The homology to other specieswas qualitatively predicted with hybridizationusing heterologous probe of Vigna aconitifolia.Proline contents were examined on the stress-treated and untreated plants as well, to estimateproline accumulated by the induction. Theamplified DNA fragment demonstrated that thesugarcane possesses p5cs with at least two highlyconserved regions as the others reported. Thesame sizes of amplified DNA fragment suggestedthat the position of the conserved regions in thetested and reported species is very similar. Noamplification using primers of non-conservedregions indicates that the p5cs gene of sugarcanewas not fully homologous to the gene of theothers. Higher content of proline in the stress-treated plants implies that the p5cs gene wasinducible.RingkasanUsaha peningkatan produktivitas guladengan pemanfaatan lahan kering, memerlukantersedianya bibit tanaman tebu (Saccharumofficinarum L.) unggul yang toleran terhadapcekaman kekeringan. Perakitan tanaman tersebutmelalui bioteknologi modern memerlukanketersediaan gen pembawa sifat ketahanankekeringan yang sesuai dan informasimolekulernya. Penelitian ini bertujuan untukmengidentifikasi adanya gen p5cs (pyrroline-5-carboxylate synthetase) pada tanaman tebu dankarakteristik molekulernya secara terbatas dalamperspektif usaha perakitan tanaman tebu tahankekeringan. Identifikasi gen pembawa sifatketahanan tersebut pada tanaman tebu dilakukandengan teknik PCR menggunakan primer spesifik.Tingkat homologinya terhadap gen dari spesieslainnya, secara kualitatif diprediksi dengan teknikhibridisasi menggunakan pelacak heterologusyang berasal dari gen p5cs tanaman V.aconitifolia. Kandungan prolin tanaman yangmendapat perlakuan cekaman kekeringan secarain vitro, ditetapkan untuk melihat seberapa tinggiakumulasi prolin dapat terjadi oleh induksiekspresi gen endogenous. Adanya fragmen DNAhasil amplifikasi dengan primer spesifik p5CS,membuktikan bahwa pada tanaman tebu terdapatgen p5cs yang pada daerah terkonservasimemiliki tingkat homologi yang tinggi.Diperolehnya ukuran yang sama dengan controlplasmid pBI-p5cs membuktikan bahwasebagaimana spesies tanaman lainnya, posisidaerah tersebut pada tebu adalah tertentu dansama. Tidak terjadinya amplifikasi dengan primerdari daerah di luar daerah terkonservasi,menunjukkan bahwa gen p5cs tebu tidaksepenuhnya homologous dengan yang berasaldari tanaman V. aconitifolia. Terjadinyapeningkatan akumulasi prolin pada perlakuancekaman kekeringan mengindikasikan bahwa genp5cs tersebut juga dapat diinduksi (inducible)oleh stress air.
Produksi dan karakterisasi lakase Omphalina sp. Production and characterization of Omphalina sp. laccase . SISWANTO; . SUHARYANTO; Rossy FITRIA
Menara Perkebunan Vol. 75 No. 2: 75 (2), 2007
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v75i2.177

Abstract

SummaryOmphalina sp. a white-rot fungi (WRF)originated from oil palm plantation has abilityto degrade empty fruit bunches of oil palm(EFBOP) so that it is expected to producelaccase with high activity. The ability ofOmphalina sp. to produce laccase enzyme onliquid fermentation will be studied. The enzymewill also be partially purified andcharacterized. The research result showed thatthe highest enzyme activity (1.162 U/mL) wasobtained using glucose malt yeast (GMY)medium at room temperature for four days.The addition of 2,5-xylidine as an inducerproduced laccase earlier i.e two days, but theactivity of laccase was less active afterprolonged incubation compared to that ofcontrol. The laccase produced on mediumcontaining 2% EFBOP reached optimumactivity as much as 0.38 U/mL after 10 th daysof incubation. Partial purification of laccaseon Sephacryl S-200 HR column resulted58.23% of yield recovery with twice purity thanbefore. The optimum pH of laccase was 4.5.Laccase activity was stable even after heatedon 50 o C for 30 minutes, but then decreasedwhen heated until 60 o C. The laccase has K Mand V max as much as 0.15 mM and 0.56 U/mLrespectively.RingkasanOmphalina sp., adalah fungi pelapuk putih(FPP) hasil isolasi dari kebun kelapa sawityang diketahui mampu mendegradasi tandankosong kelapa sawit (TKKS) dengan cepatsehingga diharapkan mampu menghasilkanlakase dengan aktivitas tinggi. KemampuanOmphalina sp. menghasilkan enzim lakasepada fermentasi cair akan dipelajari. Selain itu,lakase yang dihasilkan akan dimurnikan secaraparsial serta dilakukan karakterisasi pH, suhu,dan konsentrasi substrat optimum. Hasilpenelitian menunjukkan bahwa Omphalina sp.menghasilkan lakase dengan aktivitas tertinggi(1,162 U/mL) pada medium glucose malt yeast(GMY) yang diinkubasikan pada suhu ruangselama empat hari. Penambahan 2,5-xilidinsebagai induser mempercepat produksi lakaselebih awal yaitu dalam waktu dua hari, namunaktivitasnya masih lebih rendah dibandingkandengan kontrol pada inkubasi lebih lanjut.Lakase dari Omphalina sp. juga dapatdiproduksi pada medium yang mengandung2% TKKS dan aktivitasnya mencapai0,38 U/mL yang diinkubasi dalam suhu ruangselama 10 hari. Pemurnian parsial pada kolomSephacryl S-200 HR menghasilkan rendemensebesar 58,23% dengan kemurnian dua kalinya.Aktivitas lakase optimum pada pH 4,5 dantetap stabil setelah pemanasan selama 30 menitpada suhu ruang hingga 50 o C dan menuruntajam pada suhu 60 o C. Lakase Omphalina sp.menghasilkan nilai K M dan V maks masing-masing sebesar 0,15 mM dan 0,56 U/mL.
Kemiripan genetik klon karet (Hevea brasiliensis Muell. Arg.) berdasarkan metode Amplified Fragment Length Polymorphisms (AFLP) Genetic similarity of rubber clones (Hevea brasiliensis Muell. Arg) based on Amplified Fragment Length Polymorphisms (AFLP) method . NURHAIMI-HARIS; Hajrial ASWIDINNOOR ASWIDINNOOR; Nurita TORUAN-MATHIUS; Agus PURWANTARA
Menara Perkebunan Vol. 71 No. 1: 71 (1), 2003
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v71i1.180

Abstract

Summary   Genetic similarity among ten rubber clones originating from the Wickham collection was studied by Amplified Fragment Length Polymorphism (AFLP) markers.  These clones have different levels of resistance to Corynespora cassiicola, one of the major pathogens in rubber plantations.  The information resulted from this study will be used to determine resistant and susceptible clones which will be used in expression study of the genes encoding plant resistance to C. cassiicola.  Genetic similarity values of clones were calculated from all AFLP markers and used to produce a dendrogram using Unweight Pair-Group Method Arithmetic (UPGMA) based on Numerical Taxonomy and Multivariate System (NTSYS) version  1.8 pc.  A total of 481 fragments were detected by using ten pairs of selective AFLP primers, and 233 fragments (48,4 %) of them were polymorphic.  The results clearly demonstrated that genetic background of these ten clones were 85.5% similar.  At 88.0% similarity level, the clones could be divided into three clusters.  Genetic similarity of IRR 100 (resistant clone) with RRIC 103, PPN 2444 and IAN 873 (susceptible clones) was 90.5, 89.5 and 89.0% respectively, while genetic similarity of other three resistant clones (AVROS 2037, PR 255 and BPM 1) to those susceptible clones was 88.0%.  The lowest genetic similarity (85.5%) was found between RRIC 100 (resistant clone) and those three susceptible clones. By considering the distribution and the source of clones, AVROS 2037 (resistant) and PPN 2444 (susceptible) clones which have 88.0% genetic similarity  will finally  be selected for the expression study of the genes.  Kemiripan genetik sepuluh klon karet yang berasal dari koleksi Wickham dipelajari dengan menggunakan marka Amplified Fragment Length Polymorphism (AFLP).  Kesepuluh klon tersebut memiliki tingkat resistensi berbeda terhadap Corynespora cassiicola, salah satu cendawan patogen penting pada daun tanaman karet. Informasi yang diperoleh dalam penelitian ini akan digunakan untuk menetapkan klon resisten dan klon rentan untuk digunakan dalam mempelajari ekspresi gen yang menyandikan ketahanan tanaman karet terhadap C. cassiicola.  Nilai kemiripan genetik kesepuluh klon karet dihitung berdasarkan semua marka AFLP yang diperoleh dan selanjutnya digunakan untuk. membuat dendrogram dengan menggunakan Unweight Pair-Group Method Arithmetic (UPGMA) berdasarkan Numerical Taxonomy and Multivariate System (NTSYS) version 1.8 pc.  Dengan menggunakan 10 pasang primer AFLP selektif diperoleh sebanyak 481 fragmen DNA, S 2037, PR 255 and BPM 1) to those susceptible clones was 88.0%.  The lowest genetic similarity (85.5%) was found between RRIC 100 (resistant clone) and those three susceptible clones. By considering the distribution and the source of clones, AVROS 2037 (resistant) and PPN 2444 (susceptible) clones which have 88.0% genetic similarity  will finally  be selected for the expression study of the genes. 233 fragmen (48,4 %) di antaranya polimorfik    Dendrogram  dengan nyata menunjukkan bahwa 85,5% latar belakang genetik kesepuluh klon karet tersebut adalah sama, dan pada tingkat 88,0% kesepuluh klon terpisah dalam tiga kelompok.  Kemiripan genetik klon IRR 100 (resisten) dengan klon rentan RRIC 103, PPN 2444 dan IAN 873 masing-masing adalah 90,5, 89,5 dan 89,0%,  sedangkan kemiripan genetik tiga klon resisten lainnya (AVROS 2037, PR 255 dan BPM 1) dengan ketiga klon rentan yang sama adalah 88,0%.  Kemiripan genetik terendah (85,5%) terdapat antara klon RRIC 100 (resisten) dengan ketiga klon rentan tersebut.  Dengan mempertimbangkan distribusi penyebaran klon dan asal klon maka klon resisten AVROS 2037 dan klon rentan PPN 2444 yang memiliki kemiripan genetik 88,0% akan dipilih untuk digunakan dalam studi ekspresi gen tanaman karet. acerun:yes'>  Kesepuluh klon tersebut memiliki tingkat resistensi berbeda terhadap Corynespora cassiicola, salah satu cendawan patogen penting pada daun tanaman karet. Informasi yang diperoleh dalam penelitian ini akan digunakan untuk menetapkan klon resisten dan klon rentan untuk digunakan dalam mempelajari ekspresi gen yang menyandikan ketahanan tanaman karet terhadap C. cassiicola.  Nilai kemiripan genetik kesepuluh klon karet dihitung berdasarkan semua marka AFLP yang diperoleh dan selanjutnya digunakan untuk. membuat dendrogram dengan menggunakan Unweight Pair-Group Method Arithmetic (UPGMA) berdasarkan Numerical Taxonomy and Multivariate System(NTSYS) version 1.8 pc.  Dengan menggunakan 10 pasang primer AFLP selektif diperoleh sebanyak 481 fragmen DNA, S 2037, PR 255 and BPM 1) to those susceptible clones was 88.0%.  The lowest genetic similarity (85.5%) was found between RRIC 100 (resistant clone) and those three susceptible clones. By considering the distribution and the source of clones, AVROS 2037 (resistant) and PPN 2444 (susceptible) clones which have 88.0% genetic similarity  will finally  be selected for the expression study of the genes.   
Keefektifan Agrobacterium mentransfer gen P5CS ke dalam kalus tebu klon PS 851 Effectiveness of Agrobacterium to transfer P5CS gene into sugarcane callus PS 851 clone Niyyah FITRANTY; F NURILMALA; Djoko SANTOSO; Hayati MINARSIH
Menara Perkebunan Vol. 71 No. 1: 71 (1), 2003
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v71i1.181

Abstract

Summary Transformation of a P5CS gene construct into plant cells coupled with regeneration for transgenic plantlets should develop sugarcane tolerant to drought stress. The purpose of the research is to increase the effectiveness and efficiency of Agrobacterium transferring the gene into sugarcane callus. In this method, recombinant plasmid of pBI-P5CS could be transferred into host cells of Agrobacterium LBA4404 through triparental mating with pRK2013 helper. The parameters were tested to increase the effectiveness and efficiency of Agrobacterium  transferring the gene into sugarcane callus were the addition of antioxidant and 1.0% glucose, callus age (2, 3, and   4 weeks), medium pH (4.5; 5.0; and 5.6), treated with air dry for 30 minutes, wetting agent of silwet with and without short vacuum treatment, and acetosyringone consentration (100, 500, and 1000 mg/L). Identification of the transgene in sugarcane  was conducted by PCR using spesific primers, and the expression was tested by measuring  of the proline content. The result showed that addition of acetosyringone 100 ppm or more, P5CS transfer into the sugarcane explants by Agrobacterium was effective. The genetic transformation could be optimized by selecting proper age of calli, which was four weeks after sub-culture. The effectiveness could be maintained and slightly improved by inoculation at pH  4.5, addition 1.0% glucose, wetting agent of silwet with short vacuum treatment, or treated with air drying for 30 minutes. In vitro cultures for transgenic regeneration required addition of antioxidant to prevent browning in the culture media. The amplified DNA fragment demonstrated that the gene was transferred into sugarcane plantlets, and P5CS gene expression showed  increasing  proline content in transgenic sugarcane plantlets.Ringkasan Transformasi transgen P5CS yang diikuti dengan regenerasi tanaman transgeniknya diper-kirakan mampu menghasilkan tanaman tebu transgenik yang toleran terhadap cekaman kekeringan. Penelitian ini bertujuan untuk me-ningkatkan efektivitas dan efisiensi Agro-bacterium mentransfer gen P5CS ke dalam kalus tebu. Dalam metode ini, plasmid rekombinan pBI-P5CS berhasil dengan baik ditransformasi-kan ke dalam sel. Agrobacterium   LBA4404   dengan  pendekatan triparental mating meng-gunakan helper pRK2013. Parameter yang diuji untuk meningkatkan kondisi efektif dan efisien dalam transfer gen P5CSke dalam kalus tebu adalah penambahan antioksidan dan glukosa 1,0%, umur kalus (2, 3, dan 4 minggu), pH medium (4,5; 5,0; dan 5,6), pengeringan kalus   30 menit, bahan pembasah silwet tanpa dan dengan pemakuman, dan konsentrasi aseto-siringon (100, 500, dan 1000 mg/L). Pengujian keberadaan transgen P5CS dilakukan dengan PCR menggunakan primer spesifik, sedangkan ekspresinya diuji dengan mengukur kandungan prolin dari tanaman tebu. Hasil percobaan menunjukkan bahwa dengan penambahan asetosiringon 100 ppm atau lebih, penggunaan Agrobacterium terbukti efektif dan efisien dalam transfer konstruk transgen P5CS ke dalam eksplan kalus tebu. Transformasi dapat dioptimalkan dengan memilih eksplan kalus tebu yang baik, yaitu yang umur subkulturnya empat minggu. Efektivitasnya juga dapat dijaga atau sedikit ditingkatkan dengan inokulasi pH 4,5, penambahan glukosa 1,0%, bahan pembasah silwet dengan pemakuman, ataupun pemberian perlakuan pengeringan udara selama 30 menit. Kultur kalus transgenik memerlukan penambahan antioksidan untuk mencegah terjadinya pen-cokelatan. Adanya fragmen DNA hasil amplifikasi dengan primer spesifik P5CS menunjukkan pada tanaman tebu telah terdapat gen P5CS.  Demikian pula dengan ekspresi gen P5CS, menunjukkan adanya peningkatan kandungan prolin pada tanaman tebu transgenik. 
Arsitektur akar bibit kelapa sawit yang diinokulasi beberapa cendawan mikoriza arbuskula Root architecture of oil palm seedling inoculated with selected arbuscular mycorrhizal fungi Happy WIDIASTUTI; Edi GUHARDJA; Nampiah SUKARNO; Latifah KOSIM DARUSMAN; Didiek Hadjar GOENADI; Sally SMITH
Menara Perkebunan Vol. 71 No. 1: 71 (1), 2003
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v71i1.182

Abstract

Summary Oil palm is mostly cultivated in acid soil. The growth constraint of plant in acid soil is the limited availability of phosphorus (P) nutrient. Improvement of root system morphology and architecture have an important aspect since P is immobilized nutrient. Colonization of oil palm by rrbuscular mycorrhizal fungi increase the P uptake of plant. However, there is no information related to the effect of AM fungal colonization on oil palm root morphology and architecture.        A research has been conducted to asses the effect of colonization of two species of AM fungi on root system morphology and architecture of oil palm seedling. The research was conducted using Cikopomayak acid soil as medium in simple glass chamber. The plant material was from Indonesian Oil Palm Research Institute, Medan while AM fungal inoculum was produced using pot culture. Six treatments assesed are combination of three levels of  AM fungi inoculation (without inoculation with, Acaulospora tuberculata and Gigaspora margarita) and two levels of  fertilization (without, and with fertilizer). The result showed that colonization of AM fungi could change the root system morphology, and root architecture. The root fresh weight, root dry weight, length, and volume were significantly higher with the AM fungi colonization especially A. tuberculata inoculation. However, specific root weight was not significantly different between inoculated and uninoculated. The enhancement was significantly observed 26 weeks after inoculation. Biside that, proportion of secondary root of oil palm inoculated with AM fungi was higher compared to primary root. Fertilization tend to reduced root growth. Fertilization reduced significantly root shoot ratio of inoculated as well as uninoculated seedlings. The rooting volume was higher in inoculated seedling compared to uninoculated. The highest enhancement of N, P, and K uptake was observed 26 weeks after inoculation. The better root morphology and architecture might be one mechanisms of AM fungi colonized oil palm seedlings in increasing P uptake. Ringkasan Umumnya tanaman kelapa sawit ditanam pada tanah masam. Hambatan pertumbuhan tanaman pada tanah masam adalah terbatasnya ketersediaan nutrisi P (fosforus). Oleh sebab itu perbaikan sistem morfologi dan arsitektur akar memiliki aspek yang penting disebabkan P merupakan nutrisi yang tidak mudah bergerak. Kolonisasi tanaman kelapa sawit dengan cendawan  mikoriza arbuskula (CMA) akan meningkatkan penyerapan P oleh tanaman.  Namun, hubungan antara simbiosis  CMA dengan arsitektur perakaran kelapa sawit belum diketahui. Penelitian ini dilakukan untuk mempelajari pengaruh kolonisasi dua spesies CMA pada sistem morfologi dan arsitektur akar bibit tanaman kelapa sawit. Percobaan  dilakukan menggunakan tanah masam Cikopomayak yang mengandung Al tinggi sebagai medium dalam kultur pot kaca yang sederhana. Kecambah kelapa sawit berasal dari Pusat Penelitian Kelapa Sawit (PPKS), Medan,  sedangkan inokulum CMA diproduksi menggunakan kultur pot. Enam perlakuan yang diuji merupakan kombinasi tiga jenis inokulasi CMA ( tanpa inokulasi, inokulasi dengan Acaulospora tuberculata dan Gigaspora margarita) serta dua tingkat pemupukan (tanpa, dan dengan pemupukan). Hasil yang diperoleh menunjukkan bahwa inokulasi CMA merubah sistem morfologi dan arsitektur perakaran. Bobot basah, bobot kering, panjang dan volume akar nyata lebih tinggi pada tanaman yang dikolonisasi CMA khususnya A. tuberculata. Namun berat akar spesifik tidak beda nyata antara yang diinokulasi dan tanpa inokulasi. Peningkatan berat akar sangat nyata setelah 26 hari diinokulasi. Di samping itu proporsi akar sekunder lebih tinggi dibandingkan dengan akar primer pada  tanaman kelapa sawit yang diinokulasi CMA. Pemupukan pada umumnya menurunkan pertumbuhan akar dan secara nyata menurunkan nisbah akar pucuk. Volume perakaran lebih besar pada bibit kelapa sawit yang diinokulasi dibandingkan dengan yang tidak diinokulasi.  Peningkatan serapan  N, P,  dan  K tertinggi teramati 26 minggu setelah inokulasi. Morfologi perakaran yang lebih baik demikian pula arsitektur perakaran mungkin merupakan mekanisme bibit kelapa sawit bermikoriza dalam meningkatkan serapan P.
Establishment of Hevea brasiliensis lines overexpressing genes involved in ethylene signalling pathway Retno LESTARI; Maryannick RIO; Florence MARTIN; Julie LECLERCQ; Florence DESSAILLY; . SUHARSONO; Pascal MONTORO
Menara Perkebunan Vol. 84 No. 1 (2016): 84 (1), 2016
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v84i1.190

Abstract

The gaseous plant hormone ethylene has a wide variety of applications in agriculture and horticulture. Ethylene Response Factors (ERF) are the last transcription factors of the ethylene signalling pathway and control a large number of ethylene-responsive genes. Two Hevea brasiliensis ERF, HbERF-IXc4 and HbERF-IXc5, are orthologs to ERF1 a key regulator at the crosstalk of ethylene and jasmonate signalling pathways. These genes were suggested to play an important role in regulating latex cell metabolism in response to tapping and ethephon stimulation. In this study, transgenic lines overexpressing HbERF-IXc4 and HbERF-IXc5 under control of 35S CaMV and HEV2.1 promoter have been conducted. Transgenic Hevea lines were obtained by Agrobacterium tumefaciens-mediated genetic transformation. The somatic embryogenesis process was affected by these modifications. Agrobacterium tumefaciens genetic transformation procedure has been developed from friable callus line for clone PB260. Hevea callus was sub-cultured as small aggregates on paromomycin selection medium. Transgenic callus lines were established from sub-aggregates showing full GFP activity. Ten transgenic lines were confirmed as transgenic by Southern blot hybridization. This result showed successfully establishment of H. brasiliensis transgenic lines. Further plant regeneration and characterization were necessary to understand the function HbERF-IXc4 and HbERF-IXc5 in latex.

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