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Menara Perkebunan

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Published by Pusat Penelitian Kelapa Sawit

ISSN : 01259318 EISSN : 18583768 DOI : -

Core Subject : Agriculture,

Agriculture, Biological Sciences & Forestry

Menara Perkebunan as a communication medium for research in estate crops published articles covering original research result on the pre- and post-harvest biotechnology of estate crops. The contents of the articles should be directed for solving the problems of production and/or processing of estate crops of smallholder, private plantations and state-owned estates, based on the three dedications of plantation. Analyses of innovative research methods and techniques in biotechnology, which are important for advancing agricultural research. Critical scientific reviews of research result in agricultural and estate biotechnology.

Arjuna Subject : -

Articles 541 Documents

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Isolasi dan kloning fragmen cDNA dari tanaman karet dengan sifat resisten dan rentan terhadap Corynespora cassiicola menggunakan metode cDNA-AFLP Isolation and cloning of cDNA fragments from rubber plant with resistant and susceptible characters to Corynespora cassiicola using cDNA-AFLP method . NURHAIMI-HARIS; Antonius SUWANTO; Maggy T SUHARTONO; Hajrial ASWIDINNOOR
E-Journal Menara Perkebunan Vol 78, No 1: Juni 2010
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

AbstractLeaf fall disease caused by Corynespora cassiicola fungi is one of the most important diseases in rubber plant. Rubber clone AVROS 2037 is considered resistant to this pathogen while clone PPN 2444 is susceptible. These two rubberclones were used to identify genes or transcripts differentially expressed during interaction between rubber plants and the fungi, using cDNA-Amplified Fragment Length Polymorphism (cDNA-AFLP) method. Induced genes/transcripts expression was examined to compare differencies between plants uninfected and infected with C. cassiicola at 24, 36, 48 and 72 hours after inoculation. cDNA-AFLP analysis was performed using restriction enzyme VspI and TaqI so the adapters and primers also have the recognition site of these enzymes. By using 29 specific primers, 35 out of approximately 1450 fragments were differentially expressed between AVROS and PPN 2444 clones. All of these fragments were cloned and sequenced. The homology-based grouping of these sequences resulted in 19 contigs and nine individual sequences. Among these, 10 contigs and five sequences have significant sequence homology with known genes in gene bank data base, such as Ran binding protein, protein transporter and transcriptional regulators of some organisms; arginase, GTP-binding protein, heat shock protein (HSP) and aconitase. Ran binding protein, GTPbinding protein and protein transporter were known as membrane proteins while arginase and HSP usually expressed as a response to wounding or toxin treatment. The present of arginase is usually related to the availability of nitric oxide (NO) in plant tissue. NO is well known as a signal molecule on plant defense response. AbstrakPenyakit gugur daun yang disebabkan oleh fungi Corynespora cassiicola merupakan salah satu penyakit penting tanaman karet. Klon karet AVROS 2037menunjukkan sifat resisten terhadap patogen tersebut sedangkan klon PPN 2444 merupakan klon yang rentan. Kedua klon karet tersebut digunakan untuk mengidentifikasi gen atau transkrip yang diekspresikan secara diferensial selama terjadi interaksi antara tanaman karet dengan C. cassiicola menggunakan teknik cDNA-Amplified Fragment Length Polymorphism (cDNA-AFLP). Ekspresi gen/transkrip dipelajari untuk membandingkan perbedaan antara tanaman yang tidak diinfeksi dengan yang diinfeksi patogen pada waktu 24, 36, 48 dan 72 jam setelah inokulasi. Analisis cDNA-AFLP dilaksanakan dengan menggunakan pasangan enzim restriksi VspI dan TaqI sehingga adapter dan primer memiliki sekuen pengenalan kedua enzim restriksi tersebut. Dengan menggunakan 29 pasang primer spesifik, sebanyak 35 dari sekitar 1450 fragmen memiliki ekspresi berbeda antara klon AVROS 2037 dan PPN 2444. Semua fragmen yang berbeda tersebut kemudian diklon pada vektor kloning dan disekuen. Hasil sekuensing dikelompokkan berdasarkan homologi sekuennya dan menghasilkan 19 contigs serta sembilan macam sekuen yang tidak mengelompok. Sebanyak 10 dari 19 contigs dan lima dari sembilan sekuen tersebut memiliki homologi dengan produk gen yang telah dikenal yang terdapat di pangkalan data GenBank, seperti putative Ran binding protein, protein transporter, regulator transkripsi, arginase, GTP-binding protein, heat shock protein (HSP) dan aconitase. Beberapa di antaranya seperti putative Ran binding protein, protein transporter dan GTP-binding protein dikenal sebagai protein membran, sedangkan arginase dan HSP merupakan protein atau enzim yang ekspresinya pada tanaman antara lain dipengaruhi oleh adanya pelukaan dan perlakuan toksin. Keberadaan arginase sering berhubungan dengan ketersediaan nitric oxide (NO) pada jaringan tanaman. NO dikenal sebagai salah satu sinyal molekul dalam mekanisme pertahanan tanaman.

Analisis genotip normal dan abnormal pada klon kelapa sawit (Elaeis guineensis Jacq.) dengan Amplified Fragment Length Polymorphism (AFLP) Analysis normal and abnormal genotypes of oil palm clones (Elaeis guineensis Jacq.) by Amplified Fragment Length Polymorphism (AFLP) Nurita TORUAN-MATHIUS; . ENDANG-YUNIASTUTI; Ridwan SETIAMIHARJA; Murdaningsih H. KARMANA
E-Journal Menara Perkebunan Vol 73, No 1: Juni 2005
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

SummaryTissue culture-derived plants of oil palmmay develop abnormal flowers in whichprimordial stamens are converted into carpel-liketissue or mantled fruits, and sterile male flowers.This abnormality can be heritable, individualpalm may show variation in mantling andreversion to the normal phenotype over time hasbeen observed. The aim of these experiments wasto analyze the differences between normal andabnormal genotypes by DNA-AFLP. DNA wasisolated from young fruits of three clones,MK152, MK209, and MK 212 each of themconsisted of normal fruits, abnormal fruits andsterile male flowers. The research consisted of (i)selection of AFLP primer which can producepolymorphic bands, (ii) genetic similaritiesanalysis, UPGMA, principal component analysisand specific DNA bands between normal orabnormal genotypes. For primers selection, 20AFLP primers with DNA from MK 152 normaland abnormal genotypes were used. The selectedprimers were then used to amplify DNA of ninegenotypes. The results show that 10 primer com-binations EcoRI/MseI produced polymorphicbands. Each primer from 10 primer producedonly one or two DNA bands indicates that thedifferences between normal and abnormalgenotypes in the same clone. However, nopolymorphism was consistently found betweennormal and abnormal clones in all the sets.Genetic similarity analysis shows that betweengenotype had high genetic similarities, around92-99%. The results of UPGMA found thedifferent clustering between normal fruit,abnormal male and abnormal fruits. The resultsshow same as clustering based on first, secondand third component. This suggest that, whilstAFLP method is an effective way of detectingvariation in tissue culture-derived plants,different approaches are required to identify thecasual basis of the mantled fruit abnormality.RingkasanTanaman kelapa sawit yang dihasilkan darikultur jaringan, umumnya dalam perkembangan-nya akan memiliki organ reproduktif yangabnormal. Abnormalitas berupa primordialstamen berkembang menjadi bentuk jaringanseperti karpel, buah mantel, atau bunga jantanmandul. Penelitian ini bertujuan untukmendapatkan pembeda DNA-AFLP antaragenotip normal dan abnormal pada klon-klonkelapa sawit. DNA diisolasi dari buah muda klonMK 152, MK 209, dan MK 212 yang masing-masing terdiri atas genotip normal, berbuahabnormal, dan berbunga jantan steril. Percobaanmencakup (i) seleksi primer AFLP yang mampumenghasilkan pita yang polimorfis, (ii) analisiskemiripan genetik, UPGMA, komponen utamadan pita pembeda antar genotip normal danabnormal. Seleksi primer dilakukan terhadap 20primer AFLP menggunakan DNA dari genotipMK 152 yang normal dan abnormal. Selanjutnyaprimer terpilih digunakan untuk mengamplifikasiDNA dari kesembilan genotip yang diuji. Hasilyang diperoleh menunjukkan bahwa 10 kombi-nasi primer EcoRI/MseI mampu menghasilkanpita yang polimorfis. Dari 10 primer yang diuji,masing-masing hanya menghasilkan satu ataudua pita DNA yang mampu membedakan genotipnormal dan abnormal dalam klon yang sama.Namun, tidak ada pita DNA spesifik yangmampu membedakan genotip normal denganabnormal untuk seluruh klon yang diuji. Analisiskemiripan genetik menunjukkan bahwa antargenotip memiliki kemiripan genetik yang sangattinggi, yaitu 92-99%. Dari hasil UPGMAdiperoleh pengelompokan yang terpisah antargenotip normal, abnormal jantan dan buahabnormal. Hasil tersebut didukung olehpengelompokan berdasarkan komponen utamasatu, dua dan tiga. Dapat disimpulkan bahwa,teknik AFLP tidak efektif untuk mendeteksipembeda antar genotip tanaman yang diperolehdari kultur jaringan, pendekatan lainnyadiperlukan untuk mengidentifikasi abnormalitas.

Pengaruh cendawan mikoriza arbuskula (CMA) terhadap karakteristik agronomi tanaman tebu sistem tanam bagal satu The influence of arbuscular mycorrhizal fungi(AMF) on agronomic characteristics of single bud planting sugarcane . BASUKI
E-Journal Menara Perkebunan Vol 81, No 2: Desember 2013
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

AbstractSingle bud planting system is a propagation system togenerate high quality seed cane from sugarcane cuttings inthe form of single bud. A glasshouse experiment wasconducted to study the effect of arbuscular mycorrhizalfungi (AMF) application on agronomic parameters insugarcane seedlings propagated through single budplanting system. AMF inoculum used was Glomus sp. andGigaspora sp. with 4-6 spores per g, given as much as 5 gper pot, while growth media was a mixed of soil withorganic mater (1:1). The seedling was planted in plastic potof 5x5x9 cm 3 (lxwlxh) in size. The treatment assessed waswith and without AMF. Each of the treatment replicated 10times potrai and each potrai contain 63 holes. Theobservation was carried out after four weeks incubation andthe parameters observed were seedling height, wide of leaf,biomass of root and rooting percentage, nutrient content oftissue and AMF infection. The data was analyzed withanalyses of variance. The result showed that AMFinoculation could enhance seedling height 48,41%, and leafwide 22,2% compared to control. Seedling colonized withAMF produced of root fresh weight two times highercompared to these uninoculated seeds. The high of watercontent of root of seedling colonized with AMF showedthat the higher ability of the seedling to absorb water (48%)compared to those uncolonized seedling. The colonizedseedling hopefully could survived in dry condition.AbstrakSingle bud planting merupakan salah satu sistemuntuk mendapatkan bibit tebu berkualitas dari batang tebubentuk stek satu mata. Penelitian ini bertujuan mengetahuipengaruh aplikasi cendawan mikoriza arbuskula (CMA)terhadap parameter agronomi bibit tebu yang diperbanyakmelalui sistem single bud planting (SBP). Penelitiandilakukan di rumah kaca menggunakan bahan tanam berupabibit bagal satu (SBP) yang telah berumur tujuh hari.Inokulum CMA yang digunakan adalah Glomus sp. danGigaspora sp. dengan populasi 4-6 spora/g sebanyak 5 g perpot, sedangkan media tanam berupa tanah dan bahanorganik dengan perbandingan 1:1. Tanaman ditanam dipotrai berukuran p x l x t = 5 x 5 x 9 cm 3 . Perlakuan yangdiuji adalah inokulasi dengan dan tanpa CMA. Setiap per- lakuan diulang sebanyak 10 ulangan potrai dan tiap potraiterdiri dari 63 lubang, sehingga total tanaman tiap per-lakuan adalah 630 tanaman. Pengamatan dilakukan setelahinkubasi empat minggu dan parameter yang diamati adalahtinggi tanaman, lebar daun, kondisi dan bobot basah dankering perakaran, kandungan hara N, P, dan K jaringantanaman, dan infeksi CMA. Data diolah menggunakananalisis sidik ragam (Anova) dan diuji beda nyata dengan ujiT dengan taraf nyata 5%. Hasil penelitian menunjukkan,bahwa penggunaan cendawan mikoriza arbuskula (CMA)mampu meningkatkan tinggi tanaman sebesar 48,41 %, danlebar daun 22,2 % dibandingkan dengan kontrol. Tanamantebu yang dikolonisasi CMA memiliki bobot basah akar duakali lebih tinggi dibandingkan dengan yang tidak dikolo-nisasi CMA. Lebih tingginya bobot basah akar bibit tebubermikoriza menunjukkan lebih banyaknya tanaman me-nyimpan air yaitu sebesar 48%, dibandingkan dengan tanpaCMA sehingga diharapkan tanaman dapat bertahan padakondisi kering.

Deteksi dan analisis sekuen gen inhibitor proteinase pada beberapa klon kakao harapan tahan penggerek buah kakao dari Sulawesi Selatan Detection and sequence analysis of proteinase inhibitor gene in cacao clones putatively cacao pod borer-tolerant from South Sulawesi Abdul Mollah S. JAYA; Hajrial ASWIDINNOOR; Djoko SANTOSO
E-Journal Menara Perkebunan Vol 72, No 1: Juni 2004
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Summary Cacao is socially and economically an important commodity for Indonesia, in which the cacao plantations have been challenged with a threatening pest, cacao pod borer (CPB). This research aimed to identify and clone PIN (proteinase inhibitor), a gene carrying resistance of plant to some chewing pests like CPB. The methodology included several experiments. Detection of PIN in cacao was done by PCR using PIN-specific heterologous primers and cacao genomic DNA as templates. Cloning vector pGEM-T was utilized to clone the PCR products. Sequence analysis was conducted with BlastX and Blast Special programs from NCBI. Alignment analysis to determine genetic similarity was performed with ClustalW from EBI. Thirteen of the 18 clones tested were detected to have PIN homologs. Two DNA fragments from cacao clones putatively tolerant to CPB, MJ-1 and LW-1, were sequenced. One of them, MJ-1 was cloned. Sequence analyses of the fragments of both cacao clones, indicated that they have PIN homologs and a very closed genetic relation with 96% level of similarity. Ringkasan Kakao adalah komoditas yang secara sosial maupun ekonomi penting bagi Indonesia, dimana perkebunan kakao menghadapi masalah serius hamapenggerek buah kakao (PBK). Penelitian ini bertujuan mengidentifikasi dan mengklon PIN (inhibitor proteinase), gen yang membawa sifat ketahanan tanaman terhadap hama ulat seperti PBK. Metodologinya terdiri dari beberapa percobaan. Deteksi PIN di dalam kakao dikerjakan dengan PCR menggunakan primer heterologous yang spesifik terhadap PIN dan DNA genomik kakao sebagai templetnya. Vektor kloning pGEM-T digunakan untuk mengklon produk PCR. Analisis sekuen dilakukan dengan program BlastX dan Blast spesial dari NCBI. Analisis penjajaran (alignment) untuk menentukan kemiripan genetik menggunakan program ClustalW dari EBI. Tiga belas dari 18 klon kakao yang diuji menunjukkan adanya homolog PIN. Dua DNA fragmen dari klon harapan tahan, MJ-1 dan LW-1, telah ditentukan sekuen nukleotidanya. Satu diantara-nya, MJ-1 berhasil diklon. Analisis sekuen kedua klon tersebut menunjukkan identitas sebagai homolog PIN dan keduanya memiliki kemiripan genetik yang tinggi.

Teknik sambung mikro in vitro kina Cinchona succirubra dengan C. ledgeriana In vitro micrografting technique of Chincona succirubra and C. ledgeriana Nurita TORUAN-MATHIUS; . LUKMAN; . AGUS-PURWITO
E-Journal Menara Perkebunan Vol 74, No 2: Desember 2006
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Summary In vitro micrografting is a technique for grafting scions to rootstocks of plantlets from tissue culture. In vitro micrografting of Cinchona plant has never been carried out. The objective of this research was to obtain the best method of in vitro micrografting, medium for micrografted plantlets, and acclimatization for Cinchona plantlets from micrografting. The research consisted of (i) optimization of micrografting method, (ii) optimization of medium for growing plantlets, and (iii) acclimatization of micrografted plantlet. Plantlets of four-month-old of C. ledgeriana QRC clone were used as scions, while of C. succirubra as rootstocks. Each of experiments was arranged according to Completely Randomized Design, consisted of combination of scion and rootstock and type of micro-grafting with 10 replicates. Parameters measured were the percentage of survived plantlet, leaf number, and callus productions on union area, and percentage of survived plantlet. The results show that V type of micrografting was the best for Cinchona micrografting. MS medium with the addition of 3 mg/L IBA was the best medium for growing of micrografted plantlet. Husk charcoal mixed with top soil (1 : 1) was the best medium for acclimatization. Acclimatization consisted of two steps: preaclimatization in a culture room with 12- hour photoperiod at temperature 25 – 27oC for two weeks, followed by aclimatization in a plastic house with 70% reduced light intensity for one month. Using this method, 90% of the seedlings were survived. It is concluded that in vitro micrografting can be used as a technique for clonal propagation of Cinchona sp.Ringkasan Teknik sambung mikro (mikrografting) in vitro adalah teknik penyambungan potongan batang atas pada batang bawah dalam kultur jaringan. Pada tanaman kina teknik sambung mikro in vitro belum pernah dilakukan. Tujuan penelitian ini adalah menetapkan tipe sambung mikro, medium terbaik untuk planlet hasil sambung mikro, dan perbanyakan tanaman kina dengan sambung mikro. Pelaksanaan percobaan meliputi (i) optimasi tipe sambung, (ii) optimasi medium, dan (iii) aklimatisasi planlet hasil sambung mikro. Bahan tanaman yang digunakan sebagai batang atas adalah planlet Cinchona ledgeriana klon QRC, sedangkan sebagai batang bawah digunakan planlet C. succirubra, berumur empat bulan. Masing- masing percobaan disusun dengan Rancangan Acak Lengkap terdiri dari dua taraf yaitu kombinasi batang bawah dengan batang atas bentuk sambung tipe V dan L dilakukan dengan 10 ulangan. Peubah yang diukur meliputi persentase planlet yang bertahan hidup, jumlah daun, berkalus atau tidak berkalus pada daerah pertautan, dan persentase planlet yang bertahan hidup. Hasil yang diperoleh menunjukkan bahwa tipe V merupakan cara sambung mikro yang terbaik. Medium MS dengan penambahan 3 mg/L IBA adalah medium terbaik untuk pertumbuhan dan perakaran planlet hasil sambung mikro. Aklimatisasi planlet dilakukan dengan medium tumbuh arang sekam : top soil (1 : 1) yang disterilkan. Tahapan aklimatisasi adalah pre-aklimatisasi dalam ruang kultur suhu 25 - 27 oCdengan pencahayaan 12 jam per hari dan diikuti dengan aklimatisasi di rumah plastik bernaungan 70% paranet. Dengan metode aklimatisasi ini 90% dari bibit mampu bertahan hidup. Kesimpulan dari penelitian ini menunjukkan bahwa teknik sambung mikro dapat digunakan untuk perbanyakan klonal Cinchona sp..

Pengaruh jumlah subkultur dan media sub-optimal terhadap pertumbuhan dan kemampuan regenerasi kalus tebu (Saccharum officinarum L.) (Effect of repeated subculture and suboptimum media on the growth of sugarcane calli (Saccharum officinarum L.)) Hayati MINARSIH; . Suharyo; Imron RIYADI; Diah RATNADEWI
E-Journal Menara Perkebunan Vol 84, No 1: Oktober 2016
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Sugarcane (Saccharum officinarum L.) is an important crop for sugar production. One attempt to increase sugarcane productivity is through micropropagation and quality improvement of sugarcane seedlings in vitro. This research aimed to study the effect of repeated subcultures on callus capacity for regeneration and plant survival in acclimatization phase, as well as the influence of suboptimum media on the recovery capability of sugarcane callus to proliferate in vitro. Fourth subcultured sugarcane callus derived from young leaves were used as material in this research. Basic medium of Murashige and Skoog (MS) added with 3 mg/L 2,4-D, 10% coconut water, and 3% sucrose was used for callus initiation. For callus regeneration, the MS medium was supplemented with 2 mg/L BAP, 0.2 mg/L IAA, 10% coconut water, and 3% sucrose. Study on the effect of subculture numbers consisted of three stages, i.e. initiation, regeneration, and acclimatization, while the study on resting phase or the use of sub-optimal media included six treatment media and two pathways. Results showed that the fifth subcultures produced embryoid callus (91%), the highest non mucilaginous callus (97%), and the highest abnormality rate (6%). Results from the suboptimum media treatment, showed that B pathway (4 week resting phase) was better than the A pathway (8 week resting phase), based on fresh weight and callus abnormality percentage. A and B pathways indicated that the growth of callus can be recovered when it was grown back to the normal media and 1.5D-MS treatment of the resting phase showed the best growth and appearance.

Pengaruh ventilasi terhadap morfologi, stomata dan kadar klorofil tunas karet yang diperbanyak melalui microcutting Influence of ventilation on morphology, stomata and chlorophyll content of Hevea shoots propagated through microcutting . NURHAIMI-HARIS; Nurul Siti AYUNINGTIAS; Irma Herawati SUPARTO
E-Journal Menara Perkebunan Vol 79, No 2: Desember 2011
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

AbstractIn plant tissue culture, the culture vessels are usuallycovered tightly with screw caps, aluminium foils, parafilm,or plastic wrap. This condition restricts the exchange ofgases in culture vessels and will affect negatively thegrowth of explants. The use of ventilated closure improvesthe air quality in culture vessels. Microboxes provided withdifferent types of filter (yellow filter with Kv value13.09 Gas Exchange (GE)/day, green filter with Kv value81.35 GE/day and without filter) on their closure wereexamined as culture vessels for growing rubber explants atmultiplication step. The purpose of this research was toobserve the plant condition in different types of microboxcorresponding to the morphology, stomata and chlorophyllcontent of the shoots. The results showed no significantdifference of shoot height on each microbox. The use ofventilated closure increased significantly new leafformation and decreased leaf fall. Normal size and color ofleaves were found on shoots grown in microbox with greenfilter. Chlorophyll analysis revealed no significantdifferences on three types of microbox, however visualobservation showed that leaves were greener on microboxwith green filter. The stomata condition of shoots onmicrobox with green filter were similar with those ofmother plants in green house, while different condition ofstomata were found on shoots grown in microbox withyellow filter or without filter. In normal environment suchas at the field and green house, most of stomata wereclosed, in microbox provided with filter on the closure,most of stomata were half open, while on microbox withoutfilter most of stomata were wide open.bstrakDalam kultur jaringan tanaman, tabung/botol kulturditutup rapat dengan penutup yang dilengkapi ulir,aluminium foil, parafilm atau plastik wrap. Kondisitersebut menghambat pertukaran udara dalam tabung kultursehingga sering memberikan pengaruh negatif terhadappertumbuhan eksplan. Penggunaan penutup berventilasidapat meningkatkan kualitas udara dalam lingkungantabung/botol kultur. Oleh karena itu microbox denganpenutup berfilter diuji sebagai wadah untuk menumbuhkaneksplan karet pada tahap multiplikasi, yaitu microboxberfilter kuning dengan nilai Kv sebesar 13,09 (GasExchange (GE)/hari dan berfilter hijau dengan nilai Kvsebesar 81,35 GE/hari, sedangkan sebagai kontrol adalahmicrobox tanpa filter (tertutup rapat). Penelitian bertujuanmengamati kondisi tunas di dalam microbox berfilter,meliputi morfologi, stomata dan kandungan klorofil. Hasilpenelitian menunjukkan bahwa tinggi tunas tidak berbedanyata pada masing-masing microbox. Jumlah daun barudan daun gugur berbeda nyata, dimana pembentukan daunbaru terbanyak terdapat pada tunas dalam microboxberfilter kuning maupun hijau. Ukuran dan warna daunterlihat normal pada tunas dalam microbox berfilter hijau.Analisis kandungan klorofil tidak menunjukkan perbedaannyata, namun pengamatan visual menunjukkan bahwa daunlebih hijau pada microbox dengan filter hijau. Kondisistomata daun dari tunas dalam microbox dengan penutupberfilter hijau menyerupai stomata tanaman induk yangterdapat di rumah kaca dan lapangan, sedangkan kondisistomata berbeda ditemukan pada tunas dalam microboxberfilter kuning atau tanpa filter. Pada lingkungan normalseperti lapangan dan rumah kaca, sebagian besar stomatamenutup, pada wadah dengan tutup berfilter stomata agakmembuka sedangkan pada microbox tanpa filter sebagianbesar stomata terbuka lebar.

Sintesis karboksimetil selulosa dari sisa baglog jamur tiram (Pleurotus ostreatus) (Synthesis of carboxymethyl cellulose from ex-baglog of oyster mushroom (Pleurotus ostreatus)) Firda DIMAWARNITA; TRI - PANJI
E-Journal Menara Perkebunan Vol 86, No 2 (2018): Oktober 2018
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Oil palm empty fruit bunches (OPEFB) contain high organic materials that can be used as medium for growing white oyster mushroom (Pleurotus ostreatus).Cellulose content in the OPEFB is high (33%), enabling it to be converted to carboxymethyl cellulose (CMC). This study determined the characteristics of the CMC produced from the waste of growth media of oyster mushrooms (baglog). The composition of the baglog consists of 70.3% OPEFB; 23.4% sawdust; 4.5% bran; 1.3% CaCO3; and 0.4% TSP. The CMC was prepared from the ex-baglog of the mushrooms including delignification, alkalization, carboxylation, and characterization of the product using Fourier Transform Infrared Spectroscopy (FTIR), X-Ray Difraction (XRD) and Scanning Electron Microscopy Analysis (SEM). The results showed that the raw material after treatment contained 80.20% a cellulose, 12.32% hemicellulose, and no lignin was found. FTIR-based functional group analysis of the CMC and the commercial CMC was found to be present at 1091,37 cm-1and 1016,84 cm-1for the C-O bond. SEM analysis of the sample with no chemical bleaching for further delignification showed that small impurities were still present. The CMC treated with 10% sodium hydroxide exhibited 0.64 degree of substitution, 43 cP viscosity, and 73.40% purity. Based on these results, ex-baglog of white oyster mushroom can be extracted into CMC.[Keywords:OPEFB, CMC, delignification, Pleurotus ostreatus, XRD, SEM]. Abstrak Tandan kosong kelapa sawit (TKKS) mengandung bahan organik tinggi yang bisa dijadikan sebagai media pertumbuhan jamur tiram putih (Pleurotus ostreatus). Kandungan selulosa dalam TKKS (33%) yang mungkin dikonversi menjadi karboksimetil selulosa (CMC). Penelitian ini bertujuan mencirikan CMC yang dihasilkan dari limbah media pertumbuhan jamur tiram (baglog). Komposisi baglog sebagai media pertumbuhan jamur tersebut terdiri atas TKKS 70,3%; serbuk gergaji 23,4%; dedak 4,5%; CaCO31,3%; dan TSP 0,4%. Penyiapan CMC dari ex-baglog jamur meliputi delignifikasi, alkalisasi, karboksilasi, dan karakterisasi produk CMC dengan analisis Fourier Transform Infrared Spetroscopy(FTIR), X-Ray Difraction(XRD) dan Scanning Electron Microscopy(SEM). Hasil penelitian menunjukkan bahwa ex-baglog setelah perlakuan mengandung ɑ-selulosa sebanyak 80,20%, hemiselulosa 12,32%, lignin 0%, dan sisanya merupakan impurities(b/b). Gugus fungsi CMC dari TKKS dan CMC komersial memperlihatkan serapan inframerah pada 1091 cm-1dan 1017 cm-1untuk ikatan C-O. Analisis dengan mikroskop elektron menunjukkan bahwa tanpa delignifikasi lebih lanjut, masih ditemukan kotoran. Karakteristik CMC yang diolah dengan natrium hidroksida 10% memiliki derajat substitusi 0,64, viskositas 43 cP, dan kemurnian 73,40%. Hasil tersebut menunjukkan bahwa sisa baglog perumbuhan jamur tiram dapat diekstraksi menjadi CMC. [Kata kunci:TKKS, CMC, delignifikasi, Pleurotus ostreatus, XRD, SEM].

Development of tobacco plant cells in the presence of kanamycin at various levels for transgenesis Perkembangan sel tanaman tembakau pada kanamisin berbagai konsentrasi untuk transgenesis D SANTOSO; Ferry I CUGITO; H MINARSIH
E-Journal Menara Perkebunan Vol 68, No 2: Desember 2000
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Ringkasan Diferensiasi sel tanaman dalam proses regenerasi tanaman transgenik umumnya dilakukan bersamaan dengan proses seleksi menggunakan bahan penyeleksi. Kanamisin merupakan salah satu antibiotika yang biasa digunakan dalam proses seleksi. Dengan spektrum yang luas, kanamisin menghambat pertumbuhan sel dan mengganggu proses translasi pada saat ekspresi gen. Untuk tujuan regenerasi tanaman transgenik yang mengeks-presikan gen NPTII, konsentrasi kanamisin perlu dioptimasi sehingga cukup untuk membedakan sel yang tertransform dengan yang tidak tertransform. Penelitian ini betujuan untuk mempelajari perkembangan eksplan tembakau pada media regenerasi yang mengandung kanamisin. Kecepatan inisiasi tunas dan jumlah tunas terbentuk merupakan kriteria utama untuk evaluasi. Ekstrak protein dari eksplan yang berregenerasi dianalisa dengan SDS-PAGE untuk melihat kemungkinan keterlibatan protein tertentu dalam proses regenerasi tersebut. Hasil penelitian menunjukkan bahwa konsentrasi optimum kanamisin untuk tujuan tersebut adalah 50 mg/L, dimana tunas tembakau transgenik terinisiasi pada hari ke 25 kultur sedangkan eksplan non-transgenik hingga hari ke 56 kultur tidak mampu menginisiasi tunas. Data analisis protein menunjukkan adanya 3 protein dengan ukuran terdenaturasi relatif kecil, antara 14,5 hingga 21,5 kDa pada eksplan yang berregenerasi, namun tidak dijumpai pada ekstrak eksplan yang tidak berregenerasi. Ketiga protein ini kemungkinan terlibat dalam proses regenerasi. Summary Plant cell differentiation toward regeneration of transgenic plants is usually conducted simultaneously with selection process in the presence of selecting agent. Kanamycin is one of antibiotics widely used as selection agent. Having a wide spectrum activity, kanamycin hinders cell growth through inhibition of translation process during gene expression. To regenerate transgenic plant expressing NPTII gene, the level of kanamycin has to be optimized so that high enough to differentiate genetically transformed cells from those untransformed. This research is aimed to investigate in vitro development of tobacco cells toward plantlet regeneration on the media supplemented with kanamycin. The rate of shoot initiation and number of shoots formed are the major criteria evaluated. Protein extracts of the regenerated explants were analyzed with SDS-PAGE to examine possible involvement of specific proteins in the regeneration process. The experimental result suggested that optimum level of kanamycin for the purpose is 50 mg/L, by which transgenic tobacco shoots were initiated at 25-day culture whereas the untransformed explants did not initiated any shoots even though after 56-day culture. Preliminary data from the protein analysis indicated the presence of relatively small size denatured proteins, between 14.5 and 21.5 kDa, likely to involved in the regeneration process.

Respons molekuler Hevea brasiliensis ethylene response factors (HbERFs) sebagai marka ekspresi gen terhadap stimulasi ethephon pada klon-klon tanaman karet Moleculer response of Hevea brasiliensis ethylene response factors (HbERFs) as expression marker genes in response to ethephon stimulation in rubber tree clones Riza Arief PUTRANTO; . KUSWANHADI; Pascal MONTORO
E-Journal Menara Perkebunan Vol 82, No 2: Desember 2014
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Abstract Real-Time quantitative RT-PCR technique is a sensitive method for measuring the accumulation of gene transcripts. This widely used technique in a variety of plant species; including rubber tree (Hevea brasiliensis) must meet basic criteria in order to produce accurate gene expression markers. Gene expression markers associated to the response of ethephon stimulation such as the Hevea brasiliensis Ethylene Response Factors (HbERFs) family has been characterized in a single rubber clone. It is known that the effect of genotype on rubber tree clones can give different expression of the same gene. This difference can be converted into a profile that characterizes clones to a certain trait. This study aimed to identify gene expression profile in response to ethephon stimulation using six HbERFs (HbORA47, HbRAP2.3, HbERF12, HbERF3, HbABR1, HbRRTF1) in three rubber tree clones having contrasted latex metabolism (PB 260, SP 217, and RRIM 600). Total RNA was isolated from 18 samples and used for cDNA synthesis. The quality of cDNAs was examined by PCR using HbActin primer. HbRH2b was selected among the 11 housekeeping genes to be used as an internal control in gene expression analysis. Gene expression analysis resulted to an induction and inhibition of HbERFs by ethephon stimulation which are specific to a particular clone. Expression profile of three Hevea clones showed distinct characteristics. The high latex metabolism clone PB 260 was characterized by the upregulated expression of HbRAP2.3 and HbERF12. The low latex metabolism clone SP 217 was characterized by the upregulated expression of HbRAP2.3 and HbRRTF1. Meanwhile, the profile of intermediate latex metabolism clone RRIM 600 was shown by downregulated expression of HbORA47 and up-regulated expression of HbABR1. This study shows that HbERFs gene family is an important expression marker because it can inform physiological conditions of rubber clones associated in response to ethephon. AbstrakTeknik Real-Time quantitative RT-PCR merupakan metode sensitif untuk mengukur akumulasi transkrip dari gen. Teknik yang telah banyak digunakan pada berbagai spesies tanaman, termasuk tanaman karet (Hevea brasiliensis) ini harus memenuhi kriteria dasar agar meng-hasilkan marka ekspresi gen yang akurat. Beberapa marka ekspresi gen terkait respons terhadap stimulasi ethephon seperti famili gen Hevea brasiliensis Ethylene Response Factors (HbERFs) telah dikarakterisasi pada satu klon tanaman karet. Sebagaimana diketahui, efek genotip pada klon tanaman karet dapat memberikan ekspresi yang berbeda dari gen yang sama. Perbedaan ekspresi tersebut dapat dikonversi menjadi sebuah profil yang menjadi karakteristik klon karet terhadap perlakuan tertentu. Penelitian ini bertujuan untuk mengidentifikasi profil ekspresi gen HbERFs pada tiga klon tanaman karet (PB 260, SP 217, dan RRIM 600) yang memiliki metabolisme lateks yang berbeda terhadap respons stimulasi ethephon dengan menggunakan enam gen HbERFs (HbORA47, HbRAP2.3, HbERF12, HbERF3, HbABR1, HbRRTF1). RNA total diisolasi dari 18 sampel dan digunakan untuk sintesis cDNA. Kualitas cDNA diperiksa dengan PCR menggunakan primer HbActin. Gen HbRH2b terseleksi diantara 11 gen housekeeping digunakan sebagai kontrol internal pada analisis ekspresi gen. Hasil dari analisis ekspresi gen menunjukkan bahwa stimulasi ethephon memiliki efek induksi dan inhibisi gen yang spesifik untuk klon tertentu. Profil ekspresi dari tiga klon tanaman karet yang diuji memperlihatkan perbedaan karakteristik. Klon metabolisme tinggi PB 260 ditunjukkan dengan ekspresi positif dari gen HbRAP2.3 dan HbERF12. Klon meta-bolisme rendah SP 217 ditunjukkan oleh ekspresi positif gen HbRAP2.3 dan HbRRTF1. Sedangkan klon metabo-lisme intermedier RRIM 600 memiliki profil ekspresi negatif dari HbORA47 dan ekspresi positif dari HbABR1. Penelitian ini memperlihatkan bahwa famili gen HbERFs merupakan marka ekspresi yang penting karena dapat menginformasikan kondisi fisiologis klon tanaman karet terkait respons terhadap ethephon.

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Hayati Minarsih

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Home Page

OAI Link

Editorial Team

Contact

Reviewer

Google Scholar

Contact Name Hayati Minarsih

Contact Email menaraperkebunanppbbi@gmail.org

Phone -

Journal Mail Official menaraperkebunan@iribb.org

Editorial Address Jalan Taman Kencana No.1 Bogor 16128, Jawa Barat

Location Kab. bogor, Jawa barat INDONESIA

Abstract

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Abstract

Abstract

Abstract

Contact Name
Hayati Minarsih

Contact Email
menaraperkebunanppbbi@gmail.org

Phone
-

Journal Mail Official
menaraperkebunan@iribb.org

Editorial Address
Jalan Taman Kencana No.1 Bogor 16128, Jawa Barat

Location
Kab. bogor,

Jawa barat

INDONESIA