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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,315 Documents
 347   348   349   350   351 
Assessment of rhizome yield of local Indonesian turmeric (Curcuma longa L.) during two growing seasons REVIANA AULIA; HARIS MAULANA; YOSHUA LIBERTY FILIO; NURUL AMELIA SHAFIRA; PUTRI ARDHYA ANINDITA; TARKUS SUGANDA; VERGEL CONCIBIDO; AGUNG KARUNIAWAN
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230534

Abstract

Abstract. Aulia R, Maulana H, Filio YL, Shafira NA, Anindita PA, Suganda T, Concibido V, Karuniawan A. 2022. Assessment of rhizome yield of local Indonesian turmeric (Curcuma longa L.) during two growing seasons. Biodiversitas 23: 2534-2543. In Indonesia, rhizome yield evaluation across diverse growing seasons is very useful for selecting turmeric genotypes that have the potential to be developed into commercial varieties. Evaluation using multiple measurements has high accuracy. This study aimed to select turmeric genotypes based on differences in agro-morphological traits, identify genotypes by season interactions (GEIs), and select stable and high-yielding turmeric during two seasons. The study was conducted for two growing seasons (Planting Season 1 in January - October 2019 and Planting Season 2 in January - October 2020) using an augmented design. Cluster analysis based on agro-morphological traits was used to select turmeric genotypes based on their proximity. A combined analysis of variance (ANOVA) was used to estimate the effect of GEIs on rhizome yield and yield attributes. Rhizome yield evaluation was analyzed using parametric and nonparametric measurements. The results showed that twenty-five turmeric genotypes were selected based on agro-morphological differences. GEIs caused the variation of rhizome yield with a contribution of 34.88%, and yield attributes of 7.04% for weight per plant (WPP), 10.97% for rhizome width (RW), 11.95% for Petiole length (PL), 47.25% for lamina length (LL), and 25.44% for lamina width (LW). The results of parametric and nonparametric measurements selected six genotypes of turmeric into ideal groups, namely G4 (CL-12), G6 (CL-20), G9 (CL-30), G12 (CL-37), G22 (CL-82), and G26 (Cek 1). They can be developed as superior local commodities and used as breeding materials for turmeric plants in the future.
Species diversity of subterranean ants in Rangsit Marsh, Khlong Luang District, Pathum Thani Province, Thailand CHANATE WANNA WANNA; NARUMON BOONMAN; SIRIRAT PHAKPAKNAM; VACHIRAPORN PIKULTHONG; WEEYAWUT JAITRONG; RUNGTIP SOI-AMPORNKUL
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230312

Abstract

Abstract. Wanna C, Boonman N, Phakpaknam S, Pikulthong V, Jaitrong W, Soi-Ampornkul R. 2022. Species diversity of subterranean ants in Rangsit Marsh, Khlong Luang District, Pathum Thani Province, Thailand. Biodiversitas 23: 1283-1292. The present study aimed to compare species diversity and abundance of subterranean ants in three habitats: scrub forest, forest plantations, and glades at Rangsit Marsh, Khong Luang District, Pathum Thani Province, Thailand. The ant samples were collected twice a month during the rainy season (June-August 2019) and dry season (September-November 2019) using a pitfall trap in the soil. A total number of 6,305 individuals belonging to 4 subfamilies, 16 genera, and 16 species of ants were recorded. The subfamilies Myrmicinae comprising 6 species were the most prevalent, followed by 4 species of Formicinae, 3 species of Dolichoderinae, and 3 species of Ponerinae. The Shannon-Wiener species diversity index indicated the diversity was the highest in the glade (1.951), followed by the forest plantation (1.635), and lastly the scrub forest (0.419). Sorensen’s similarity coefficient to determine the similarity in community composition was highest between the forest plantation and the glade at 63.40%, and then between the scrub forest and the forest plantation at 44.30%, and between the scrub forest and the glade at 39.60%. This indicated that both ant species diversity and community composition were distinctly varied in these three sites. The rainy season revealed higher species richness than the dry season. The highest occurrence of ant species was for Iridomyrmex anceps (Roger, 1863), which was recorded as uncommon and was the most abundant species in the glade, while Anoplolepis gracilipes (Smith, 1857) and Carebara diversa (Jerdon, 1851) were the most abundant species in the scrub forest and forest plantation, respectively. Therefore, this study revealed that different habitat types and seasons resulted in differences in subterranean ant species diversity.
First report of seaweed-associated yeast from Indonesia: Species composition and screening of their polysaccharides-degrading enzymes MADA TRIANDALA SIBERO; EVAN HANSEL FREDERICK; AGUS SABDONO; DIAH PERMATA WIJAYANTI; DELIANIS PRINGGENIES; OCKY KARNA RADJASA; DEWI SESWITA ZILDA; RETNO MURWANI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230327

Abstract

Abstract. Sibero MT, Frederick EH, Sabdono A, Wijayanti DP, Pringgenies D, Radjasa OK, Zilda DS, Murwani R. 2022. First report of seaweed-associated yeast from Indonesia: Species composition and screening of their polysaccharides-degrading enzymes. Biodiversitas 23: 1408-1419. Yeast has been widely utilized in various industries due to its enzyme properties. Therefore, plenty of studies focus on exploring yeast biodiversity from diverse sources. However, there are limited reports regarding marine yeast biodiversity and its potential from Indonesia. This study aimed to isolate and identify the seaweed-associated yeast from Jepara in Central Java and Sepanjang Beach in Gunung Kidul, Yogyakarta, then examined their potential to produce extracellular polysaccharides-degrading enzymes (EPEs). Marine yeasts were isolated using standard marine agar (STD) and potato dextrose agar (PDA). All isolates were characterized by their salinity tolerance, morphology, and species confirmation using DNA barcoding. Three EPEs consisting of agarase, alginate-lyase, and carrageenase were screened using polysaccharides-enriched agar media. A specific agarase encoding gene was detected with specific primers. In total, 21 seaweed-associated yeast were successfully isolated from 6 seaweeds and noted as facultative marine yeast. The DNA barcoding study discovered that these yeasts belonged to 5 genera, consisted of Aureobasidium, Candida, Debaryomyces, Hortaea, and Rhodotorula. Moreover, Candida was noted as the most abundant genus (71.42%). It was noted that Hortaea werneckii MTJ.11 and MTJ.13 were positive for all enzymes; Aureobasidium melanogenum MTGK.31 gave a positive result for agarase and carrageenase; while [Candida] zeylanoides MTGK.23 only exhibited alginate-lyase activity. Unfortunately, none of the primers used to detect the presence of genes encoding polysaccharide-degrading enzymes were successfully amplified.
Potential of Maranta arundinacea residues for recycling: Analysis of total phenolic, flavonoid, and tannin contents Supaporn Iamkeng; Somtop Santibenchakul; Najjapak Sooksawat
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230303

Abstract

Abstract. Ieamkheng S, Santibenchakul S, Sooksawat N. 2022. Potential of Maranta arundinacea residues for recycling: Analysis of total phenolic, flavonoid, and tannin contents. Biodiversitas 23: 1204-1210. The potential of Maranta arundinacea L. residues was evaluated for their nutrient composition as organic fertilizer and for the presence of the total phenolic, flavonoid, and tannin contents as phytochemical resources. This arrowroot was collected from seven different locations and planted under organic conditions. The leaves contain 1.28% total nitrogen (total N) and 1.71% total potassium (total K) that might be used as an organic component in fertilizer. The stems contain 3.25% moisture and a C/N ratio of 81.45 which might serve as the good mulch. The total phenolic, flavonoid and tannin contents of M. arundinacea differed in different plant parts (leaves, stem, rhizome residue), age (6, 9, 12 months), and sampling locations (Th-TK, Th-R, Th-SyK, Th-Kpc, Th-Chan, Th-Sk, Kh-B). The high total phenolic content was obtained from the Th-Kpc leaves at the 6-month-old plant (0.268 mg GAE)/g DW). The high total flavonoid content was obtained from the Kh-B rhizome residue at the 9-month-old plant (0.379 mg QE)/g DW). The high total tannin content was obtained from the Th-Chan rhizome residue at the 9-month-old plant (4.746 mg tannin/g DW). This study indicated that the rhizome residues were an abundant source of total tannin; that might be potential to be used in the food and medicinal industries. Leaves and stem residues might be useful in organic farming.
Odonatofauna in the freshwater system of Kibalabag, Malaybalay City, Bukidnon, Philippines Don Mark E Guadalquiver; Olga M Nuneza; Reagan Joseph T Villanueva
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230419

Abstract

Abstract. Guadalquiver DME, Nuneza OM, Villanueva RJT. 2022. Odonatofauna in the freshwater system of Kibalabag, Malaybalay City, Bukidnon, Philippines. Biodiversitas 23: 1857-1863. Despite the critical importance of freshwater ecosystems to human populations and biodiversity, many anthropogenic practices continue to imperil such habitats. An excellent way to monitor the integrity of these ecosystems is through bioindicator organisms like insects of order Odonata, which are highly sensitive to environmental changes. In Malaybalay City, Philippines, the freshwater system in barangay Kibalabag is the primary source of potable water. Thus, to gain insight into its integrity and health, the present study seeks to determine adult Odonata species composition and diversity in the area. Opportunistic sampling using sweep netting and handpicking was conducted in four sampling sites. Twenty-five species were identified, comprising 230 individuals under nine families and 21 genera. Endemism of 65% (17 species) was recorded, with five species exclusive to Mindanao Island and three species classified as threatened. A high ratio of Zygopterans to Anisopterans, indicative of pristine conditions, was observed. Computation of biodiversity indices revealed that Site 2 (Wetland) is the most diverse (H’: 2.582) due to habitat variability. Cluster analysis also showed that Sites 1 (Kibalabag falls) and 2 were most similar. Species assemblage in these sites and high richness in Site 1 demonstrated high habitat integrity and good water quality, whereas the species assemblage in Sites 3 and 4 connotes habitat disturbance. The high endemicity and moderate diversity showed that the area is a healthy and suitable habitat for Odonata, emphasizing the need for its conservation and proper management.
The diversity and distribution of Alpinia zerumbet clade in West Malesia EKA SETIAWAN; MARLINA ARDIYANI; MIFTAHUDIN MIFTAHUDIN; AXEL DALBERG POULSEN; TATIK CHIKMAWATI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230403

Abstract

Abstract. Setiawan E, Ardiyani M, Miftahudin, Poulsen AD, Chikmawati T. 2022. The diversity and distribution of Alpinia Zerumbet  clade in West Malesia. Biodiversitas 23: 1734-1744. Alpinia belongs to the family Zingiberaceae and tribe Alpinioideae. One of the centres of Alpinia diversity is in Malesia, yet information regarding the taxon in this area is very limited. Furthermore, species richness and distribution in West Malesia have not been well documented particularly in respect of the taxonomical development following clade classification. The aim of the current paper is to study the morphological diversity and distribution of Alpinia Zerumbet clade in West Malesia to provide taxonomic information. Exploration was done in several locations in Java and Sumatra. Data were obtained from fresh and herbarium specimens preserved in three herbaria (BO, SING, BRUN), as well as digitally (L, E, and K). A total of 16 Alpinia species are placed in the clade of Zerumbet classified into a section, namely section Alpinia were recorded in West Malesia. They share several characters: i.e. absent or caducous secondary bracts, small or reduced lateral staminodes, and often having a petaloid and showy labellum. The highest diversity of Alpinia Zerumbet clade is recorded in the Philippines and Borneo (each has 7 species) and the lowest diversity is in Java (2 species). The most abundant habitat is in the lowlands and mountain rainforests. Most species of Alpinia Zerumbet clade are found in primary forest and secondary forest (Pinus or Agathis forest). A determination key was constructed based on information in the literature and direct observations of herbarium specimens.
Estimation of genetic parameters and heterosis through line × tester crosses of national sorghum varieties and local Indonesian cultivars Fathur Rachman; TRIKOESOEMANINGTYAS TRIKOESOEMANINGTYAS; DESTA WIRNAS; REFLINUR REFLINUR
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230349

Abstract

Abstract. Rachman F, Trikoesoemaningtyas, Wirnas D, Reflinur. 2022. Estimation of genetic parameters and heterosis through line × tester crosses of national sorghum varieties and local Indonesian cultivars. Biodiversitas 23: 1588-1597. Diverse gene sources possessed by local sorghum cultivars are potentially useful for superior varieties development. This study aimed to determine the genetic parameters and heterosis of sorghum lines derived from national varieties and local cultivars crosses. A total of eight F1 hybrids derived from line × tester mating design with four lines (PI-150-20A, Soraya 3 IPB, Kawali, Bioguma 1 Agritan) and two testers (Pulut 3 and Pulut 5) were used in the present study. This experiment was arranged in a randomized complete block design (RCBD) with three replications. Results showed that several agronomical important traits, such as plant height, leaf number, days to flowering, days to harvesting, panicle length, panicle diameter, and 1000-grain weight were significantly affected by additive gene action, while others by non-additive gene action. Based on field observation, three out of six parental lines showed the best performance of grain yields traits. Of these, Soraya 3 IPB × Pulut 5 and Bioguma 1 Agritan × Pulut 5 crosses were the best cross combination showing high values for both combining ability and heterosis parameters. These findings would help breeders to determine the selection methods for desirable traits and cross combinations to develop a new variety with high yield performance.
Molecular identification of Eurycoma longifolia Jack from Sumatra, Indonesia using trnL-F region KUSUMADEWI SRI YULITA; ARIDA SUSILOWATI; HENTI HENDALASTUTI RACHMAT; SUSILA SUSILA; ASEP HIDAYAT; FIFI GUS DWIYANTI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230323

Abstract

Abstract. Yulita KS, Susilowati A, Rachmat HH, Susila, Hidayat A, Dwiyanti FG. 2022. Molecular identification of Eurycoma longifolia Jack from Sumatra, Indonesia using trnL-F region. Biodiversitas 23: 1374-1382. Eurycoma longifolia Jack (Simaroubaceae) or pasak bumi is a popular medicinal plant from Southeast Asia’s rainforests that is used as an aphrodisiac, antimicrobial, anti-malaria antidiabetic, antiulcer, and anticancer agent. However, the increasing demand for this species for medicinal industries has led to illegal export in Indonesia. This study aimed to determine the specific genetic variation and develop DNA barcode using trnL-Fregion for E. longifolia originating from Sumatra, Indonesia. Twenty-two samples of the species were collected from four locations in Sumatra. An aligned sequence of the trnL-Fwas 960 bp with an A/T rich region (A: 30.2%, T: 34.5%, C: 16.7%, and G: 18.7%). The homology search using BLASTn of the GenBank NCBI showed that the nucleotide composition of the species was similar (99.9%) to the partial trnL-Fregion of E. longifolia MH751519 and E. apiculata GU593014. Close examination of the gene structure and composition showed that the DNA sequences have five nucleotides variations that were not possessed by the reference E. longifolia, and other taxa used. The obtained variations occurred mostly in the trnL intron region, and the phylogenetic analysis showed that the correct identity of the species of the samples by their position was at a similar clade as the other accessions of E. longifolia.
Remediation of chlorpyrifos-contaminated soils by crude secondary metabolites of Trichoderma harzianum T213 and its effect on maize growth LOEKAS SOESANTO; RISMA ARSI SUSANTI; ENDANG MUGIASTUTI; ABDUL MANAN; MURTI WISNU RAGIL SASTYAWAN; JOKO MARYANTO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230526

Abstract

Abstract. Soesanto L, Susanti RA, Mugiastuti E, Manan A, Sastyawan MWR, Maryanto J. 2022. Remediation of chlorpyrifos-contaminated soils by crude secondary metabolites of Trichoderma harzianum T213 and its effect on maize growth. Biodiversitas 23: 2464-2470. The study was conducted to determine the role of Trichoderma harzianum T213 crude secondary metabolites on the growth of maize plants and the reduction of chlorpyrifos on contaminated soils. A randomized block design was used in this study with four treatments. The treatments applied on chlorpyrifos contaminated soil were: without the application of secondary metabolites (0%) and the application of T. harzianum T213 crude secondary metabolites at the concentration of 50, 100, and 150%. Variables observed were residual levels of insecticide in maize, plant height difference, number of leaves, plant fresh weight, and root length. The results showed that the application of T. harzianum T213 crude secondary metabolites effectively increased plant growth, including plant height, the number of leaves, plant fresh weight, and root length compared to control on chlorpyrifos-contaminated soil. The highest percentage (99.54%) of the reduction of chlorpyrifos residue was the application of 100% T. harzianum T213 crude secondary metabolites. It was followed by applying 50 and 150% T. harzianum T213 crude secondary metabolites by 99.39 and 99.14%, respectively.
Sustainability status of small-scale fisheries resources in Jakarta Bay, Indonesia after reclamation Andi Muhammad Yuslim Patawari; ZUZY ANNA; PURNA HINDAYANI; YAYAT DHAHIYAT; ZAHIDAH HASAN; INTAN ADHI PERDANA PUTRI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230401

Abstract

Abstract. Patawari AMY, Anna Z, Hindayani P, Dhahiyat Y, Hasan Z, Putri IAP. 2022. Sustainability status of small-scale fisheries resources in Jakarta Bay, Indonesia after reclamation. Biodiversitas 23: 1715-1725. Reclamation in Jakarta Bay was initially implemented by constructing a giant 60 km long embankment in the area and 17 small islands in front of the coast of North Jakarta, but then it was stopped in 2018. After reclamation closures have affected fishery resources, especially small-scale ones that rely on catchment areas around the coastal waters of Jakarta Bay. To ensure the resource utilization level that meets the needs of the present and future generations, managing sustainably small-scale fish resources is crucial. This study aimed to analyze the sustainability status of small-scale fisheries in Jakarta Bay after reclamation. The results showed that efforts to manage small-scale fishery resources in the waters of Jakarta Bay-from the dimensions of fisheries, ecological, social, legal and institutional- are in unsustainable conditions. To improve the status, policy makers should consider 16 prioritized attributes on ecology, resource potential, economic, social, legal and institutional.

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