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BIOTROPIA - The Southeast Asian Journal of Tropical Biology
ISSN : 02156334     EISSN : 1907770X     DOI : http://dx.doi.org/10.11598/btb
BIOTROPIA, The Southeast Asian Journal of Tropical Biology, is a scientific publication of the Southeast Asian Ministers of Education Organization (SEAMEO) – Southeast Asian Regional Center for Tropical Biology (BIOTROP). It publishes articles in the broad areas of tropical ecosystems and environmental impacts, biodiversity conservation and sustainable development and biotechnology.
Articles 545 Documents
ANALYSIS OF THE TEMPERATURE DEPENDENCE OF CO2 ASSIMILATION RATE (STUDY CASE: GLYCINE MAXL. MERR) TANIA JUNE
BIOTROPIA - The Southeast Asian Journal of Tropical Biology No. 24 (2005)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2005.0.24.176

Abstract

The maximum rate of carboxylation (Kcmax) and maximum rate of regeneration of Ribulose bisphosphate (RuBP) (controlled by the rate of electron transport, Jmax) arc two processes governing the photosynthetic capacity of plants. Both processes are affected by temperature. This paper examines how the response of these two photosynthetic capacities to temperature determines the temperature response curve of the CO2-assimilation rate for plants grown at different temperatures, by using the concept of the Farquhar €3 photosynthesis model. The goal is to use photosynthetic parameters from CO2 and light curves to predict the temperature dependence of the CO2-assimilation rate (A) of soybean and to estimate the preferred growth temperature. Analysis shows that the optimum temperature of the assimilation rate changes with the changing temperature dependence of carboxylation and regeneration of RuBP. Key words :  temperature dependence/soybean/modeling photosynthesis/preferred growth temperature.
POTENTIAL YIELD OF ACID-ADAPTIVE SOYBEAN PROMISING LINES IN ULTISOLS OF TANAH LAUT REGENCY, SOUTH KALIMANTAN PROVINCE, INDONESIA Kuswantoro, Heru
BIOTROPIA Vol. 23 No. 1 (2016): BIOTROPIA Vol. 23 No. 1 June 2016
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2016.23.1.561

Abstract

Soybean is an important food commodity after rice and corn in Indonesia. Until now soybean demand cannot be fulfilled by domestic production, although the chances of fulfillment can be attempted. One of the attempts to increase domestic production is soybean planting in acid dry land that is widely available in Indonesia. The research aimed to obtain soybean lines that are adaptive in acid dry land. A total of 10 soybean promising lines and two check varieties (Wilis and Tanggamus) were grown in acid dry land in Tanah Laut Regency, South Kalimantan Province, Indonesia. Experimental design used was randomized complete block design with four replications. The data were analyzed using analysis of variance and followed by Least Significant Different test. The results showed that the promising lines of SC5P2P3.5.4.1-5 and SC5P2P3.23.4.1-5 achieved production of 1.51 t/ha and 1.48 t/ha, respectively. These yields were higher than Wilis and Tanggamus varieties that reached 1.41 t/ha and 1.13 t/ha, respectively. These two promising lines had the potency to be developed in Tanah Laut Regency, South Kalimantan or other areaswith similar soil characteristics.
BEARDLESS BARB Cyclocheilichthys apogon (VALENCIENNES, 1842) (CYPRINIFORMES: CYPRINIDAE) IN MADURA ISLAND, INDONESIA Hasan, Veryl; Soemarno, Soemarno; Widodo, Maheno Sri; Wiadnya, Dewa Gede Raka
BIOTROPIA Vol. 28 No. 3 (2021): BIOTROPIA Vol. 28 No. 3 December 2021
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.3.1276

Abstract

The freshwater fish Beardless Barb Cyclocheilichthys apogon (Valenciennes, 1842) is a native species of Southeast Asia, including the western Indonesia area (Borneo, Sumatra, and Java). Previously, the species was found only in the mainland of Java Island. This paper provides the first record of C. apogon in the Lembung River, one of the major rivers in Madura Island, Indonesia, thereby extending the species distribution up to 150 km northeast from the place of earlier record. The specimens of C. apogon were characterized as follows: dorsal fin rays 12; anal fin rays 8–9; pectoral fin rays 17–18; lateral line scales 34–35. A detailed description of the morphological characters of the specimen is provided in this manuscript.
COMPATIBILITY STUDIES OF INTERSPECIFIC IN VITRO MICROGRAFTING OF AGARWOOD (Aquilaria malaccensis LAMK.) MATHIUS, NURITA TORUAN; SITUMORANG, JONNER; RACHMAWATI, DEWI RACHMAWATI; ANIDA
BIOTROPIA Vol. 15 No. 2 (2008): BIOTROPIA Vol. 15 No. 2 December 2008
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2008.15.2.69

Abstract

Aquilaria spp produced agarwood as nonwood  forest production, and has high economic value. A. malaccensis is susceptible to white rot diseases and termites. On the other hand most of the community plantations are a mixed culture with rubber trees, oil palms and with high risk of contamination causing white root diseases. Besides that, vegetative propagation by cuttings, stumping or air layering are still very difficult with low percentage of growth. The objectives of this research were to analyze the best suitable micrograft type, changes of SDS-PAGE protein band patterns of compatible and incompatible micrografts with several combinations of gaharu planlets in in vitro condition, and histology of union area between rootstocks and scion. The results showed that wedge or V type was the best of the micrografs. MS medium with the addition of 3 mg/L IBA was the best medium for gaharu planlet growth after micrografting. Acclimatization was conducted in husk chacoal and top soil  (1:1) medium  and grown under plastic house of 70% shading with paranet. Compatible combination (Ac/Am) of micrografting showed that anatomy structure of union area is the same as anatomy structure of non micrograftd planlet. While incompatible (Gv/Am)  micrografting produced necrotic layer growth from pith and parenchymateous tissues of the wood in union area   along  the middle of radial  shoot. Recovery period of union area between stocks and scion is initiated by callus formation from the pith and parenchymatous tissues of the wood. Callus will differentiate into mature cells or tissue and become  combined  phloem and xylem vessels between rootstocks and scion. SDS-PAGE protein band pattern on compatible combination was the same as plants originated from seedlings. While, incompatible combination produced new protein bands with molecular weight around  21 and 30 kD. Key words : Agarwood, Aquilaria spp, micrografting in vitro, incompatible micrografting, SDS-PAGE protein, incompatible histology.
ISOLATION AND CHARACTERIZATION OF MANNANOLYTIC THERMOPHILIC BACTERIA FROM PALM OIL SHELL AND THEIR MANNANASE ENZYME PRODUCTION PROPERTIES ANTONIUS SUWANTO; SUMARDI; MAGGY T HENAWIDJAJA; T RESNAWATI P URWADARIA
BIOTROPIA - The Southeast Asian Journal of Tropical Biology No. 25 (2005)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2005.0.25.211

Abstract

A mannanolytic thermophilic bacterium (L-07) was isolated from palm oil shell after 2 days ofenrichment in liquid medium supplemented with 1% palm kernel meal as mannan source. Sequenceanalysis of 16S-rRNA indicated that L-07 was similar (98%) to  Geobacillus stearothermophilus, aspecies of thermophilic aerobic bacteria. We found that  G. stearothermophilus L-07 producedextracellular β-1,4-mannanases, but no β-manosidase and α-galactosidase activities. The growth of L-07reached its maximum (3.0 x 106 cell/ml) at 12-20 hours, while the highest  β-mannanase activity (0.52U/ml) was observed in culture medium after 36 hours of cultivation at 60oC. The medium containinglocust bean gum was the best for producing extracellular β-1,4-mannanases compared with kolang kaling,konjak, and palm kernel meal. SDS-PAGE and zymogram analysis demonstrated that crude mannanasecomplex of L-07 from locust bean gum containing medium comprised three active bands with molecularweight of 85, 73 and 50 kDa.   Keywords :  Extracellular enzyme/mannanase/Geobacillus stearothermophilus
PROPOSED MODEL ON LEVELS OF DEGRADED LAND AT MERAWU WATERSHED, BANJARNEGARA REGENCY, CENTRAL JAVA PROVINCE, INDONESIA Sulistyo, Bambang; Gunawan, Totok; Hartono, Hartono; Danoedoro, Projo; Martanto, Rochmat
BIOTROPIA Vol. 24 No. 3 (2017): BIOTROPIA Vol. 24 No. 3 December 2017
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2017.24.3.730

Abstract

Conservation of degraded land in Indonesia requires maps of degraded land. The maps were established based on a model developed in 1998 by the then Indonesia Department of Forestry. The model has 2 weaknesses, i.e., 1. high level of uncertainty due to vector-based data used to build the thematic maps, and 2. parameter redundancy or duplication from the model. This research was aimed to build up a proposed model on levels of degraded land at Merawu Watershed using fully raster-based data supported with remote sensing and GIS techniques. Parameters analyzed were Slope, Erosivity (R), Erodibility (K), Slope Length and Steepness (LS), Cover and Management (C), Support Practice (P), and Percentage of Canopy Cover. These data were presented in fully raster format. The Management parameter was not explicitly used in this research because it was already represented by the C and P parameters. Five parameters were directly obtained using fully raster format, i.e., Slope, LS, C, P, and Percentage of Canopy Cover. The other 2 parameters went through spatial interpolation process before being presented as fully raster format. Correlation analysis among parameters was carried out. Parameters having high correlation coefficient (r ≥ 0.8) were excluded from the model to avoid redundancy. The proposed model only used parameters having low correlation coefficient. The research result showed that the determination of levels of degraded land was more accurate when using only erosion parameters, formulated as: Level of Degraded Land (LoD) ≈ Erosion ≈ R × K × LS × C × PL.
A COLLECTION OF TICKS (IXODIDAE) FROM SULAWESI UTARA, INDONESIA DURDEN, L.A.
BIOTROPIA No. 2 (1989)
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.1989.0.2.94

Abstract

Ixodid  ticks  were  collected  from  seven  species  of  endemic  murid  rodents  and  from  vegetation  in Sulawesi Utara,  Indonesia. Adult  ticks belonging  to  the species, Amblyomma babirussae, A. cyprium and Dermacentor  (Indocentor) steini were taken  from  the vegetation.  Immature  ticks assignable  to the genera, Haemaphysalis,  Amblyomma  and  Ixodes  infested  the murids with  Parauromys dominator and Maxomys musschenbroekii being  the  two most heavily  tick-infested host species. The data are  compared  to other  tick records from Sulawesi.
NOTES ON THE DISTRIBUTION OF INVASIVE FRESHWATER SNAIL POMACEA CANALICULATA (LAMARCK, 1822) AND P. INSULARUM ( D'ORBIGNY, 1835) IN INDONESIA MARWOTO, RISTIYANTI M.; NUR, NUR R. ISNANINGSIH
BIOTROPIA Vol. 18 No. 2 (2011): BIOTROPIA Vol. 18 No. 2 December 2011
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2011.18.2.247

Abstract

The freshwater snails and have been reported as importantinvasive species causing damage to crops and predominantly wetland rice in Asia. These snailsare known as “Golden Apple Snail” (GAS), an introduced species from Argentina.or known as “keong mas, keongmurbei” was introduced in Indonesia around 1983,and after more than 20 years, it now can be found very abundant at various habitats such asmarshes, ponds, irrigations, lakes and rice fields in almost all places in Indonesia.Based on the collections of these snails deposited in the MZB (Museum ZoologicumBogoriense, Research Center for Biology) and secondary data (references), the distributionof these two snails was studied. is widely distributed, while only found at Lake Semayang and Lake Balikpapan in Kalimantan. The distribution map ispresented and will be useful as a basic information to manage these invasive snails.
ENZYME ACTIVITY IN RELATION TO TOTAL K, Ca, Mg, Fe, Cu AND Zn IN THE OIL PALM RHIZOSPHERE OF RIAU’S PEATLANDS, INDONESIA Harianti, Mimien; Sutandi, Atang; Saraswati, Rasti; Maswar, Maswar; Sabiham, Supiandi
BIOTROPIA Vol. 25 No. 3 (2018): BIOTROPIA Vol. 25 No. 3 December 2018
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2018.25.3.862

Abstract

Enzyme activity can be used as an indicator of peat decomposition in the oil palm rhizosphere of peatlands. Oil palm plantation management requires fertilization in the rhizosphere to provide nutrients for oil palm growth. The state of total nutrients in the rhizosphere can influence enzyme activity. This research aimed to study enzyme activity in relation to nutrient content in the oil palm rhizosphere of peatlands. Using the explorative method in Riau's tropical peatlands, an oil palm plantation was chosen as the main site, and a degraded forest as well as a shrubland were chosen as comparison sites. In the oil palm plantation, peat samples were taken from peat adhering to oil palm roots at depths of 0–25 and 25–50 cm and at distances of 0–1, 1–2, 2–3, and 3–4 m from the trees. In the degraded forest and shrubland, samples were taken from selected plant roots at depths of 0–25 and 25–50 cm. The triplicate peat samples were then composited for analysis of enzyme activity and total nutrient content. Results showed that enzyme activity (urease, phosphatase, β-glucosidase, and laccase) in the oil palm rhizosphere decreased as the distance from trees and the depth of the rhizosphere increased. The decline in enzyme activity was caused by low peat pH and increased water content as well as organic carbon content. Enzyme activity increased with increasing oil palm age and ash content. Total K and Zn contents showed no correlation with enzyme activities. However, total Ca and Mg contents showed a positive correlation only with β-glucosidase activity. Total Fe and Cu contents showed a significantly negative correlation with enzyme activities (urease, phosphatase, β-glucosidase, and laccase). Enzyme activity in the rhizosphere of the degraded forest and shrubland was mostly lower than in the oil palm rhizosphere.
DIETARY EXPOSURE ASSESSMENT FOR AFLATOXIN B FROM PROCESSED PEANUT PRODUCTS IN MUNICIPALITY OF BOGOR 1 SETYAWATI DHARMAPUTRA, OKKY; SANTI, SANTI AMBARWATI; INA, INA RETNOWATI
BIOTROPIA Vol. 18 No. 1 (2011): BIOTROPIA Vol. 18 No. 1 June 2011
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2011.18.1.133

Abstract

A research on dietary exposure assessment for aflatoxin B (AFB1) fromprocessed peanutproducts in Municipality of Bogor was carried out. The objectives of this study were todetermine the contents of AFB1 in processed peanut products at retail levels, and to obtaininformation whether there is a risk to public health caused by the consumption of processedpeanut products contaminated by AFB1. Survey of processed peanut product consumptionwas carried out by interviewing each respondent using a questionnaire of weekly processedpeanut product consumption. Sampling of processed peanut products was conducted at thelocations where the respondents obtained processed peanut products. The number of roastedpeanuts with skin pods, flour-coated peanuts and or sauces samples was 33,respectively, while the number of and sauces samples was 18 and 12, respectively.The total number of processed peanut product sampleswas 129.AFB1contentwas determinedusingThin LayerChromatographymethod.Estimation of the dietary exposure assessmentwasdetermined using the actual survey data consisting of AFB1 content, consumption data andbody weight. The highest contaminated sample percentage and mean of AFB1 content wasfound in roasted peanuts with skin pods i.e. 42% of 33 samples and 43.2 μg/kg, respectively,followed by flour-coated peanuts (30% of 33 samples and 34.3 μg/kg), and or(21%of 33 samples and 17.1 μg/kg).Mean of estimated dietary exposure for AFB1 found inchildren was 15.2 ng kg bw day and 95 percentile exposure was 38.9 ng kg bw day , while inadults 9.0 ng kg bw day and 95 percentile exposure was 27.0 ng kg bw day . The excesscancer risk of AFB1 exposure in Bogor fromthis study on children and adults was calculated as193 and 115 cancers/year, respectively-1 -1 th -1 -1-1 -1 th -1 -1pecel gado-gadosiomay sataipecel gado-gado1.

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