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All Journal HAYATI Journal of Biosciences Jurnal Ilmu Pertanian Indonesia Jurnal Akuakultur Indonesia Buletin PSP Jurnal Teknologi Perikanan dan Kelautan Jurnal Pengolahan Hasil Perikanan Indonesia Jurnal Ilmu dan Teknologi Kelautan Tropis Jurnal Ilmu-Ilmu Perairan dan Perikanan Indonesia Jurnal Veteriner ILMU KELAUTAN: Indonesian Journal of Marine Sciences JURNAL TEKNOLOGI LINGKUNGAN Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (Journal of Natural Resources and Environmental Management) Omni-Akuatika Jurnal Biologi Tropis Jurnal Pengelolaan Perikanan Tropis (Journal Of Tropical Fisheries Management) Jurnal Iktiologi Indonesia (Indonesian Journal of Ichthyology) Habitus Aquatica : Journal of Aquatic Resources and Fisheries Management Indonesian Journal of Mollusk COJ (Coastal and Ocean Journal) Depik Jurnal Ilmu-Ilmu Perairan, Pesisir dan Perikanan Depik Jurnal Ilmu-Ilmu Perairan, Pesisir, dan Perikanan Journal of Marine Studies
Nurlisa Alias Butet
Departemen Manajemen Sumberdaya Perairan, Fakultas Perikanan Dan Ilmu Kelautan, IPB University, Bogor, 16128, Indonesia
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemistry Decision Sciences, Operations Research & Management Earth & Planetary Sciences Education Engineering Environmental Science Immunology & microbiology Library & Information Science Social Sciences Veterinary

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Article Review: Identifications and Geographic Distribution of Six Anisakis Species (Nematoda: Anisakidae) in Indonesia Forcep Rio Indaryanto; Mohammad Mukhlis Kamal; Nurlisa A. Butet; Ridwan Affandi; Risa Tiuria
Jurnal Veteriner Vol 25 No 1 (2024)
Publisher : Faculty of Veterinary Medicine, Udayana University and Published in collaboration with the Indonesia Veterinarian Association

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.19087/jveteriner.2024.25.1.143

Abstract

Anisakis is a zoonotic nematode that causes anisakiasis in Europe and Asia. Food safety has recently become a major concern for consumers; therefore, accurate identification of Anisakis larvae is necessary for the correct diagnosis of Anisakis infection in humans and fish and for improving food safety. From 2001 to 2023, Anisakis examinations were carried out in 33 areas of Indonesian territory. Morphometric Anisakis of Indonesia generally have a body length of 0.10-34.50 mm with a diameter of 0.30-0.42 mm. Based on morphological and genetic identification, identified six species anisakis in Indonesia (A. simplex, A. physeteris, A. pegreffii, A. berlandi, A. typica and Anisakis sp. HC-2005), or identified six Anisakis genotypes based on genetic identification, namely A. typica (s.s), A. typica var Indonesiansis, A. physeteris, A. pegreffii, A. berlandi and Anisakis sp. HC-2005.Decapterus sp., Thyrsitoides marleyi, Euthynnus afifinis, Auxis rochei, Gempylus serpens, Katsuwonus pelamis and Trichiurus lepturus have a high prevalence (>90%), indicating that they are often infected with Anisakis. Anisakis spread throughout the waters in Indonesia with various types of fish as hosts and A. typica is the predominant species in Indonesia.
DNA Barcoding and Phylogenetic Analysis of Commercially Important Groupers (Serranidae) in Raja Ampat using gene marker Cytochrome c Oxidase I (COI) Ayu, Inna Puspa; Mashar, Ali; Wardiatno, Yusli; Butet, Nurlisa A.; Sani, L. Mukhsin Iqbal; Irianda, Nadya Jeny; Madduppa, Hawis; Gelis, Ester R. E.; Lane, Christopher; Borbee, Erin; Subhan, Beginer
ILMU KELAUTAN: Indonesian Journal of Marine Sciences Vol 29, No 3 (2024): Ilmu Kelautan
Publisher : Marine Science Department Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/ik.ijms.29.3.321-328

Abstract

Groupers are one of the most important and commercial fishes; many of the species are classified as Life Reef Fish Trade (LRFT). The number of grouper species in these locations may be more diverse than at other sites. Identifying the species number of a grouper is essential for mapping reef fitness. However, morphological identification of groupers is relatively difficult. Molecular methods such as DNA barcoding could be an option and even serve as reliable validation. Therefore, this research was conducted to identify groupers belonging to the Serranidae family. The grouper samples were obtained from the fish market in Waisai, Raja Ampat, Indonesia. The DNA barcoding employed the COI genes to accurately identify groupers. The Qiagen DNeasy 96 tissue extraction kit was used to extract DNA, and Primer Fish F1/R1 was applied. The sequences were analysed using ClustalW in MEGA 7.0 and phylogenetic tree was generated using the NJ (Neighbour Joining) method. Eleven species of groupers belonging to five taxa were discovered in Waisai, Raja Ampat. Anyperodon, Cephalopholis, Epinephelus, Plectropomus, and Variola are the grouper genera. Epinephelus was the predominant genus within the serranidae family, with 51.4% of the total. The International Union for Conservation of Nature's (IUCN) Red List category puts the majority of grouper species in the 'Least Concerned' category. This study confirmed the effectiveness of DNA barcoding for species identification and the value of the COI gene for Grouper's phylogenetic research. The outcome offers information about fisheries resources, which should be helpful in managing fisheries in reef ecosystems.
Molecular Characteristic Identification of Partial 16S rRNA Genes of Sperm Whales (Physeter macrocephalus Linnaeus, 1758) : Identifikasi Karakterstik Molekuler Gen 16S rRNA Parsial pada Paus Sperma (Physeter macrocephalus Linnaeus, 1758) Mukhlis Kamal, Muhammad; A Butet, Nurlisa; Rahayu, Endah Sri; Hakim, Agus Alim
Habitus Aquatica Vol 2 No 1 (2021): Habitus Aquatica : Journal of Aquatic Resources and Fisheries Management
Publisher : Department of Aquatic Resources Management, Faculty of Fisheries and Marine Science, IPB University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/HAJ.2.1.21

Abstract

Paus sperma (Physeter macrocephalus) merupakan salah satu mamalia laut yang dikategorikan dalam status vulnerable pada IUCN dan status Appendix I pada CITES. Identitas asli dari paus sperma secara molekuler dapat ditelusuri. Penelitian ini bertujuan untuk mengidentifikasi karakteristik molekuler paus sperma (P. macrocephalus) berdasarkan gen 16s rRNA parsial. Tiga contoh jaringan paus sperma yang dianalisis berasal dari perairan Laut Sawu, Nusa Tenggara Timur. Hasil identifikasi berdasarkan sekuen basa nukleotida gen parsial 16S rRNA menunjukkan bahwa ketiga contoh memiliki kemiripan dengan Physeter catodon sebesar 99%, dimana P. catodon merupakan sinonim dari P. macrocephalus. Pensejajaran sekuen nukleotida dengan outgroup (Balaenoptera physalus dan Balaena mysticetus) didapatkan nilai jarak genetik ketiga contoh dengan outgroup berkisar antara 0,0093–0,0726. Selain itu, didapatkan 25 nukleotida spesifik P. macrocephalus yang mampu membedakan dari spesies outgroup. Penelitian ini mampu memvalidasi spesies P. macrocephalus berdasarkan gen 16S rRNA dan dapat dijadikan sebagai marka molekuler yang kuat untuk identifikasi P. macrocephalus.
Preliminary study on the coconut crab (Birgus latro) rearing in captive pond Sulistiono, .; Kamal, M.M.; Butet, Nurlisa A.
Jurnal Akuakultur Indonesia Vol. 8 No. 1 (2009): Jurnal Akuakultur Indonesia
Publisher : Indonesian Society of Scientific Aquaculture (ISSA)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (155.791 KB) | DOI: 10.19027/jai.8.101-107

Abstract

Preliminary study on the coconut crab (Birgus latro) rearing was employed in captive pond at Citarate village, Lebak Regency (Banten) from May to December 2008.  The rearing activity was done in captive pond sized 5x5x1.3 m3 divided into 22 smaller ponds sized 1x1x1.3 m3 with a hiding hole (constructed by pile stones), supported by two small ponds sized 30x40x40 cm3 for sea and fresh water stocks, respectively.  The coconut crab (N=22 individuals at cement pond I and N=18 individuals at cement pond II) were reared in each small ponds (density: 1 individual/pond), feed by a piece of coconut (20-50 gram per individual in each cement pond).  The coconut and the water (sea and fresh water) were replaced for 2-3 times per week. Result of the study showed that survival rate was around 82% (ponds I) and 83% (ponds II), and mortality was around 18% (ponds I) and 18% (ponds II). The coconut crab growth at captive ponds I and II were around 17.5 and 52 gram per month, respectively. Key words:  Preliminary study, rearing, coconut crab (Birgus latro)   ABSTRAK Uji coba pemeliharaan kepiting kelapa (Birgus latro) dilakukan di kolam penangkaran di Desa Citarate, Kabupaten Lebak (Banten) pada Bulan Mei sampai Desember 2008.  Kegiatan pemeliharaan dilakukan pada bak semen berukuran 5x5x1.3 m2 yang terbagi menjadi 22 bak semen lebih kecil yang berukuran 1x1x1.3 m3 dilengkapi dengan tempat persembunyian (berupa tumpukan batu), serta bak kecil sebagai tempat penampungan air laut dan tawar masing-masing berukuran 30x40x40 cm3. Kepiting kelapa (N=22 ekor pada kolam I dan N=18 pada kolam II) dimasukkan ke dalam setiap kolam (kepadatan 1 individu/kolam), dan diberikan pakan utama berupa potongan kelapa ukuran sekitar 20-50 gram per individu per kolam.  Penggantian kelapa dan air (tawar dan laut) dilakukan 2-3 kali per minggu. Hasil uji coba pemeliharaan kepiting kelapa menunjukkan bahwa tingkat sintasan (survival rate) di kolam peliharaan berkisar 82 (Kolam I) dan 83% (Kolam II), sedangkan tingkat kematian (mortalitas) sebesar 18 (Kolam I) dan 17% (Kolam II).  Pertumbuhan kepiting kelapa di kolam penangkaran I dan masing-masing adalah sekitar 17,5 dan 52 gram per bulan. Kata kunci:  Uji coba, pemeliharaan, kepiting kelapa (Birgus latro).
Population dynamics of Parrotfish (Scarus rivulatus) in Seribu Islands Waters Nurfajar, Nurfajar; Boer, Mennofatria; Butet, Nurlisa A
Depik Jurnal Ilmu Ilmu Perairan, Pesisir, dan Perikanan Vol 13, No 2 (2024): AUGUST 2024
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.13.2.37243

Abstract

Parrotfish capture fisheries production in the Seribu Islands Waters is quite high. This study aims to determine several aspects related to parrotfish (S. rivulatus) population dynamics in the Seribu Islands Waters. This research was conducted for 12 months, starting from January to December 2022. The results of the analysis of the growth coefficient of male parrotfish are K=0.54 year-1, while females' growth coefficient is K=0.75 year-1. Growth parameters from the von Bertalanffy equation, for males Lt=312.4[1-exp-0.54(t-(-0.158))] and females Lt=280.4[1-exp-0.75(t-(0.12))]. Recruitment occurred twice during the 2022 period, with peak recruitment of males occurring in April and August and females in May and September. Completion mortality (F) was higher than natural mortality (M). Male parrotfish F=1.06M=0.63 and females F=4M=0.80. Mean first-capture size (Lc) for male fish Lc=174 mm and females 147 mm.Keywords:Over-exploitationParrotfishSeribu Islands
IDENTIFICATION AND PREVALENCE OF ECTOPARASITES IN BLUE SWIMMING CRAB (Portunus pelagicus Linnaeus, 1758) ON THE NORTH COAST OF JAVA: IDENTIFIKASI DAN PREVALENSI EKTOPARASIT PADA RAJUNGAN (Portunus pelagicus Linnaeus, 1758) DI PANTAI UTARA PULAU JAWA Shofirma, Adela; Krisanti, Majariana; Butet, Nurlisa A.; Mashar, Ali
Jurnal Teknologi Perikanan dan Kelautan Vol 16 No 2 (2025): MEI 2025
Publisher : Fakultas Perikanan dan Ilmu Kelautan, IPB University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24319/jtpk.16.189-197

Abstract

Besides overfishing, other factors that influence the decline in blue swimming crab (Portunus pelagicus) production are diseases caused by parasites. Poor environmental conditions could trigger parasite infestation on their host. This study aims to identify ectoparasites morphologically based on the research location and to analyze the prevalence of ectoparasites of the blue swimming crabs. Crab samples and data collection of aquatic environmental parameters were carried out at five locations in the northern part of Java Island, Indonesia: Pasuruan, Lamongan, Semarang, Cirebon, and Banten. The study was conducted from December 2021 to July 2023. Morphological identification of ectoparasites was carried out at the Biology Micro Laboratory I, Department of Aquatic Resources Management, IPB University. Interviews with fishermen were also conducted to ensure the crab catchment area around the research location. The number of blue swimming crabs obtained at each location varied, ranging from 25 to 35 individuals, consisting of large, medium, and small crabs. Based on the results of morphological identification, there were a total of five types of parasites found in all research locations, namely Allokepon sp., Chelonibia testudinaria, Octolasmis angulata, Octolasmis warwickii, and Octolasmis sp. The prevalence rate of crabs in each location was significantly different in five locations, namely Pasuruan, Lamongan, Semarang, Cirebon, and Banten, which were 80%, 74%, 80%, 12%, and 70%, respectively. The highest prevalence was in Pasuruan and Semarang. Factors affecting the prevalence rate of ectoparasites in blue swimming crabs included environmental quality such as temperature, salinity, pH, and dissolved oxygen (DO).
Population dynamics of Parrotfish (Scarus rivulatus) in Seribu Islands Waters Nurfajar, Nurfajar; Boer, Mennofatria; Butet, Nurlisa A
Depik Jurnal Ilmu Ilmu Perairan, Pesisir, dan Perikanan Vol 13, No 2 (2024): AUGUST 2024
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.13.2.37243

Abstract

Parrotfish capture fisheries production in the Seribu Islands Waters is quite high. This study aims to determine several aspects related to parrotfish (S. rivulatus) population dynamics in the Seribu Islands Waters. This research was conducted for 12 months, starting from January to December 2022. The results of the analysis of the growth coefficient of male parrotfish are K=0.54 year-1, while females' growth coefficient is K=0.75 year-1. Growth parameters from the von Bertalanffy equation, for males Lt=312.4[1-exp-0.54(t-(-0.158))] and females Lt=280.4[1-exp-0.75(t-(0.12))]. Recruitment occurred twice during the 2022 period, with peak recruitment of males occurring in April and August and females in May and September. Completion mortality (F) was higher than natural mortality (M). Male parrotfish F=1.06M=0.63 and females F=4M=0.80. Mean first-capture size (Lc) for male fish Lc=174 mm and females 147 mm.Keywords:Over-exploitationParrotfishSeribu Islands
Compositional analysis of invertebrate communities in Raja Ampat conservation zones using environmental DNA (eDNA) Ruzanna, Arina; Madduppa, Hawis; Butet, Nurlisa Alias
Journal of Marine Studies Volume 1, Issue 2 (July, 2024)
Publisher : Universitas Malikussaleh

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29103/joms.v1i2.17632

Abstract

Raja Ampat conservation area is divided into three zones: the core zone, the tourism zone, and the open zone. This region is crucial for sustainable fisheries and environmental management, yet it is under significant anthropogenic pressure. Accurate species detection is essential for inventory and diversity surveys, and environmental DNA (eDNA) methods have been shown to be more effective than conventional techniques. This study aimed to evaluate whether V9 primers could detect multispecies invertebrate compositions, assess community structure and contributions within each zone, and identify significant differences in invertebrate diversity among the zones. A total of 66 eDNA samples were collected from water and sediment columns across the three zones. Samples were extracted using the NucleoSpin„¢ kit (Macherey-Nagel) protocol, amplified with universal eukaryote primers targeting the 18S gene, and sequenced using Illumina MiSeq. Taxonomic analysis was performed using QIIME2 software and the SILVA database. The study identified 19 invertebrate species. The Shannon-Wiener (H') and Simpson (D) indices revealed greater species diversity in the core zone compared to the tourism and open zones. However, the Kruskal-Wallis test indicated no significant differences in species diversity across the zones. SIMPER analysis demonstrated a high percent contribution of species in each zone. This study highlights the effectiveness of eDNA methods for biodiversity assessment and offers valuable insights into invertebrate community structures within the Raja Ampat conservation area.
Keragaman genetik populasi giant snakehead (Channa micropeltes) menggunakan penanda Random Amplified Polymorphic DNA di perairan Taman Nasional Sebangau, Kalimantan Tengah Kamal, M Mukhlis; Butet, Nurlisa A.; Wibowo, Arif; Eva Muhajirah
Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (Journal of Natural Resources and Environmental Management) Vol 11 No 1 (2021): Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (JPSL)
Publisher : Pusat Penelitian Lingkungan Hidup, IPB (PPLH-IPB) dan Program Studi Pengelolaan Sumberdaya Alam dan Lingkungan, IPB (PS. PSL, SPs. IPB)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jpsl.11.1.141-151

Abstract

Giant snakehead yang juga dikenal dengan sebutan Toman merupakan ikan dengan cita rasa dan bernilai ekonomis. Penelitian ini bertujuan untuk mengetahui keragaman genetik populasi C. micropeltes di Taman Nasional Sebangau (TNS), Kalimantan Tengah menggunakan analisis molekuler dengan pendanda genetic Random Amplified Polymorphic DNA (RAPD). Primer yang digunakan pada penelitian ini yaitu OPE-07, OPD-03 dan OPG-10. Hasil menunjukkan bahwa persentase polimorfisme di perairan TNS tergolong rendah (43,1818%) dan heterozigositas juga tidak jauh berbeda yaitu 0,2323 dan 0,2067. Berdasarkan pada uji berpasangan Fst, populasi C. micropeltes di perairan TNS tidak berbeda nyata (P>0,05). Sehingga dapat disimpulkan bahwa C. micropeltes di perairan SNP populasi sungai Sebangau maupun Katingan tidak terdapat perbedaan keragaman genetik. Secara genetik, C. micropeltes di perairan SNP memiliki keanekaragaman relatif rendah dan kemampuan adaptasi rendah.
Dampak konsumsi ikan columbia catfish dari kolam bekas peleburan aki bekas terhadap penyakit degeneratif dan keamanan pangannya: The impact of consuming driftwood catfish from a former used battery smelting pond on degenerative diseases and its food safety Riani, Etty; Butet, Nurlisa Alias; Ansori , Mukhlas; Nandini, Annisa Putri; Krisanti , Majariana; Setiyadi, Benny; Cordova, Muhammad Reza
Jurnal Pengolahan Hasil Perikanan Indonesia Vol. 28 No. 4 (2025): Jurnal Pengolahan Hasil Perikanan Indonesia 28(4)
Publisher : Department of Aquatic Product Technology IPB University in collaboration with Masyarakat Pengolahan Hasil Perikanan Indonesia (MPHPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.17844/jphpi.v28i4.63319

Abstract

Desa Cinangka merupakan sentra daur ulang aki bekas tradisional ilegal di Bogor, namun sudah ditutup 15 tahun lalu. Tujuan penelitian, yaitu menentukan dampak konsumsi ikan columbia catfish yang dipelihara di kolam bekas peleburan aki bekas terhadap potensi penyakit degeneratif kanker dan non-kanker serta keamanan pangannya. Analisis yang dilakukan adalah kandungan logam berat pada daging ikan dan logam terlarut pada air dengan XRF dan AAS, faktor biokonsentrasi, risiko kesehatan akibat konsumsi ikan (kanker dan non-kanker) serta keamanan pangannya. Hasil penelitian menunjukkan ikan memiliki kemampuan untuk mengakumulasi logam berat pada tubuhnya. Daging ikan terkontaminasi Fe (537,53ppm), Cu (47,69ppm), Zn (942,53ppm), As (11,58ppm) dan Pb (13,07ppm). Air kolam tercemar oleh Fe, Zn, As dan Pb serta terkontaminasi Cu. Terjadi biokonsentrasi pada daging ikan, yakni Fe (658,33), Cu (4541,90), Zn (17357,83), As (9,94) dan Pb (142,53). Nilai Target Hazard Quotient (THQ) pada anak untuk semua logam berat >1, sedang pada dewasa yang mempunyai nilai THQ>1 adalah Zn, As, dan Pb. Nilai Hazard Index (HI)>1 pada anak dan dewasa sehingga konsumsi ikan berisiko memunculkan penyakit degeneratif non kanker. Konsumsi daging ikan berisiko memunculkan penyakit kanker, pada dewasa, yaitu rendah-sedang, sedangkan pada anak sedang-tinggi. Konsumsi harian ikan columbia catfish yang aman untuk anak 0,004 g/hari dan dewasa 0,015 g/hari. Batas konsumsi maksimum untuk anak 0,026 kg/minggu dan dewasa 0,091 kg/minggu. Anak-anak jauh lebih rentan dibanding dewasa.
Co-Authors . Erwyansyah . Zairion ACHMAD FARAJALLAH Agus Alim Hakim Ali Mashar Ansori , Mukhlas Arif Wibowo Arif Wibowo Ayu, Inna Puspa Azizah, Hikmatul Beginer Subhan Borbee, Erin Dedi Soedharma Dedy D. Solihin, Dedy D. Dian Rezki Muliani Dietriech Geoffrey Bengen Endah Sri Rahayu Etty Riani Eva Muhajirah Findra, Muhammad Nur Forcep Rio Indaryanto Fredinan Yulianda Gelis, Ester R. E. Gita Kusuma Rahayu Hawis H Madduppa Hemat Sirait Hikmatul Azizah Hikmatul Azizah Husain Latuconsina Inge Anggraeni Bela Putri Dewi Inggrid Wahyuni Eviasta Irianda, Nadya Jeny Isdradjad Setyobudiandi Isdradjad Setyobudiandi Kadarwan Soewardi Kadarwan Soewardi Kismanto Koroy Krisanti , Majariana Lane, Christopher Lella Herdiana Luky Adrianto Lusita Meilana M Mukhlis Kamal M Mukhlis Kamal M Mukhlis Kamal, M Mukhlis M. M. Kamal M. Mukhlis Kamal, M. Mukhlis M.M. Kamal Ma'mun Ansori Majariana Krisanti Mala Nurilmala Maya F Tamimi Mennofatria Boer Mohammad Mukhlis Kamal Muhammad Mukhlis Kamal Muhammad Reza Cordova, Muhammad Reza Mukhlis Kamal, Muhammad Nandini, Annisa Putri Nurasiah Riza Nurfajar, Nurfajar Nurfajrin Nisa Okta Simon Prasadi, Oto Rahayu, Endah Sri Rahmat Kurnia Ridwan Affandi RIDWAN AFFANDI Ridwan Affandi Rika Astuti Risa Tiuria Rudhy Gustiano Rudhy Gustiano Rugaya H. Serosero Ruzanna, Arina Sani, L. Mukhsin Iqbal Setiyadi, Benny Shofirma, Adela Sulistiono Syamsul Bachry TARUNI SRI PRAWAST MIEN KAOMINI ANY ARYANI DEDY DURYADI SOLIHIN TATI NURHAYATI Thomas Nugroho Wahyu Muzammil Yuang Dinni Aksari Yulia Fitrianingsih Yusli Wardiatno