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Keragaman Genetik Gen NADH Dehydrogenase Subunit 6 pada Monyet Hantu (Tarsius Sp.) (GENETIC DIVERSITY STUDY ON NADH DEHYDROGENASE SUBUNIT 6 GENE OF TARSIUS SP.) Rini Widayanti; Trini Susmiati; Wayan Tunas Artama
Jurnal Veteriner Vol 14 No 2 (2013)
Publisher : Faculty of Veterinary Medicine, Udayana University and Published in collaboration with the Indonesia Veterinarian Association

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (195.792 KB)

In conservation, identification of tarsier species based on morphological and molecular characters isrequired. However, to date the identification of animals is simply based on their morphological characterand vocalizations, while in fact it is difficult to identify each species of Tarsius sp morphologicaly. Thepurpose of this study is to obtain genetic markers that can be used to identify Tarsius sp on ND6 mitochondrialgenes and reveal affiliations and phylogenetic relationships Tarsius sp. with other members of primates.Samples were obtained from several original habitats of Tarsius sp. Three samples were taken from NorthSulawesi, one sample was collected from Central Sulawesi, three samples from Kalimantan and threesamples from South Sumatra. The isolated DNA is then used as a template for amplification of DNAfragments by PCR. Amplicon (PCR product) obtained 566 bp and 629 bp. Nucleotide sequencing resultsshows 513 nucleotides, the smallest genetic distances of 0%, the highest of 30.2% and average of 16.3%.Nucleotide and amino acid sequences of ND6 can be used as genetic markers to differenciate T. spectrum,T. dianae and T. bancanus but they fail to function as genetic markers to distinguish T. bancanus ofKalimantan and Sumatra origin.

STUDI KERAGAMAN GENETIK Tarsius sp. ASAL KALIMANTAN, SUMATERA, DAN SULAWESI BERDASARKAN SEKUEN GEN NADH DEHIDROGENASE SUB-UNIT 4L (ND4L) Rini Widayanti; Trini Susmiati
Jurnal Kedokteran Hewan Vol 6, No 2 (2012): September
Publisher : Universitas Syiah Kuala

Tujuan dari penelitian ini adalah mengaji keragaman genetik gen ND4L masing-masing spesies Tarsius yang dapat digunakan sebagai penanda genetik. Hasil polymerase chain reaction (PCR) gen ND4L menggunakan primer ND4LF dan ND4LR diperoleh 478 bp, setelah dilakukan sekuensing didapatkan sekuen gen ND4L sebesar 297 nt. Sekuen gen ND4L disejajarkan berganda dengan primata lain dari Genbank menggunakan Clustal W, dan kemudian keragaman genetik antar spesies dianalisis menggunakan program MEGA versi 5.0 (Nei dan Kumar, 2002). Di antara sampel Tarsius ditemukan satu situs nukleotida beragam, yaitu pada situs ke 162. Jarak genetik berdasarkan basa nukleotida ND4L dihitung menggunakan model dua parameter-Kimura menunjukkan paling kecil sebesar 0%, paling besar 0,3%, dan rata-rata 0,1 %. Pohon filogenetik menggunakan metode Neighbor joining tidak dapat membedakan antara Tarsius dari Sumatera, Kalimantan, dan Sulawesi, dan mengelompokkan Tarsius dalam subordo Strepshirrini.

ANALYSIS OF APOLIPOPROTEIN-B (APO-B) GENE IN ATHEROSCLEROSIS MICE GIVEN CURCUMINOID EXTRACT OF ZANTHORRIZA IN ORAL Trini Susmiati; Rini Widayanti; Aris Purwantoro; Claude Mona Airin; Sarmin Sarmin
Jurnal Kedokteran Hewan Vol 13, No 2 (2019): June
Publisher : Universitas Syiah Kuala

The aim of this study was to investigate the apolipoprotein-B (apo-B) gene in atherosclerosis mice which were orally given curcuminoid extract of Curcuma xanthorriza. A total number of 30 white mice were split into 6 groups, the first group considered as control (without any treatment), second group as atherogenic feed control, the third group as extract control, while the fourth, fifth and sixth groups as atherogenic feed and curcuminoid Curcuma xanthorriza extract group treated with 5 mg/mouse, 10 mg/mouse and 15 mg/ mouse, respectively for three months. The blood samples were taken from all six groups for the deoxyribonucleic acid (DNA) analysis using total DNA isolation, DNA amplification with polymerase chain reaction (PCR), and DNA sequencing. The data analysis showed that 374 bp nucleotide sequence gen of apo-B from Rattus norvegicus in groups B, C, D, E, and F did not cause any changes in genes. The analysis showed the sequence of apo-B Rattus norvegicus gene in the treatment group was apparently identical with that of Rattus norvegicus group A as the control group without treatment. As conclusion, the administration of curcuminoid zanthorrizza to atherosclerosis mice did not change the gene structure of apo-B 100.

ANALYSIS OF APOLIPOPROTEIN-B (APO-B) GENE IN ATHEROSCLEROSIS MICE GIVEN CURCUMINOID EXTRACT OF ZANTHORRIZA IN ORAL Susmiati, Trini; Widayanti, Rini; Purwantoro, Aris; Airin, Claude Mona; Sarmin, Sarmin
Jurnal Kedokteran Hewan Vol 13, No 2 (2019): June
Publisher : Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21157/j.ked.hewan.v13i2.10219

The aim of this study was to investigate the apolipoprotein-B (apo-B) gene in atherosclerosis mice which were orally given curcuminoid extract of Curcuma xanthorriza. A total number of 30 white mice were split into 6 groups, the first group considered as control (without any treatment), second group as atherogenic feed control, the third group as extract control, while the fourth, fifth and sixth groups as atherogenic feed and curcuminoid Curcuma xanthorriza extract group treated with 5 mg/mouse, 10 mg/mouse and 15 mg/ mouse, respectively for three months. The blood samples were taken from all six groups for the deoxyribonucleic acid (DNA) analysis using total DNA isolation, DNA amplification with polymerase chain reaction (PCR), and DNA sequencing. The data analysis showed that 374 bp nucleotide sequence gen of apo-B from Rattus norvegicus in groups B, C, D, E, and F did not cause any changes in genes. The analysis showed the sequence of apo-B Rattus norvegicus gene in the treatment group was apparently identical with that of Rattus norvegicus group A as the control group without treatment. As conclusion, the administration of curcuminoid zanthorrizza to atherosclerosis mice did not change the gene structure of apo-B 100.

STUDI KERAGAMAN GENETIK Tarsius sp. ASAL KALIMANTAN, SUMATERA, DAN SULAWESI BERDASARKAN SEKUEN GEN NADH DEHIDROGENASE SUB-UNIT 4L (ND4L) Widayanti, Rini; Susmiati, Trini
Jurnal Kedokteran Hewan Vol 6, No 2 (2012): September
Publisher : Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21157/j.ked.hewan.v6i2.339

Tujuan dari penelitian ini adalah mengaji keragaman genetik gen ND4L masing-masing spesies Tarsius yang dapat digunakan sebagaipenanda genetik. Hasil polymerase chain reaction (PCR) gen ND4L menggunakan primer ND4LF dan ND4LR diperoleh 478 bp, setelah dilakukan sekuensing didapatkan sekuen gen ND4L sebesar 297 nt. Sekuen gen ND4L disejajarkan berganda dengan primata lain dari Genbank menggunakan Clustal W, dan kemudian keragaman genetik antar spesies dianalisis menggunakan program MEGA versi 5.0 (Nei dan Kumar, 2002). Di antara sampel Tarsius ditemukan satu situs nukleotida beragam, yaitu pada situs ke 162. Jarak genetik berdasarkan basa nukleotida ND4L dihitung menggunakan model dua parameter-Kimura menunjukkan paling kecil sebesar 0%, paling besar 0,3%, dan rata-rata 0,1 %. Pohon filogenetik menggunakan metode Neighbor joining tidak dapat membedakan antara Tarsius dari Sumatera, Kalimantan, dan Sulawesi, dan mengelompokkan Tarsius dalam subordo Strepshirrini.

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