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Menara Perkebunan
Published by Pusat Penelitian Kelapa Sawit
ISSN : 01259318     EISSN : 18583768     DOI : -
Core Subject : Agriculture,
Agriculture, Biological Sciences & Forestry
Menara Perkebunan as a communication medium for research in estate crops published articles covering original research result on the pre- and post-harvest biotechnology of estate crops. The contents of the articles should be directed for solving the problems of production and/or processing of estate crops of smallholder, private plantations and state-owned estates, based on the three dedications of plantation. Analyses of innovative research methods and techniques in biotechnology, which are important for advancing agricultural research. Critical scientific reviews of research result in agricultural and estate biotechnology.
Arjuna Subject : -
Articles 541 Documents
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In silico study: molecular docking of SARS-Cov-2 endoribonuclease on active compounds of Gmelina arborea Roxb. bark Shobiroh Nuur'Alimah; Agnia Nurul Jannati; Laksmi Ambarsari; Syamsul Falah
Menara Perkebunan Vol. 92 No. 1 (2024): 92(1), 2024
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v92i1.561

Abstract

Infection by SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) triggers COVID-19 disease of the respiratory tract similar to pneumonia. The virus encodes four structural proteins and 16 non-structural proteins (nsp), one of which includes nsp15 or endoribonuclease (NendoU). NendoU plays an important role in viral replication and transcription and reduces the stimulation of immune cell responses. Active compounds in Gmelina arborea Roxb. bark have antioxidant properties that can inhibit the NendoU activity of SARS-CoV-2. This study aims to analyze the potential of compounds from Gmelina arborea Roxb. bark in inhibiting SARS-CoV-2 NendoU within in silico using the YASARA structure application. Balnophonin is the best test ligand based on binding ΔG value, dissociation constant (Kd), prediction of physicochemical characteristics, pharmacokinetics, and toxicity. Therefore, balanophonin can be developed as an effective alternative drug to inhibit SARS CoV-2 NendoU.
Production and profiling bioflavor compound from fermentation OPEFB hydrolysate and CPO by Lactobacillus sp. Firda Dimawarnita; Azzakiyya Salsabila Syifa Kusuma; Urip Perwitasari; Elok Zubaidah; Yora Faramitha; Pijar Religia; Ario Betha Juanssilfero
Menara Perkebunan Vol. 92 No. 1 (2024): 92(1), 2024
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v92i1.564

Abstract

Bioflavor is a type of natural flavor that is obtained from microbial metabolites during the process of fermentation. Most of the bacteria involved in food fermentation are lactic acid bacteria, including Lactobacillus sp. The optimal medium for Lactobacillus sp. growth is de Man Rogosa and Sharpe (MRS), but it is considered to be less economical. Therefore, alternative carbon and nitrogen sources are needed. This study aimed to determine the bioflavor produced in de Man Rogosa dan Sharpe Broth (MRSB) media that was substituted with Oil Palm Empty Fruit Bunch (OPEFB) hydrolysate and Crude Palm Oil (CPO) at concentrations of 5, 15, and 30%, respectively by using gas chromatography-mass spectrometry. The results showed that substituting MRSB with 15% CPO produced the best results for the growth of Lactobacillus sp. However, each medium produced different bioflavor compounds. In the control media (MRSB), the highest amount of bioflavor compound was 2,3-dihydro-3,5-dihydroxy-6-methyl -4H-Pyran-4-one (rose tea). In the OPEFB hydrolysate-substituted medium, it was benzene-acetaldehyde (sweet, bread, rose), in the CPO-substituted medium, it was furaneol (pineapple and strawberry) and pyrazine (nutty, roasted coffee).
The extract of Cavendish banana (Musa acuminata) peel as antioxidant and anti-aging agents in model yeast Schizosaccharomyces pombe Theresia Yolanda Avelina; Rika Indri Astuti; Wulan Tri Wahyuni
Menara Perkebunan Vol. 92 No. 1 (2024): 92(1), 2024
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v92i1.565

Abstract

Banana peel is one of the wastes that can be explored for various applications. Cavendish is among the most highly consumed bananas in the world, which implies a high amount of banana peel waste. Our study evaluated the potential of Cavendish banana peels as the source of antioxidant and anti-aging agents. Antioxidant was extracted using three different solvents, i.e., water, ethyl acetate, and methanol. Each extract was then assayed for antioxidant activity in vitro using a 1,1-diphenyl-2-picrylhydrazyl (DPPH) assay. The antioxidant and anti-aging activity of the extracts were further evaluated at the cellular level using the yeast Schizosaccharomyces pombe as a model. Our data indicated that the methanol extract of banana peel showed the highest antioxidant activity with an IC50 value of 253.8 µg mL-1 compared to ethyl acetate and water, yet it was considered weak. Interestingly, the methanol extract (600 ppm) showed antioxidant and anti-aging activities at cellular levels in yeast S. pombe. Therefore, this research reveals the potential for developing banana peel methanol extract as a component of pharmaceutical or cosmetic products with antioxidant and anti-aging properties.
Fabrication and characterization of biocomposite pellets from cassava starch and oil palm empty fruit bunch fibers Yora Faramitha; Firda Dimawarnita; Adi Cifriadi; Happy Widiastuti; Tjahjono Herawan
Menara Perkebunan Vol. 92 No. 1 (2024): 92(1), 2024
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v92i1.566

Abstract

Oil palm empty fruit bunches (OPEFB) are lignocellulosic biomass that can be used to produce a biocomposite as an alternative to substitute non-renewable materials, such as plastic. Generally, the production of biocomposites uses OPEFB, which has been processed into cellulose, microcrystalline cellulose, or nanocellulose and is mixed with starch. However, the OPEFB pretreatment into various types of cellulose requires a long process and many chemicals. The OPEFB pretreatment with less process, such as cutting to shorter fibers and without chemicals, was expected to shorten the process. This study aims to produce and evaluate the characteristics of biocomposite pellets from a combination of cassava starch and OPEFB fibers. Short OPEFB fibers (3-5 mm) with varying concentrations of 0, 5, 10, 15, and 20% were added to the cassava starch before mixing with other materials. The twin screw extruder used to produce biocomposite pellets was set at six temperature zones ranging from 85-140 °C and the screw speed in the range of 160-190 rpm. The results show that higher concentrations of OPEFB fibers produced darker pellets, which tended to be greyish. The biocomposite pellets had densities of 1.322-1.417 g cm-3. SEM results show some agglomerations on the surface of starch-OPEFB fibers biocomposite pellets. The water solubility of biocomposite pellets ranged from 32.97 – 36.44%. In conclusion, biocomposite pellets could be produced from a mixture of cassava starch and OPEFB fibers up to 20%. In its application for rigid packaging production, the biocomposite pellets’ performance could be improved by mixing them with recycled polypropylene.
Pengaruh matriks kapsul terhadap perkecambahan benih sintetik teh (Camellia sinensis L.) Effect of capsule matrix on germination of synthetic seeds of tea (Camellia sinensis L.) . SUMARYONO; Rizka T SAPTARI
Menara Perkebunan Vol. 83 No. 2: 83 (2), 2015
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v83i2.1

Abstract

Abstract         Synthetic seed technology has been developed to combine the practical use of ordinary seeds and clonal plant materials. Single somatic embryos of tea (Camellia sinensis L.) clone GMB 9 were encap-sulated using sodium alginate and CaCl2 at different concentrations to produce synthetic seeds.  Encapsulating matrices with and without somatic embryos were made of WP medium and 20 g/L sucrose with   1, 2 or 3%  sodium alginate and 50 or 100 mM CaCl2. Encapsulating matrices without somatic embryos were then tested its physical characteristics, whereas the capsules with somatic embryos were observed its germination rate and secondary embryo formation every week up to six weeks. The results showed that the concentrations of sodium alginate and CaCl2 were affected significantly the physical characteristics of encap-sulating matrix produced. The sufficient level of hardness and highest germination rate was obtained from 2% sodium alginate and 50 mM CaCl2. Sodium alginate at 1% or less produced soft, leaky and oval encapsulating matrices which were not suitable for synthetic seeds. Sodium alginate 3% and 100 mM CaCl2  produced rounded and very hard encapsulating matrices and inhibited the germination of somatic embryos. Germination rates of tea synthetic seeds and somatic embryos without encapsulation were 5 to 20% after six weeks. Abstrak         Teknologi benih sintetik dikembangkan untuk memadukan kepraktisan penggunaan benih biasa dengan bahan tanam klonal. Embrio somatik tunggal dari tanaman teh (Camellia sinensis L.) klon GMB 9 dienkapsulasi menggunakan natrium alginat   dan CaCl2 untuk membuat benih sintetik. Matriks kapsul dengan dan tanpa embrio somatik dibuat dari medium WP dengan sukrosa 20 g/L dicampur dengan natrium alginat 1, 2, atau 3% dan CaCl2 50  atau 100 mM.  Matriks  kapsul  tanpa embrio somatik kemudian diuji sifat fisiknya, sedangkan matriks kapsul dengan embrio somatik diamati daya kecambah dan pembentukan embrio somatik sekunder setiap minggu sampai dengan enam minggu. Hasil penelitian menunjukkan bahwa konsentrasi natrium alginat dan CaCl2 sangat berpengaruh terhadap sifat fisik matriks kapsul yang dihasilkan. Tingkat kekerasan yang memadai dan menghasilkan persentase perkecambahan yang tinggi diperoleh dengan alginat 2% dan CaCl2 50 mM. Natrium alginat pada konsentrasi 1% atau kurang menghasilkan matriks kapsul yang  lunak, mudah bocor dan berbentuk lonjong sehingga tidak sesuai untuk benih sintetik. Natrium alginat konsentrasi 3% pada larutan CaCl2 100 mM menghasilkan benih sintetik yang bulat, sangat keras dan menghambat perkecambahan embrio somatik teh.  Daya kecambah benih sintetik dan embrio somatik teh tanpa enkapsulasi berkisar  5 - 20% setelah enam minggu. 
Optimasi pengomposan tandan kosong kelapa sawit menggunakan dekomposer bakteri lignoselulolitik skala komersial Optimization of decomposition of empty fruit bunches oil palm using lignocellulolytic bacterialdecomposercomposting in commercial scale Happy WIDIASTUTI; Haryo Tejo PRAKOSO; . SUHARYANTO; . SISWANTO
Menara Perkebunan Vol. 83 No. 2: 83 (2), 2015
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v83i2.2

Abstract

AbstractDecomposition produces methane gas that contribute to greenhouse gas emissions. A research has been conducted to anticipate the occurrence of greenhouse gas emissions by composting of oil palm empty fruit bunches (EFB) waste with aerobic systems using lignocellulolytic bacterial decom-posers (LCBD) in a commercial scale. Two of the activities carried out areoptimization of anaerobic decomposition (pre-treatment) process and optimization of anaerobic-aerobic decompositionin a scale of 50 tons and 780 tons. The results showed that the best pre-treatment is decomposition using fungal decomposer (Acticomp) in an open area and covered with a plastic. In the anaerobic-aerobic decomposition system on scale of 50 tons, the best treatment is using fungal decomposer (Acticomp) and lcbd both for four weeks each while on a scale of 780 tons showed that EFB decomposition on combination of anaerobic and aerobic decom-position system within two months and two weeks respectively produce compost with the C/N ratio of 20.5. The properties of compost was perfectly mature and producing the highest number of green bean germinated seeds.AbstrakPengomposan atau dekomposisi secara anaerob menghasilkan gas metan yang dapat me-nyumbang emisi gas rumah kaca.Untuk antisipasi terjadinya emisi gas rumah kaca telah dilakukan penelitian pengomposan limbah tandan kosong kelapa sawit (TKKS) dengan sistem aerobik menggunakan dekomposer bakteri lignoselulolitik (DBLS)pada skala komersial. Dua kegiatan yang dilakukan adalah optimasi pengomposan anaerob (pre treatment) dan optimasi pengomposan anaerobik-aerobik masing-masing pada skala 50 ton dan 780 ton. Pada optimasi pengomposan dua faktor yang diuji adalah penggunaan dekomposer dan penutupan kompos sedangkan pada optimasi pengomposan anaerobik-aerobik diuji pengaruh penggunaan DBLS dan pengaruh penggunaan DBLS   dan   lama   periode  sistem  pengomposan. Hasil pengujian menunjukkan bahwa pre treatment terbaik adalah pengomposan dengan dekomposer jamur (Acticomp) di areal terbuka dan ditutup terpal. Perlakuan pada sistem anaerobik-aerobik skala 50 ton terbaik adalah pengomposan dengan dekomposer jamur (Acticomp) selama empat minggu dan dengan DBLS selama empat minggu sedangkan pada skala 780 ton menunjukkan bahwa pengomposan TKKS pada kombinasi antara pe-ngomposan dengan dekomposer jamur (Acticomp) dan DBLS masing-masing dalam waktu dua bulan dan dua minggu menghasilkan kompos TKKS dengan rasio C/N 20,5 dengan karakter matang sempurna dan mampu menghasilkan jumlah biji kacang hijau berkecambah tertinggi. 
Keefektifan beberapa teknik pengendalian untuk menekan intensitas penyakit busuk buah (Phytophthora palmivora) di lapang Several technique to control the intensity of cocoa pod rot disease (Pytophthora palmivora) in the field Abdul WAHAB; Muhammad TAUFIK; La Ode Santiaji BANDE; Irma KRESNAWATY
Menara Perkebunan Vol. 83 No. 2: 83 (2), 2015
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v83i2.3

Abstract

AbstractVarious factors causing the decreasing in the cocoa  production, and one of them is the infection of cocoa pod disease (CPD) caused by the pathogen of  Phytophthora palmivora. Plastic covered and coating with biokaolin can be used as techniques for the prevention of the diseases. The aim of  the research was to evaluate several techniques to control cocoa pod disease in order to reduce disease incidence, disease severity and yield loss of 100 seeds cocoa. This research was conducted in the village of Tokai, District of Poli-Polia, East Kolaka Southeast Sulawesi, from April to August 2013. The research was conducted according completely Randomized Block Design (RBD) with five treatments and four groups in order to obtain 20 experimental units. Each experimental unit consisted of  20 trees which each has five fruits so in total each unit consist of 100 fruit samples. The treatments tested were as follows; control (M0), biokaolin application every two weeks (M1), biokaolin application every four weeks (M2), plastic covered (M3), and mankozeb fungicide application every two weeks (M4). Variables observed in this study were the incidence of disease, severity of disease and yield loss was calculated by weighing the dry weight of 100 seeds. The results showed that the application of biokaolin every two weeks was more  effective to reduce disease incidence (26.12%) and disease severity (11.04%) while the average weight of the highest dry bean yield loss was on category of severe infection that is 74.96% with the lowest dry weight is 26.6 g in 100 seeds.  Abstrak   Berbagai faktor menjadi penyebab turunnya produksi buah kakao, salah satunya adanya infeksi penyakit busuk buah kakao (BBK) yang disebabkan oleh pathogen  Phytophthora palmivora. Teknik yang dapat dikembangkan untuk penanggulangan penyakit antara lain teknik penyelubungan dan pelapisan dengan biokaolin. Penelitian ini  ber-tujuan untuk mengevaluasi berbagai teknik pengendalian penyakit busuk buah kakao yang efektif menekan kejadian penyakit, keparahan penyakit dan besarnya kehilangan hasil berat 100 biji kering. Penelitian dilaksanakan di Desa Tokai, Kecamatan Poli-Polia, Kabupaten Kolaka Timur, Sulawesi Tenggara pada bulan April sampai Agustus 2013. Metode yang digunakan berdasar-kan Rancangan Acak Kelompok (RAK) dengan lima perlakuan dalam empat kelompok sehingga diperoleh 20 unit percobaan.  Setiap unit percobaan terdiri dari 20 pohon, dalam satu pohon terdiri dari lima sampel sehingga dalam 1 unit terdiri dari 100 sampel.  Perlakuan yang dicobakan adalah sebagai berikut; tanpa penyemprotan/penyelubungan (kontrol)  (M0), penyemprotan dengan biokaolin setiap dua minggu (M1), penyemprotan dengan biokaolin setiap empat minggu (M2), penyelubung-an dengan kantong plastik (M3), penyemprotan dengan fungisida mankozeb setiap dua minggu (M4). Parameter yang diamati  adalah kejadian penyakit, keparahan penyakit dan besarnya kehilangan hasil dihitung dengan menimbang berat 100 biji kering. Hasil penelitian menunjukkan bahwa teknik pengendalian penyakit busuk buah dengan aplikasi biokaolin setiap dua minggu rata-rata lebih efektif dalam menekan kejadian   penyakit yaitu (26,12%)  dan  keparahan  penyakit  (11,04%), sedangkan rata-rata besarnya kehilanganhasil berat biji kering tertinggi terlihat pada kategori infeksi berat yaitu 74,96%  dengan berat kering terendah yaitu 26,6 g dalam100 biji.
Ekspresi dan kloning gen penyandi ADP-Glucose Phyrophosphorylase dari tanaman sagu (Metroxylon sagu Rottb.) Expression and cloning of gene encoding ADP-Glucose Phyrophosphorylase from sago palm (Metroxylon sagu Rottb.) Asmini BUDIANI1; Riza Arief PUTRANTO; Hayati MINARSIH; Imron RIYADI; . SUMARYONO; Barahima ABBAS
Menara Perkebunan Vol. 83 No. 2: 83 (2), 2015
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v83i2.4

Abstract

AbstractSago palm (Metroxylon sagu Rottb.) is a potential food and energy resources becouse it is the highest starch producing plant.  Breeding of sago palm should be directed to produce elite genotype with superior characters such as high starch content, wider pith diameter, without spine and high starch quality. However, research on sago palm in Indonesia so far is limited espescially in the field of cultivation and breeding, and attempt to produce such elite would take long time. Availability of molecular marker for starch content would be beneficial to shorten the length period of breeding. ADP-Glucose Phyrophosphorylase is one of the important enzymes in starch biosynthesis. Therefore its gene is an interesting subject in order to develope molecular marker of high starch content.  This research was aimed to study the expression of gene encoding AGP in the sago palm with high starch content versus low starch content, and to clone the full cds of the gene. RNA was isolated from leaf and pith of both palms. Exspression analysis and amplify-cation of full cds were conducted by Reverse Transcryptase-Polymerase Chain Reaction (RT-PCR) using specific primers. The results showed that sago palm with higher starch content expressed AGP higher than that of sago palm with lower  starch content. Expression of AGP in the full developing leaf was higher than in the young leaf, and there was no expression detected in the pith. The full cds of AGP was successfully amplified and cloned. Even though the DNA sequence showed high homology with DNA sequence of the same gene that has been deposited in GenBank, there were differences in severall nucleotide including that in the active domain of the enzyme.AbstrakTanaman sagu merupakan sumber pangan dan energi yang sangat potensial untuk dikembangkan karena merupakan tanaman penghasil karbihidrat tertinggi. Pemuliaan tanaman sagu mestinya diarah-kan untuk menghasilkan bibit sagu yang selain memiliki rendemen pati tinggi, juga memiliki diameter empulur besar, tidak berduri dan memiliki cita rasa pati yang enak. Namun, sampai saat ini riset mengenai sagu di Indonesia masih sangat terbatas, sehingga pemuliaan sagu untuk menghasilkan bibit unggul demikian akan memerlukan waktu lama. Ketersediaan penanda rendemen pati akan sangat membantu mempercepat pemuliaan tanaman tersebut. ADP-Glucose Pyrophosphorylase adalah salah satu enzim yang berperan penting dalam biosintesis pati, sehingga gene penyandinya merupakan subjek yang menarik dalam pengembangan marka kandungan pati tinggi.  Sebagai bagian dari upaya untuk mendapat-kan penanda rendemen pati tinggi pada tanaman sagu, penelitian ini bertujuan untuk mempelajari ekspresi gen penyandi AGP. RNA diisolasi dari daun tanaman sagu rendemen pati rendah dan tanaman sagu rendemen pati tinggi. Perbedaan tingkat ekspresi gen penyandi AGP dari tanaman sagu rendemen pati tinggi vs rendemen pati rendah, dianalisis dengan teknik Reverse-Transcryptase PCR menggunakan primer spesifik. Hasil penelitian menunjukkan bahwa tanaman sagu rendemen pati tinggi mengekspresikan AGP lebih tinggi dibandingkan dengan tanaman sagu rendemen pati rendah. Ekspresi gen tersebut pada daun tua (full developing leaf) lebih tinggi di-bandingkan dengan pada daun muda, dan pada empulur tidak dideteksi ekspresi gen tersebut. Daerah penyandi lengkap AGP subunit kecil telah diklon. Meskipun memiliki homologi yang tinggi dengan sekuen DNA gen yang sama yang telah dideposit pada  GenBank,  namun terdapat perbedaan beberapa nukleotida termasuk pada daerah domain aktif dari enzim tersebut. 
Evaluation of eleven reference genes for Reverse Transcriptase Quantitative PCR of rubber tree under water deficit Evaluasi sebelas gen referensi untuk Reverse Transcriptase Quantitative PCR pada tanaman karet tercekam kekeringan Riza Arief PUTRANTO; Julie LECLERCQ; Pascal MONTORO
Menara Perkebunan Vol. 83 No. 2: 83 (2), 2015
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v83i2.5

Abstract

AbstrakReverse Transcriptase Quantitative PCR (RT-qPCR) merupakan teknik yang sangat ampuh untuk mendeteksi jumlah mRNA yang rendah dalam sel tanaman. Pengukuran akumulasi transkrip tersebut relatif terhadap kontrol ekspresi seperti gen-gen housekeeping. Keandalan teknik RT-qPCR ber-gantung pada pemilihan kontrol internal yang disebut pula gen referensi. Hal tersebut menjadi alasan kenapa validasi gen referensi disarankan untuk setiap set sampel cDNAs yang akan diguna-kan pada eksperimen RT-qPCR baru. Penelitian ini bertujuan untuk menganalisis stabilitas sebelas gen-gen housekeeping terpilih pada tiga organ Hevea brasiliensis (daun, kulit batang dan akar) tercekam kekeringan moderat selama 15 hari. RNA total diisolasi dari 18 sampel yang terdiri dari tanaman kontrol dan tercekam kekeringan pada hari ke-0 (D0), ke-5 (D5) dan ke-15 (D15). Kualitas cDNA yang disintesis divalidasi dengan amplifikasi PCR menggunakan primer HbActin. Kesebelas pasangan primer penyandi gen-gen housekeeping pada Hevea (HbActin, HbelF1Aa, HbUBC4, HbUBC2b, HbYLS8, HbRH2b, HbRH8, HbUBC2a, HbαTub, Hb40S dan HbUBI) divalidasi dengan amplifikasi PCR. Nilai Crossing-point (Cp) yang diukur dengan metode derivatif kedua pasca analisis RT-qPCR mengungkapkan nilai rerata Cp yang lebih tinggi secara signifikan untuk kesebelas gen housekeeping pada titik sampling D5 dibanding D0 dan D15. Studi ini menyarankan bahwa metode perhitungan koefisien keragaman (CV) sederhana dapat digunakan untuk menentu-kan peringkat gen referensi pada tanaman karet berdasarkan ekspresinya yang stabil. Lima gen housekeeping (HbRH2b, HbRH8, HbUBC4, HbαTUB dan HbActin) dapat digunakan sebagai gen referensi untuk analisis RT-qPCR pada Hevea brasiliensis yang tercekam kekeringan moderat. Gen HbRH2b memiliki ekspresi paling stabil dibanding yang lain.AbstractReverse Transcriptase Quantitative PCR (RT-qPCR) is a powerful technique in order to detect low abundance of mRNA in the plant cell. The measurement of transcript abundance is relative to the control of expression such as housekeeping genes. Therefore, the reliability of RT-qPCR depends essentially to the choice of these internal controls also called reference genes. That is the reason why a prior validation of reference genes is suggested for every set of cDNA samples used in a new RT-qPCR experiment. This study aimed to analyze the stability of eleven selected house-keeping genes in three Hevea brasiliensis tissues (leaf, bark and root) under15 days of moderate water deficit. Total RNA was isolated from 18 samples consisting of control and stressed-plants collected at day-0 (D0), day-5 (D5) and day-15 (D15).The quality of cDNA synthesized was examined by PCR using HbActin primer. The eleventh primers encoding Hevea housekeeping genes (HbActin, HbelF1Aa, HbUBC4, HbUBC2b, HbYLS8, HbRH2b, HbRH8, HbUBC2a, HbαTub, Hb40S and HbUBI) were validated using PCR amplification. The Crossing-point (Cp) values were measured using a second derivative method after RT-qPCR analysis revealing a significantly higher Cp mean values for 11 housekeeping genes at D5 compared to D0 and D15 sampling points. This study suggests that a simple coefficient of variation (CV) method can be used to rank Hevea reference genes based on its stable expression. Five housekeeping genes (HbRH2b, HbRH8, HbUBC4, HbαTUB and HbActin) can be used for RT-qPCR analysis in Hevea brasiliensis under moderate water deficit. The HbRH2b gene was the most stable among others.
Immuno-chemiluminescense detection of allergenic proteins from rubber gloves and natural rubber latex Deteksi protein allergen secara imunokimia dari sarung tangan dan lateks karet alam . Siswanto
Menara Perkebunan Vol. 83 No. 1: 83 (1), 2015
Publisher : INDONESIAN OIL PALM RESEARCH INSTITUTE

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22302/iribb.jur.mp.v83i1.10

Abstract

AbstrakLateks alam maupun produk jadi yang berasal dari karet alam diketahui mengandung protein alergen. Namun demikian identifikasi jenis protein allergen belum banyak dilaporkan. Penelitian ini bertujuan untuk mendeteksi protein alergen dari sarung tangan dan lateks karet alam menggunakan metode immuno-chemiluminescense. Protein di-ekstrak dari tiga fraksi sentrifugasi lateks (serum B, serum C dan partikel karet) serta tujuh jenis sarung tangan komersial, kemudian dipisahkan berdasarkan berat molekulnya melalui Gel elektroforesis 1-D (SDS PAGE) dan 2-D. Selanjutnya untuk deteksi protein allergen secara immuno-chemiluminescense dilaku-kan imunobloting menggunakan serum Ig_E tiga pasien yang terbukti positif alergi terhadap protein asal sarung tangan lateks, kemudian diwarnai dengan Sypro Ruby protein blot fluorescence. Hasil penelitian menunjukkan bahwa  berdasarkan hasil analisis Western blot one-DE sampel protein lateks menggunakan serum tiga orang tenaga medis yang terbukti positif alergi terhadap protein lateks, maka dapat diidentifikasi 14 jenis protein alergen pada sarung tangan lateks, empat diantaranya merupakan pita major yaitu Berat Molekul (BM) 35, 38, 46 dan 56 kDa. Protein allergen pada sarung tangan tersebut kemungkinan berasal dari bagian C-serum terutama protein  BM 46 dan 56 kDa ataupun campuran antara C-serum dan B-serum dari lateks karet alam. Hal ini dibuktikan bahwa dari sampel C-serum lateks dapat teridentifikasi 12 protein alergen,  empat diantaranya merupakan pita major yaitu BM 42, 46, 51 dan        56 kDa. Sedangkan dari sampel B-serum teridenti-fikasi tiga pita major dengan BM 14, 16 and 51 kDa. Hasil analisis Western blot 2-DE ekstrak protein sarung tangan menggunakan serum tiga orang tenaga medis yang terbukti positif alergi terhadap protein lateks, maka dapat diidentifikasi 12 - 13 spot protein alergen dengan pI at 4.0 to 7.0 dan yang paling dominan adalah dengan BM 23, 35, 38, 42, 45, 46 kDa.Abstract  Natural rubber latex and finished products derived from natural rubber is known to contain allergenic proteins. Nevertheless identification of allergenic protein has not been widely reported. This study aims to detect the protein allergens from the glove of hands and natural rubber latex using immuno-chemiluminescense. Proteins extracted from the latex centrifugation three fractions (serum B, serum C and rubber particles) as well as seven types of commercial gloves, then separated by molecular weight through 1-D gel electrophoresis (SDS PAGE) and 2-D. Furthermore, for the detection of allergen proteins in immuno-chemiluminescense performed immunoblotting using the serum IgE three patients who tested positive for allergy to latex gloves native protein, and then stained with fluorescence Sypro Ruby protein blot. The results showed that based on the results of Western blot analysis of one-DE latex proteins using serum samples three medical personnels who tested positive for allergy to latex proteins, we can identify 14 types of protein allergens in latex gloves, four of which are major bands that having Molecular Weight (MW) 35, 38, 46 and 56 kDa. Protein allergen on the gloves are likely to come from the C-serum protein mainly MW 46 and 56 kDa, or a mixture of C-serum and B-serum of natural rubber latex. It was proved that from C-serum samples could be identified as many as 12 protein latex allergens, four of which were major bands that MW 42, 46, 51 and 56 kDa. While the B-serum samples identified three major bands with MW 14, 16 and 51 kDa. Results of Western blot analysis of 2-DE protein extracts glove using the serum three medical personnel who tested positive for allergy to latex proteins, it could be identified 12-13 allergen protein spot with pI at 4.0 to 7.0 and most dominant is the MW 23, 35, 38, 42, 45, 46kDa.

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