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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
Arjuna Subject : -
Articles 1,091 Documents
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Population Estimate of Long-Tailed Macaques (Macaca fascicularis) on Tinjil Island Dyah Perwitasari-Farajallah; Entang Iskandar; Hana Intishar Sawitri; Tommy Langgeng Abimanyu; Vallen Sakti Maulana; Annisa Devi Rachmawati; Indra Purnama; Huda S. Darusman
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.193-197

Abstract

Tinjil Island was established as a Natural Habitat Breeding Facility for long-tailed macaques (Macaca fascicularis) in 1997. Between February 1998 and January 2007, 603 (61 males and 542 females) simian retrovirus (SRV) free long-tailed macaques were introduced to the island on the south coast of West Java and function as a primate resource and conservation program. To date, 3256 progenies have been harvested and used as the animal model. Therefore, it is necessary to survey the current population of the long-tailed macaques to evaluate whether the population is still under the island’s carrying capacity. This research aims to identify the population estimate of long-tailed macaques currently occupying the island. The observation was conducted in July 2021 using line transect sampling starting from 07.00 AM and 01.00 PM. Twelve observations were conducted during the study using CD and ES transects. CD (Chuck Darsono) and ES (Emil Salim) are the two longest trails on the island and represent the names of the people who initiated the captive breeding of Tinjil Island. The estimated group density of the long-tailed macaques on Tinjil Island is 13.46 groups/km2, while the estimated population density is 111.04 individuals/km2. The population estimated on the island is 627.38±23.53 individuals. The number indicates that the population is still under carrying capacity.
Evaluation of Nutrient Content and Antioxidant Activity of Wood Ear Mushroom (Auricularia auricula-Judae) in the Addition of Reeds (Imperata cylindrica (L.) Beauv) as a Cultivation Medium Sotya Rawiningtyas; Adi Setyo Purnomo; Sri Fatmawati
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.224-231

Abstract

The nutritional content of mushrooms depends on the type of substrate in the growing medium. Lignocellulose is one of the substrates used for fungal growth media. In this study, the effect of adding dried reeds (Imperata cylindrical (L.) Beauv) on Sengon (Paraserianthes falcataria (L.) Nielsen) sawdust-based media was investigated for wood ear mushroom (Auricularia auricula-Judae) fruiting body. Reeds have been added to Sengon sawdust as wood ear mushroom cultivated medium with variations of S0, S1, S2, S3, and S4 (0%, 25%, 50%, 75%, and 100% of reeds, respectively). S0 was designed as the negative control and S4 as the positive control. The evaluation was carried out against the C/N ratio, yield, biological efficiency (BE), nutritional content, and antioxidant activity of fruiting body mushrooms after 10, 20, and 30 days planted. The highest C/N ratio and BE were obtained from the S1 medium. The lowest moisture content was obtained from the S0 medium. The lowest fat content was obtained from the S4 medium. The best result of nutritional analysis includes the following; the highest total carbohydrate, ash, crude fiber, and crude protein content was obtained from S3, S4, S3, and S0. Furthermore, the best result of antioxidant activity against ABTS and DPPH was obtained at methanol extract of fruiting body mushrooms from S1 medium, compared with ascorbic acid as the positive control. This study has shown that adding reeds to the cultivated medium influences the growth, nutritional content, and antioxidant activity of wood ear mushrooms.
A Study of Chemical Constituents in Platinum Fast-Grown Teak Wood (Tectona grandis) with Age Differences Using Py-GCMS Coupled with Interdependence Multivariate Analysis Maya Ismayati; Dwi Ajias Pramasari; Wahyu Dwianto; Danang Sudarwoko Adi; Nyndia Tri Muliawati; Ratih Damayanti; Narita Ayu Putri Pramesti; Syahrul Ramadhan; Ari Hardianto; Nadia Nuraniya Kamaluddin
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.380-391

Abstract

Pyrolysis gas chromatography-mass spectrometry (Py-GCMS) is a simple, rapid, and reliable analytical technique to assay lignocellulose biomass. This study aims to analyze the chemical content of various ages of platinum fast-grown teak wood using PyGCMS coupled with interdependence multivariate analysis. Fifty-eight peaks were shown in the pyrogram originating from carbohydrates, lignin, and extractive derivatives. Along with age, platinum fast-grown teak wood showed higher carbohydrate derivatives in heartwood than sapwood. Compared to teak wood grown in conventional (between 36.72-45.69%), platinum fast-grown teak wood has a higher content of carbohydrates (42.82-48.04%). A substantial amount of G-unit lignin was detected in the sapwood, while the S-unit lignin dominated the heartwood. The extractive content of 10-years-old teak wood heartwood was 4.82%, higher than 10- and 20-years-old heartwood from conventional wood (2.23% and 8.88%, respectively). Multivariate analysis of the chemical compound showed that Py-GCMS could be utilized to classify platinum fast-grown and conventional teak wood. 2-methyl anthraquinone (MAQ) content of 10-year-old fast-grown teak wood was 2.5 times higher than 20-year-old conventional teak wood. Based on the study, platinum fast-grown teak wood is promising as alternative wood material to fulfill the market demand for conventional teak wood.
Growth of Red Amaranth (Amaranthus cruentus L.) Cultivated on Soil-Based Substrate Amended with a Residue of the Black Soldier Fly Larvae Containing Heavy Metals Hana Haruna Putri; Benyamin Lakitan; Zaidan Panji Negara; Strayker Ali Muda
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.302-312

Abstract

Red amaranth (Amaranthus cruentus L.) is a fast-growing and nutritious leafy vegetable. The seed population density needs to be known appropriately to obtain the optimal yield of marketable sizes plants. The residue of black soldier fly (BSF) larvae culture has been recognized as a potential source of nutrients for cultivating red spinach plants. This study was designed to search for the best combination of plant population density and BSF concentration to obtain the optimal marketable yield of the red amaranth plant. In addition, an accurate leaf area estimation of the red amaranth plant was also developed using leaf dimensions as a predictor with several regression models. Two experiments were conducted. Firstly, the BSF residue was applied at a high rate (up to 50%) using a floating culture system. Application of the residue at the rate of 30% and higher significantly inhibited the growth of the red amaranth. Secondly, the application rate was reduced to 10% and 20%, and the experiment was conducted using the conventional cultivation system. Results indicated that the optimum application rate of the BSF residue was 10% for enhancing growth. Application of seed density at 30 mg/dm2 produced an optimum marketable yield of the red amaranth since a higher population density causes plant-plant competition. Thus, creating high size variability within the population or reducing the average size of the harvested plants. Lastly, the leaf area of red amaranth can be accurately estimated using the leaf length x width (LW) as a predictor using the zero-intercept linear regression model.
Revisit Study of Freshwater Sponges Eunapius carteri (Bowerbank, 1863) and a New Record of Oncosclera asiatica Manconi and Ruengsawang, 2012 (Porifera: Spongillida) in Porong River, East Java, Indonesia Setiawan Edwin; Yanuar Ahmad; Michael Einstein Hermanto; Riani Catur; Prayogo Fitra Adi; Budiharjo Anto
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.232-245

Abstract

Distribution of freshwater sponges (Porifera: Spongillida) in Indonesia is currently insufficiently reported and underestimated compared to marine sponges. An inventory study on freshwater sponges in East Java after Indonesian independence in 1945 is yet to be carried out. For this reason, we reported new records of two freshwater species, Eunapius carteri (Bowerbank, 1863) and Oncosclera asiatica (Manconi and Ruengsawang, 2012) in Porong river, East Java, Indonesia. E. carteri species was originally described in Mumbai, India and its presence in Java was reported in 1927, 1928, and 1930. DNA barcoding and molecular phylogenetic analysis using mitochondrial COI was able to successfully identify our specimens as E. carteri, while analysis using the nuclear ITS markers placed our samples with other Eunapius species. Furthermore, in this study we report for the first time in East Java, Indonesia, the presence of O. asiatica. The O. asiatica species was originally described from Pong River located in Lower Mekong, Thailand. We concluded our specimens to be O. asiatica based on the morphology, skeleton, and spicule composition of the specimens that were similar to the samples recorded in Thailand. We were only successful in obtaining the COI sequence of O. asiatica. Furthermore, our samples did not group to the publicly available sequence of its congener, namely Oncosclera sp. Therefore, further molecular taxonomy and morphological analysis is needed to explore the diversity of freshwater sponges in general and to conduct species delimitation of E. carteri and O. asiatica in Java, Indonesia, and Asia
Genotype-Environment Interaction and Yield Stability of Upland Rice in Intercropping Cultivation Aris Hairmansis; Supartopo; Yullianida; Nafisah; Rini Hermanasari; Angelita Puji Lestari; Suwarno
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.292-301

Abstract

Rice cultivation as intercropping in plantations is a potential approach to increase land resource efficiency. Implementation of rice intercropping would require genotypes adapted to shaded environments. This study aimed to clarify the interaction of genotype and environment on agronomic characteristics of upland rice grown under intercropping system and to identify suitable genotypes for this particular cropping system. Multi-location trials evaluated twelve upland rice lines and two check varieties in eight upland sites during the wet season (WS) 2015-2016. Rice was grown as intercropping in six sites and as monoculture in two sites. Rice as intercrop was cultivated in between plantations of tall coconut, rambutan, teak, albizia, and natural rubber. The result of this study revealed that the interaction between genotype and environment was significant for all agronomic characteristics. The genotype B12056F-TB-1-29-1 was the best performer when grown as intercropping in Subang and Indramayu, with shading intensities of 65% and 44%, respectively. The genotype B11908F-TB-3-WN-1 was the best yielder in Cianjur and Lampung Tengah, which had 37% and 54% shading intensity, respectively. The genotype B12825E-TB-2-4 was the best performer in Lampung Timur with shading intensity of 45%, while Jatiluhur was the best genotype in Banyumas with shading intensity of 82%. The yield of rice genotypes grown as monocultures was higher than as intercropping. Among the genotypes, B12056F-TB-1-29-1 showed the highest yield across sites. Stable and high-yield genotypes identified from this study are expected to be adopted by farmers for intercropping rice cultivation.
The Changes in Seed Germination Capacity, Seedling Growth, and Leaf Morphology of Ficus variegata Blume Influenced by Gamma-Ray Irradiation Muhammad Zanzibar; Agus Astho Pramono; Yulianti; Kurniawati Purwaka Putri; Dede J. Sudrajat; Naning Yuniarti; Nina Mindawati; Dida Syamsuwida; Danu; Ratna Uli Damayati Sianturi; Y. M.M. Anita Nugraheni; Nurhasybi; Junaedi Ahmad
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.336-346

Abstract

Gamma irradiation treatments have commonly been applied to induce variation in plant genetic improvement programs. The improvement of nyawai (Ficus variegata Blume) is urgently needed mainly to break the seed dormancy, increase seedling growth, and induce variation for selecting desired traits. This research aimed to assess the effect of gamma irradiation doses on seed germination, seedling growth, and leaf morphology of Ficus variegate Blume. This experiment's irradiation doses ranged from 5-240 Gy and were applied to seeds with varying levels of vigor based on the artificial seed aging process. The data displayed a positive relationship between low doses of gamma irradiation and the nyawai seed's endurance. Low irradiation doses, 5 to 30 Gy, are deemed capable of promoting seedling development, leaf retention, and diversity in leaf structure. The higher irradiation doses than 30 Gy decreased seedling growth, leaf number, and seedling survival. In addition, these doses also affect some morphological changes, including seedling height and leaf length and width.
Increasing The Stocking Density of Grouper Nurseries for Aquabusiness Efficiency in Recirculating Aquaculture System (RAS) with Bioremediation Belinda Astari; Tatag Budiardi; Suko Ismi; Irzal Effendi; Yani Hadiroseyani
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.198-206

Abstract

Water quality improvement was carried out by means of recirculation and bioremediation systems in grouper nurseries with high stocking density, thereby increasing production performance. The goal of this study was to evaluate the effectiveness of aquabusiness by analyzing the rise in grouper nursery stocking density using RAS and bioremediation systems. The test parameters consist of production performance, blood glucose levels, physic-chemistry-biology of water quality, and business efficiency based on productivity and business analysis. Treatment of 1,000 fish/m3 increased survival, blood glucose levels, total bacteria, Vibrio spp., ammonia, nitrite, and all productivity parameters. But it lowers all growth parameters, pH, and dissolved oxygen values. The recirculation system with bioremediation at up to 1,000 fish/m3 of stocking boosted the profit by 2.64 times. and 14.97% more efficient than 500 fish/m3 which could not be matched by the high production performance.
In Silico Analysis of Gene Expression Location and Single Nucleotide Polymorphisms (SNPs) of The Glucagon Like Peptide 1 Receptor (GLP-1R) Rita Maliza; Putra Santoso; Bramadi Arya; Alimuddin Tofrizal; Rarastoeti Pratiwi
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.281-291

Abstract

Association studies of SNPs have become very important in determining how genetic variants are linked to complex diseases, quantitative traits, and physiological responses. Genetic polymorphisms in the GLP-1R gene have potentially decreased protein stability and are associated with many diseases, especially diabetes and obesity. This study aimed to screen the expression and investigate the genetic polymorphism of the GLP-1R by using several beneficial bioinformatics tools. We observed database Ensembl, GTEx portal, and KEGG to identify the structure, expression, and molecular pathway of GLP-1R. In silico computational methods (SIFT, PolyPhen v2, PROVEAN, and PhD-SNP) were used to identify nsSNPs of the GLP-1R that potentially influence protein structure and function. I-Mutant was used to investigate possibly damaging nsSNPs, while GeneMANIA was used to investigate GLP-1R gene-gene interactions. GLP-1R is localized on chromosome 6p21, contains 13 exons, and has the regulation variant (CTCF, promotor, enhancer, and promotor flank region). GLP-1R is highly expressed in the pancreas to stimulate glucose-dependent insulin secretion and suppress glucagon secretion. Seven nsSNPs of the GLP-1R gene were found to be potentially deleterious: rs10305421, rs201672448, rs10305492, rs2295006, rs6923761, rs1042044, rs140642887, and rs10305510. I-Mutant server showed that nsSNPs rs140642887 was unstable, decreased GLP-1R protein stability, and impaired other genes' interaction and function (SP1, SP3, GNAS, and GCG). This study is the first in silico analysis of the polymorphic GLP-1R gene, and will serve as a great resource for developing precision medications to treat diseases associated with these polymorphisms.
Reef Fish Biodiversity at Different Depths in Tunda Island, Banten Province, Indonesia Mujiyanto Mujiyanto; Amran Ronny Syam; Sasanti R. Suharti; Yayuk Sugianti; Saras Sharma
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.256-270

Abstract

Reef composition and diversity of coral reef fishes play an essential role in the ecosystem. The reef fish diversity is a crucial indicator of the health level of coral reef ecosystems. The benefit of fish diversity in coral reef ecosystems is to describe ecological services. This research intended to determine reef fish diversity among stations at different depths, consisting of shallow water and reef slope. Research sampling was done in July 2018 and July 2019 in Tunda Island waters at eight stations billowing the coral distribution pattern. Collected data of reef fishes were by using Underwater Visual Census (UVC) on Belt Transects Method at 250 m2 transect area (50 meters of length and 2.5 m on either side). The result showed 69 reef fishes in shallow water and 67 species on the reef slope. The total of fish species ware from 13 families consisting of Acanthuridae, Apogonidae, Blenniidae, Chaetodontidae, Ephippidae, Haemulidae, Labridae, Lutjanidae, Nemipteridae, Pomacentridae, Pseudochromidae, Scaridae and Serranidae. The community services structure of coral reef fishes is included in the moderate community stability category with an H’ value ranging from 1.19-1.60 in shallow water and 1.23-1.44 at reef slope, respectively. Diversity in coral reef fish communities might be associated with species' spatial distribution over the reef habitat's physical structure, but these patterns could be highly scale-dependent. In general, it could be said that the higher the coral reef diversity, the higher the reef fish diversity.

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