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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
Arjuna Subject : -
Articles 1,091 Documents
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Phylogenetic Analysis of Cyclocheilichthys apogon and Cyclocheilichthys armatus (Fish: Cyprinidae) from West Sumatra Dewi Imelda Roesma; Djong Hon Tjong; Syaifullah; Dyta Rabbani Aidil
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.895-906

Abstract

Cyclocheilichthys apogon (Beardless Barb fish) and Cyclocheilichthys armatus (Hihgfin Barb fish) in West Sumatra is known by the local name Turiak and Catua fish, respectively, are economically important species. Reducing populations and limited biological information about these fishes make their genetic diversity and phylogenetic relationships crucial. The genetic variation was investigated by analyzing the sequencing of a part of mitochondrial DNA Cytochrome b (Cyt b) and Cytochrome oxidase-I (COI) genes of 23 individuals collected from West Sumatra populations. Phylogenetic analysis revealed the monophyletic lineage of the Cyclocheilichthys group and supported Anematichthys as the synonym of Cyclocheilichthys. C. armatus was closely related to C. janthochir and separated from C. apogon with sequences divergence were 12.7-14.0% (Cyt b) and 9.4%-10.0% (COI). C. apogon and C. armatus have low haplotype diversity and genetic diversity, respectively. Genetic diversity within and among populations with sequences divergence was 0.0-0.8% (Cyt b) and 0.0%-0.7% (COI), respectively. The low-level diversity may signify a possibility of gene flow within and among populations. The current data suggests all populations as a single stock unit. Present genetic information is important to establishing effective population management, conservation, and breeding strategies for Turiak and Catua fish.
Distribution Analysis of Asiatic Palm Weevil Rhynchophorus vulneratus Panzer (Coleoptera: Dryphthoridae) using GIS Technique and the Interaction with Coconut Beetle Oryctes rhinoceros L. (Coleoptera: Scarabaeidae) Hanindyo Adi; R.C. Hidayat Soesilohadi; Andhika Puspito Nugroho; Suwarno Hadisusanto; Sudaryatno; Abdulrahman Saad Aldawood; Sukirno Sukirno
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.918-926

Abstract

Asiatic palm weevil Rhynchophorus vulneratus Panzer is one of the key pests of coconut in Indonesia. Information regarding the spatial distribution of R. vulneratus is needed to support Integrated Pest Management and can be analyzed using Geographic Information System (GIS). Initial studies on the interaction between R. vulneratus and Oryctes rhinoceros were also studied in this study. This research aimed to analyze the spatial distribution of R. vulneratus using GIS and its interaction with the Coconut beetle Oryctes rhinoceros. The research was conducted in Yogyakarta as a habitat model (0-1,000 masl). R. vulneratus and O. rhinoceros were catched by installing aggregation pheromone traps hanging to coconut plants at 1.7 m above ground. The research was conducted during the rainy and dry seasons. The spatial distribution of R. vulneratus was analyzed by IDW interpolation using QGIS 3.22, whereas its interaction with O. rhinoceros was analyzed by the Pearson correlation test using SPSS 22. The results showed low number of R. vulneratus captured in the Yogyakarta area during the rainy season at 0-1,000 masl. However, the number of R. vulneratus during the dry season has increased, and the distribution rate was dominated by medium to very high levels, especially at an altitude of 0-300 masl. The study also showed that the number of R. vulneratus was not influenced by the number of O. rhinoceros, which suggested that the abundance of O. rhinoceros cannot accurately predict the abundance of R. vulneratus.
Genetic Diversity of Gracilaria spp. in the Intertidal Zone on the South Coast of Yogyakarta, Indonesia Based on DNA Barcoding with rbcL Marker Feni Susanti; Ratih Ida Adharini; Dini Wahyu Kartika Sari; Eko Setyobudi
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.907-917

Abstract

Gracilaria spp. is a commercial seaweed utilized in various food, pharmaceutical, and health industries. Due to the high plasticity of seaweed, morphological identification must be validated by molecular identification using DNA barcoding. This study aims to identify the genetic diversity of Gracilaria spp. based on DNA barcoding with an rbcL marker. Samples were collected from six beaches, i.e., Trenggole, Drini, Siung, Wediombo, Nguyahan, and Ngedan, from September-November 2021. The methods in this study were sampling, sample preservation, morphological and tissue observations, DNA extraction, PCR and electrophoresis, and data analysis. The results showed four species of seaweed based on the rbcL marker: Gracilaria sp., G. salicornia, G. edulis, and G. vieillardii. Based on 18 samples confirmed by phylogenetics, five different species were found, namely G. salicornia, G. edulis, G. vieillardii, Gracilaria sp. 1, and Gracilaria sp. 2 The last two species, i.e., Gracilaria sp. 1 and Gracilaria sp. 2, from the intertidal zone of the south coast of Yogyakarta may have never been reported to GenBank.
Macroarthropod Diversity, Distribution, and Community Structure in Cikarae Cave of the Klapanunggal Karst, West Java Isma Dwi Kurniawan; Cahyo Rahmadi; Rahmat Taufiq Mustahiq Akbar; Omar Calva; Fezaa Ashelia Zakia Ameliee; Ahmad Zaenal Ependi
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.995-1007

Abstract

Arthropods are the most dominant fauna in cave realms. Ecological studies of cave-dwelling arthropods are essential for cave ecosystem conservation. This study was conducted to determine the ecological aspects of macroarthropods in Cikarae Cave, West Java, focusing on their diversity, distribution, and community structure. The cave passage was divided into three zones based on environmental disparities. Data collection was carried out through direct search and counting methods. Data were analyzed using non-metric multidimensional scaling (NMDS) and several ecological indices (diversity, evenness, and dominance). Nineteen macroarthropod morphospecies were recorded and distributed among 5 classes, 11 orders, and 18 families. Most of these morphospecies were troglophiles. A new troglobitic species (Isopoda: Philosciidae) with a high degree of troglomorphy and exclusive microhabitat was registered. Most morphospecies were collected in Zone 1 (17), followed by Zone 3 (9) and Zone 2 (8). Collected macroarthropods preferred cave walls over floors and ceilings. Overall, Cikarae showed a low diversity index (0.782) and evenness (0.265), while dominance was relatively high (0.692). Trachyjulus tjampeanus, Rhaphidophora sp., and Theridiosomatidae sp. were the most dominant taxa.
Effect of the Supplementation of Endogenous Probiotics in Feed on Growth Performance, Digestive Enzyme Activity, and Non-Specific Immunity Gene Expression of Sandfish, Holothuria scabra Juveniles Sari Budi Moria Sembiring; Jhon Harianto Hutapea; Ketut Mahardika; I Nyoman Adiasmara Giri; Rarastoeti Pratiwi; Haryanti; Suwarno Hadisusanto
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.808-815

Abstract

The present study aimed to evaluate the effects of endogenous compared to commercial probiotics on the growth, digestive enzyme activity, and non-specific immunity of sandfish juveniles. Treatments were: A. diet without probiotic; B. diet supplemented with endogenous probiotics Gamma proteobacterium strain M-4, Bacillus subtilis strain Q-1, Bacillus sp. strain E-2; C. diet supplemented with a commercial probiotic containing B. subtilis, B. licheniformis, and B. pumilus. The research was conducted for 4 months using 12 plastic containers, 30 juveniles each (initial weight of 2.72±0.37 g, mean ± standard deviation). From each container, ten samples were taken randomly every 14 days and weighed and three intestine samples at initial and every following month to analysis enzyme activities. At the end the study, all juveniles were counted and weighed individually, and performed a challenge test by injected a 106 CFU ml-1 Vibrio azureus strain 4C-1 at 0.1 ml/ind. Immune response observed were: total coelomate and gene expression (SOD, CAT, LZM) by Quantitative real-time PCR. The specific growth rate of juveniles fed by diet B was significantly different from treatment A (P<0.05), its final weight was higher compared to diets A and C (P<0.05). Protease, lipase, and amylase activity in treatment B was higher compared to C and A (P<0.05). The survival rate, total coelomocyte count, gene expression after being challenged were higher in treatment B compared to C and A (P<0.05). The present study showed endogenous probiotics promote growth, improve digestion enzyme activity, and stimulate non-specific immune responses.
Red Betel Leaf Bioactive Compounds as ERα Receptor Inhibitors In Silico and MCF-7 Cell Anticancer In Vitro Ayu Tri Nursyarah; Mega Safithri; Dimas Andrianto
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.789-796

Abstract

Cancer is one of the leading causes of death in the world. Excess endogenous estrogen is a risk factor for breast cancer. Red betel leaf herbal plants have been used as an alternative cervical and colon cancer treatment. This study aimed to obtain the active compounds that play a role in ERα receptor inhibitors in silico and to determine the anti-breast cancer cytotoxic activity of the extract and fraction of red betel leaf against MCF-7 cells. We use in silico research method using the YASARA Structure software with anti-breast cancer receptors, namely 3ERT, and in vitro using the MTT test on the anti-breast cancer cytotoxic activity of MCF-7 cells. There are 38 compounds that were obtained from the research. The results of the in silico test showed that the bioactive compound that played a role in inhibiting the ERα was 2-(4-Hydro xyphenyl)-2-phenyl-N(3,3-diphenylpropyl)-acetamide (44578655), a compound from water fraction, with an inhibition constant of 2.82 × 10-8 µM and Gibbs free energy of –10.2880 Kcal/mol. In vitro results showed that the best cell growth inhibition value was obtained from the n-hexane fraction at a concentration of 500 ppm of 73.42%. The conclusions of this study indicate that the bioactive compound of red betel leaf is water fraction is the best fraction inhibition. However, the hexane fraction proved to have cytotoxic activity against breast cancer MCF-7 cells.
The Effect of Cryopreservation on Cytochrome Oxidase1 (CO1) Gene and the Relationship with Spermatozoa Motility of Albino Pangasius catfish (Pangasionodon hypophthalmus) Uswatun Hasanah; Abinawanto; Alimuddin; Arief Boediono; Eni Kusrini
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.825-833

Abstract

Cryopreservation is a technique for storing cells and tissues at very low temperatures for the possible usage of the stored cells and tissues throughout the year. Sperm cell cryopreservation in some species causes a decrease in sperm quality and DNA damage. Inappropriate cryopreservation protocols can cause changes in sperm physiology. Mitochondria are organelles that play a role in producing energy for sperm motility. Mitochondria have DNA molecules with small sizes compared to structures from nuclear DNA. This study analyzed the effect of cryopreservation on sperm motility and the Cytochrome Oxidase1 (COI) gene. The CO1 gene in mitochondrial DNA plays a role in energy production for spermatozoa motility. The cryopreservation was performed using skim milk and 10% methanol cryoprotectant, and the temperature in the equilibration process was 4-5°C for 10 minutes. Cryopreservation took place for 14 days in the freezer at -80°C. In addition, the thawing process was performed for 1-2 minutes at 40°C. This study found that the number of lesions per 10 kb in the CO1 gene in post-equilibration spermatozoa was (9.24±3.74), and post-thawing spermatozoa (was 10.26±7.54). Spermatozoa motility was obtained in fresh spermatozoa, i.e., 87±1.5%, post-equilibration spermatozoa 79±4.5%, and post-thawing spermatozoa 30±3.2%. This study concluded that cryopreservation of spermatozoa causes CO1 gene lesions and that in cryopreserved spermatozoa, there is a decrease in spermatozoa motility compared to fresh spermatozoa.
Fermentation of Gracilaria verrucosa to Reduce Insoluble Non-Starch Polysaccharide (iNSP) Using Cellulolytic Bacteria Pseudomonas stutzeri (ISO2) for a Dietary Ingredient of Golden Rabbitfish, Siganus guttatus Sri Redjeki Hesti Mulyaningrum; Haryati; Siti Aslamyah; Asda Laining; Hidayat Suryanto Suwoyo
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.946-956

Abstract

A series of experiments were conducted to optimize P. stutzeri (ISO2) fermentation in reducing the non-starch polysaccharide (NSP) of G. verrucosa as golden rabbitfish feed ingredient. A completely randomized experimental design in triplicates was used to optimize the pH of CMC media and the duration of fermentation. Using a 3 × 3 factorial design with two factors and triplicates, the optimum substrate-inoculum interaction was determined. Nine levels combination of G. verrucosa (G1 = 50 g; G2 = 100 g; G3 = 150 g) and P. stutzeri inoculum (P1 = 5%; P2 = 10%; P3 = 15%) were investigated. Cellulolytic activity (CA) of P. stutzeri was measured using UV-vis spectrophotometer, meanwhile chemical compound and physical characteristics of fermented G. verrucosa were evaluated using Fourier Transform Infra Red (FTIR) and Scanning Electron Microscope (SEM) respectively. Data on fermentation optimization were analyzed statistically using ANOVA. The result indicated pH, duration of fermentation and substrate-inoculum ratio had a significant effect on bacteria growth and CA (P<0.05). P. stutzeri grew well at pH 8, the fermentation process was ideally running in four days with (150 g-10%) G:P level. Hemicellulose was the most biodegradable NSP compared to cellulose and lignin. Fermented G. verrucosa (FG) had FTIR vibrations which indicated the conversion of the cell wall to reducing sugar. The fermentation process resulted in surface structure changes of G. verrucosa based on SEM photos.
Antifungal Substances Produced by B. subtilis Strain W3.15 Inhibit the Fusarium oxysporum and Trigger Cellular Damage Rury Eryna Putri; Nisa Rachmania Mubarik; Laksmi Ambarsari; Aris Tri Wahyudi
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.843-854

Abstract

Soybean Fusarium wilt and root rot disease caused by a necrotrophic ascomycete pathogen, F. oxysporum, triggered severe damage to the plant tissues and organs and impacted heavy losses. Biocontrol agents, Bacillus subtilis, were commonly used to produce a broad spectrum of antifungal substances and were gradually used in biocontrol studies for plant disease management. Investigation and determination of the inhibiting mechanism of antifungal substance produced by B. subtilis on F. oxysporum should be done to protect the soybean plant. This study revealed that basal nutrient broth (NB) gives the best antifungal activity. The stationary phase of the bacterial growth curve was obtained on two days of cultivation and showed the maximum antifungal activity against F. oxysporum. Ethyl acetate (EA) extraction of bacterial supernatant generated crude EA extract, which showed half inhibition (IC50) at 306.42 µg/ml obtained from the dose-response regression curve. Post-treatment mycelia of F. oxysporum with bacterial extract were demonstrated as hyphal deformation followed by malondialdehyde (MDA) accumulation. Furthermore, cellular leakage on fungal cells that may be triggered by antifungal compounds from strain W3.15 occurred. Last, the related antifungal compounds were predicted to be epicatechin and benzophenone from the LC-MS/MS analysis of crude EA extract. Accordingly, the biocontrol agent B. subtilis strain W3.15 promises a strong potency for biofungicide development.
Antioxidant, Cytotoxic Activity and Protein Target Inhibition of Ethyl Acetate Fraction Melinjo Seed (Gnetum gnemon L.) by In Vitro and In Silico Studies on HeLa Cervical Cancer Cells Rawi Ingra Savitri; Nuha Haifa Arifin; Rifki Febriansah
HAYATI Journal of Biosciences Vol. 30 No. 5 (2023): September 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.5.864-873

Abstract

Cervical cancer is one of the most common cancer suffered in women. Chemotherapy usage often causes physical and psychological side effects in patients. This study aims to determine the antioxidant and cytotoxic effects of the ethyl acetate fraction of melinjo seeds (Gnetum gnemon L.) on HeLa cervical cancer cells through in vitro and in silico assays. Melinjo seed was extracted by maceration using ethanol 70% and fractionated with ethyl acetate to obtain the Ethyl Acetate Fraction of Melinjo Seed (EAFMS). The identification of the active compounds group was done using Thin Layer Chromatography (TLC) method. In vitro studies were conducted on antioxidant tests using the 2,2-diphenyl-1-picrylhydrazyl (DPPH) method and cytotoxic activity test using 3-(4, 5-dimethylthiazolyl-2)-2, 5-diphenyltetrazolium bromide (MTT) Assay. In silico test for molecular docking analyzed by Autodock Vina method. The TLC analysis of EAFMS showed the presence of the stilbenoid compounds group. The antioxidant activity of EAFMS is weak, with an IC50 value of 175.8 g/ml. Cytotoxic activity of EAFMS is categorized as toxic to HeLa cancer cells with an IC50 value of 21.69 g/ml, while EAFMS has a synergistic effect combined with doxorubicin as a standard drug with a combination index (CI) value of 0.24-0.80. A molecular docking test of gnetin C with VHR receptor found a strong and stable bond with a docking score of -8.3 kcal/mol. Thus, EAFMS has the potential to be used as a chemopreventive agent for cervical cancer and can be combined with doxorubicin.

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