cover
Contact Name
Isna Rasdianah Aziz
Contact Email
isna-rasdianah@uin-alauddin.ac.id
Phone
+6285242001984
Journal Mail Official
biogenesis@uin-alauddin.ac.id
Editorial Address
Department of Biology, Faculty of Science and Technology, Universitas Islam Negeri Alauddin Makassar. Jl. H.M. Yasin Limpo No. 36 Samata, Gowa, South Sulawesi, Indonesia. 92113
Location
Kab. gowa,
Sulawesi selatan
INDONESIA
Biogenesis: Jurnal Ilmiah Biologi
ISSN : 23021616     EISSN : 25802909     DOI : https://doi.org/10.24252/bio
Biogenesis: Jurnal Ilmiah Biologi is a peer-reviewed and open-access journal that publishes original scientific work with the advancement of tropical bioscience in Asia. The integration between Islam and tropical bioscience explicitly represents the Biogenesis: Jurnal Ilmiah Biologi as an academic publication for Islamic scientists, which could contribute to the advancement of tropical biology studies in the Islamic world. The journal invites research articles, short communication, critical and comprehensive scientific reviews concerning tropical biosciences in Asia, specifically in the following subjects: Islamic-integrated tropical bioscience Tropical biodiversity and conservation Biosystematics of tropical species Biochemistry and physiology of tropical species Ecological study and behavior of tropical species Tropical genetics, biotechnology, and bioinformatics
Articles 332 Documents
Glutamic Acid Application for Enhancement of Growth and Productivity of Okra Plant (Abelmoschus esculentus L. Moench) Eva Septiyana; Nintya Setiari; Sri Darmanti
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.10146

Abstract

Red okra fruit has high nutritional value and fiber but still has low production. Monosodium glutamate (MSG) consists of sodium and glutamic acid. In plants, sodium can role of replacing potassium, stomata physiology, and chlorophyll biosynthesis. Glutamate as the nitrogen donor in primer metabolism and gibberellic acid precursor. The assumption that MSG in plants has a positive impact. This research aimed to examine the effect of MSG and the optimum dosage for enhances of growth and production. This research was conducted with Completely Randomized Designs (CRD) with one factor, is the MSG dosage (0, 3, 6, and 9 g). Quantitative data were analyzed using analysis of variant (ANOVA) dan Duncan’s Multiple Range Test (DMRT) at a 95% confidence level. The result shows that the MSG treatment enhances the growth of the okra based on parameters of plant’s height, fresh weight of plant, dry weight of plant and the width of the leaf and enhances the production of the okra based on the flowering time, the number of the flower, the number of the fruit, the percentage of flower becoming fruit, the weight of fruit, width of fruit, and the diameter of the fruit. The optimal dosage of MSG for okra production and growth is 3 g/plant.
Inheritance and Comparison of Phenotypic Characters from Hybrid Chicken GK-Bro (Gallus gallus Linnaeus, 1758) Putu Ayu Damayanti; Budi Setiadi Daryono; I Wayan Swarautama Mahardhika
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.9493

Abstract

GK-Bro (Gallus gallus Linnaeus, 1758) is a hybrid chicken from crossing between ♀ F2 Broiler ♂ F2 Golden Kamper that have variation of phenotypic character. To meet the market’s demand, GK-Bro must have prime phenotypic character in both quantity and quality. This research aims to examine the phenotype character that occur in GK-Bro by the character of feet morphometry, crest’s shape, feather’s color, and feet’s color. The parental chicken are crossed in Innovation and Agriculture Centre of Gadjah Mada University (Indonesia) and produce 11 chickens with five males and six females filial. The filial are maintained intensively and qualitative data were observed at the end of seven weeks, classified based on the percentage of the phenotypic class. Quantitative characters that observed were tibia and femur length after seven weeks, using control pelung, broiler, and F1 broiler. Quantitative data showed that the average length of the tibia and femur of GK-Bro is lower when compared to the control but the ratio of feet morphometry is closer to pelung. Qualitative data classified crest form in one class, feather’s color in 4 classes and feet’s color in 3 class. 
Monitoring Anurans Diversity along Code River, Province of Daerah Istimewa Yogyakarta, Indonesia Donan Satria Yudha; Wulan Rahmani Akmal; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.10174

Abstract

The research about frogs and toads diversity in the Code River, Province of Daerah Istimewa Yogyakarta (DIY) had been done in 2012 (Yudha et al., 2013). Now, after five years passed, we conduct monitoring activities for updating its diversity and distribution. After five years, we consider that there are many changes along the river that influenced habitat condition for frogs and toads which live along and near the river. Some of the changes are unused land became human settlement or paddy fields and wasteland. The purpose of this research is to monitor the diversity of frogs and toads after five years along Code River. The method used was acoustic and visual encounter survey (VES). We have done total of 10 days of sampling. Each day we did two times sampling, during the day and night. Results show that the species number of frogs and toads found in 2012 were slightly higher compare to 2017. The frogs and toads on upstream part were diverse in 2017 compare to 2012 due to natural restoration of riparian vegetation occur on upstream. The frogs and toads on midstream part were less diverse in 2017 compared to 2012 due to increasing human activities near the river and less riparian vegetation. The frogs and toads on downstream part were also less diverse in 2017 compared to 2012 due to increasing human activities near the river and more household waste stuck on riparian vegetation. There was variation of anurans diversity after five years due to changing on physical condition of the river and human activities near the river.
In Silico Insight the Prediction of Chlorogenic Acid in Coffee through Cyclooxygenase-2 (COX2) Interaction Yohanes Bare; Dewi Ratih Tirto Sari; Yoga Tribakti Rachmad; Gabriella Candrakirana Krisnamurti; Agustina Elizabeth; Andri Maulidi
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.9847

Abstract

Inflammation was signs of pathological or abnormality in tissue to give an alert as a trouble signal to the system. Therapeutic using NSAIDs has some side effects. This research explored the potential role of chlorogenic acid as natural therapeutic compound to inhibit the inflammation target such as COX-2 by interaction model. The research method used in this study was the molecular docking approach, which binds ligand and protein. Protein data provided by Protein Data Bank (ID: 6cox) while, chlorogenic acid obtain from PubChem (CID: 1794427). We docked COX-2 and chlorogenic acid using Hex 8.0.0. Visualization and analysis of the molecular interactions of chlorogenic acid and COX-2 conducted by the Discovery Studio Client 4.1 software. Chlorogenic acid has a high permeability and is easily absorbed based on five Lipinski Rule. Interestingly, we found Fifteen amino acid was binding with chlorogenic acid that formed by hydrogen bond and van der Waals.The interaction between ligand-protein results in energy binding -327.59cal/mol. Chlorogenic acid has a potential role to inhibit inflammation pathway by inhibiting COX-2. We predicted chlorogenic acid has a potential as therapy anti-inflammatory to suppress COX-2 as mediator inflammation.
Phylogeny of Marine Ornamental Fish Members of Labridae from the South Coast of West Java, Indonesia Dion Satrio Pambudi; Agus Nuryanto; Romanus Edy Prabowo
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.10205

Abstract

Labridae is a large and diverse fish family. Many species under Labridae inhabits Indonesian coral reefs. However, limited scientific data are available on ornamental fish diversity in Labridae from the South Coast of West Java. The purpose of the research is to give information about species diversity and phylogenetic relationships among species of Labridae fish family in the South Coast of West Java. This research will be conducted using a survey method with a purposive sampling technique. The observed parameters include morphometric and meristic characters and evolutionary relationships among species within  Labridae family species collected from the South Coast of Sukabumi and Garut, West Java. Morphological data will be analyzed descriptively based on morphometric and meristic data. Species-level identification performed by referring to the available identification guide book. Phylogenetic relationships will be analyzed statistically using cladistics method as implemented in PAUP 4.0 applying maximum parsimony algorithm.  The cladogram has a consistency index of 0.563, indicating low homoplasy and proved that the tree was the most parsimonious. Labridae formed monophyletic clade compared to Acanthurus maculiceps, and Cheilio inermis was basal species while the others derived species.
Inventory of Epiphytic Moss in the Tree Trunk Zonation of Jumog Waterfall Ngargoyoso Tawangmangu Karanganyar Central Java, Indonesia Efry Roziaty; Putri Agustina; Siti Naily Rohmah
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.6336

Abstract

The concept of epiphytic plants is a critical plant that determines the processes that occur in ecosystems. Epiphytic plants especially Bryophytes or commonly moss is one of primary productivity. This study aims to record any epiphytic moss in their natural habitat in the Jumog Waterfall Forest Ngargoyoso in Karanganyar Tawangmangu Central Java. The method used in this study was purposive sampling, this method using exploration techniques. Field data observed were epiphytic plants from the Bryophyte groups (moss plants). The results showed that there were five moss colonies namely Bryum billardieri, Octoblepharum albidum, Leucobryum aduncum, Heteroscyphus coalitus and Pogonatum neesii, in 3 different zones of phorophytes, name zone I, II and III.
Morphological Traits, Productive Performance and Genotyping Fat Deposition PPAR Gene in Gama Ayam Crossbreeds of Female F1 Kamper and Male BC1 Kambro Isna Mustafiatul Ummah; I Wayan Swarautama Mahardhika; Budi Setiadi Daryono
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.9993

Abstract

On the recent classification of native Indonesian chicken, there are 31 breeds of chicken. Highly circulated chicken breed in Indonesia is fast-growing broiler that includes several strains such as Cobb 500, Hubbard, Hybro, Isa Hyline, and Hisex. Fast-growing broiler chickens have rapid growth, with excessive fat deposition on chicken carcass which implicates a health problem and unfavorable meat quality. Gama Ayam Research Team conducted selective breeding which produces two new chicken breed Kamper and Kambro. Further selective breeding then crossbred female F1 Kamper and male BC1 (backcross I) Kambro. In this research morphological traits, productive performance and genotyping of PPAR gene related to fat deposition gene and blood lipid content in Gama Ayam were identified. Based on data analysis hybrid chickens morphological traits it concluded that Gama Ayam has a significant variation based on feather color. The productive performance was determined with the feed-conversion ratio (FCR) value which was 3.17. Genotyping of PPAR gene resulted in four polymorphisms that formed 14 haplotypes groups. Based on blood lipid content analysis of cholesterol content, triglycerides content, HDL and LDL, Gama Ayam have significantly lower content of cholesterol (107.05 mg/dl), LDL (44.71 mg/dl) and triglycerides (22.41 mg/dl). PPAR gene polymorphisms are not correlated with blood lipid content in Gama Ayam. A significantly strong correlation between PPAR gene polymorphism on the bodyweight of Gama Ayam at 49-days-old. Triglyceride level, cholesterol level and LDL level in Gama Ayam were lower than broiler chicken. Further research with a larger population size and sex classification of hybrid chicken must be conducted to validate the results.
Population Structure of Siit Rattan (Daemonorops melanochaetes, Blume.) in The Coastal Forest of Tabanio Village, Takisung District, South Kalimantan Hery Fajeriadi; Dharmono Dharmono
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.7647

Abstract

Indonesia as the largest archipelago country in the world has a vast coastline. Various types of ecosystems are scattered on the coast, one of which is coastal forest. One of the functions of coastal forests is as a habitat for flora, including rattan siit (Daemonorops melanochaetes Blume). Siit rattan has a fairly stable commercial value on the market. Its strong structure makes it attractive, not only nationally, even internationally. This study aims to determine the population structure of siit rattan in the coastal forest of Tabanio Village, Takisung District, Tanah Laut Regency. Data collection was done with total roaming techniques, namely along the coastal forest with a width of 50 m and a length of one thousand m to the south. The results of the study were analyzed descriptively. The age of siit rattan (Daemonorops melanochaetes Blume) includes a wide base pyramid, without any stopping or decaying of growth in the pre-reproductive and reproductive phases. Natality rattan siit went well and almost did not experience mortality because the coastal forest of Tabanio Village was guarded by custom by the local community. Environmental factors that inhibit the reproductive rate of siit rattan are air temperatures that were too high from the optimal temperature of siit rattan breeding.
Indonesia Black Cumin (Nigella sativa L.) Seeds Extract as Ameliorant Reproductive Function in Type-2 Diabetes Mellitus Retno Susilowati; Nailirrohmah Hidayatin; Amalia Rizka Diana; Tri Kustono Adi
Biogenesis: Jurnal Ilmiah Biologi Vol 8 No 1 (2020)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v8i1.11973

Abstract

Diabetes initiates augmented damage in levels of nuclear and mitochondrial DNA in males. As a result, the sperm DNA is affected, as well, leading to lower levels of fecundity and influencing reproductive health. This study aims to improve male reproductive function and oxidative stress status in diabetic rats. Combination High Fat Diet (HFD) and Streptozotocin (STZ) injection 30 mg/kg intraperitoneally are the initiations of DM-2 for 14 weeks. Treat therapy using 80% ethanol extract of black cumin seeds takes five weeks. Based on parametric test on ANOVA test results followed by Duncan Multiple Range Tests on the concentration, abnormalities of spermatozoa and Super Oxide Dismutase (SOD) effects and the Kruskal-Wallis test followed by the Mann-Whitney test on non-parametric data of the spermatozoa motility and Malondialdehyde (MDA) levels, showed that obtaining black cumin dose 48 is an effective dose in improving sperm quality and stress oxidation level. It has the same effect with metformin, even has MDA level less than normal rats. This study finds out Ns-48 is an effective dose of ethanol extract of black cumin seeds to improving spermatozoa quality and stress oxidation level, so that it becomes valuable information for research related to the improvement of reproductive function in diabetes mellitus disease.
Hematological Response of Tilapia (Oreochromis niloticus) in Laundry Wastewater Saparuddin Saparuddin; Yanti Yanti; Salim Salim; Harish Muhammad
Biogenesis: Jurnal Ilmiah Biologi Vol 8 No 1 (2020)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v8i1.13137

Abstract

The high concentration of detergent in the aquatic ecosystem potentially affects the fish's physiological condition by disrupting the respiration process and changing the concentration of blood components and chemistry. This study aimed to determine the condition of the hematological parameters of tilapia (Oreochromis niloticus) exposed to wastewater from the laundry industry. Each treatment was stocked with five fish per aquarium (50x30x30 cm). This study used a completely randomized design (CRD) technique with treatments include P0 (0%) as a control, P1 (1%), P2 (2%), P3 (3%), P4 (4%), and P5 (5%) with each treatment exposed to a specific concentration of wastewater and residues. The results showed that the hemoglobin levels of treatments decreased, with the lowest mean of hemoglobin level found in the P2 (7.05 gr%), and the lowest concentration on the 30th day was 7.71 gr%. There were no significant effects of wastewater on erythrocytes and leucocytes number among treatments (P > 0.05). While there were increasing hematocrit levels, the largest mean level was found in the P4 treatment with a value of 24.11 gr%, and the largest mean on the 20th day of observation showed a value of 23.51 gr%. Wastewater from the laundry industry can affect tilapia's hematological condition by decreasing the hemoglobin concentration and increasing the hematocrit levels above the normal condition.