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Journal : Indonesian Journal of Electrical Engineering and Computer Science

Hydrophobicity signal analysis for robust SARS-CoV-2 classification Jamhuri, Mohammad; Irawan, Mohammad Isa; Mukhlash, Imam; Tri Puspaningsih, Ni Nyoman
Indonesian Journal of Electrical Engineering and Computer Science Vol 37, No 2: February 2025
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/ijeecs.v37.i2.pp1294-1305

Abstract

Rapid and accurate classification of viral pathogens is critical for effective public health interventions. This study introduces a novel approach using convolutional neural networks (CNN) to classify SARS-CoV-2 and non-SARS-CoV-2 viruses via hydrophobicity signal derived from DNA sequences. Conventional machine learning methods grapple with the variability of viral genetic material, requiring fixed-length sequences and extensive preprocessing. The proposed method transforms genetic sequences into image-based representations, enabling CNNs to handle complexity and variability without these constraints. The dataset includes 8,143 DNA sequences from seven coronaviruses, translated into amino acid sequences and evaluated for hydrophobicity. Experimental results demonstrate that the CNN model achieves superior performance, with an accuracy of over 99.84% in the classification task. The model also performs well with extended sequence lengths, showcasing robustness and adaptability. Compared to previous studies, this method offers higher accuracy and computational efficiency, providing a reliable solution for rapid virus detection with potential applications in bioinformatics and clinical settings.
Co-Authors AA. Masroeri Abduh Riski, Abduh Adrianus Bagas Tantyo Dananjaya Ahmad Ridwan Akhmad Arif Junaidi Alan Catur Nugraha Alexander Setiawan Alvida Mustika Rukmi Alvida Mustikarukmi Amira, Siti Azza Andreas Handojo Antonio Galileo Tando Ari Kusumastuti Arie Dipareza Syafei Arifah, Enny Durratul Auliya Rahmayani Baiq Findiarin Billyan Chyntia Kumalasari Puteri Danang Wahyu Wicaksono Daniel Happy Putra Darmaji Darmaji Darmawan, Didiet Edi Satriyanto Ekky Hidma Octia Rahmah Elly Matul Imah Elnora Oktaviyani Gultom Elsen Ronando Erna Apriliani Fahim, Kistosil Fendhy Ongko Giandi, Oxsy Ginardi, Raden Venantius Hari Hadi Prasetiya Haloho, Freddi Hartanto Setiawan Hendy Hendy Hendy Hozairi Imam Mukhlash Imam Mukhlash Ira Puspitasari Juhari Juhari, Juhari Ketut Buda Artana Khilmy, Akhmad Ku Khalif, Ku Muhammad Naim Mahardika, Kadek Eri Mahdiyah, Umi Mardlijah - Maulana, Muhammad Agung Adi Mey Lista Tauryawati Mohamad Muhtaromi Mohammad Hamim Zajuli Al Faroby Mohammad Iqbal Mohammad Jamhuri Mohd Aziz, Mohd Khairul Bazli Mondal, Kartick Chandra Muchamad Jati Nugroho Muhammad Ahnaf Amrullah Muhammad Athoillah, Muhammad Muhammad Fakhrur Rozi Muhammad Hajarul Aswad Muhammad, Noryanti Muhammad, Noryanti binti Mujiono, Edo Priyo Utomo Putro Ni Nyoman Tri Puspaningsih Nugraha, Arma Perwira NURUL HIDAYAT Nurul Hidayat Pratama, Qoria Yudi Putri, Endah R.M. Putri, Endah Rokhmati Merdika Putris , Nadhifa Afrinia Dwi Rasyadan Taufiq Probojati Resi Arumin Sani Rita Ambarwati Rita Ambarwati Sukmono Robin Wijaya, Robin Rohwana, Ulir Ronando, Elsen Rukmini, Meme Santoso Santoso Sepriadi, Robby Setiawan, Muhammad Nanda Setumin, Samsul Shahab, Muhammad Luthfi Siti Maghfiroh Soetrisno Soetrisno Sulastri Sulastri Titin J. Ambarwati Victory Tyas Pambudi Swindiarto YAN ADITYA PRADANA Yongky Ujianto Yuda Dian Harja Zulfa Afiq Fikriya