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All Journal International Journal of Electrical and Computer Engineering Jurnal Ilmu Pertanian Indonesia ComEngApp : Computer Engineering and Applications Journal IJCCS (Indonesian Journal of Computing and Cybernetics Systems) Jurnal Ilmiah Teknik Elektro Komputer dan Informatika (JITEKI) POSITIF KLIK (Kumpulan jurnaL Ilmu Komputer) (e-Journal) Edu Komputika Journal Jurnal RESTI (Rekayasa Sistem dan Teknologi Informasi) JURNAL MEDIA INFORMATIKA BUDIDARMA Jurnal Komputasi Jurnal Sains dan Informatika JURNAL ILMIAH INFORMATIKA MATRIK : Jurnal Manajemen, Teknik Informatika, dan Rekayasa Komputer Journal of Computer Science and Informatics Engineering (J-Cosine) Journal of Electronics, Electromedical Engineering, and Medical Informatics Jurnal Informatika dan Rekayasa Elektronik Jurnal Mnemonic Madaniya Jurnal Teknik Informatika (JUTIF) Makara Journal of Science Journal of Data Science and Software Engineering Jurnal Informatika Polinema (JIP) Jurnal Pengabdian Masyarakat Tekno Indonesian Journal of Electronics, Electromedical Engineering, and Medical Informatics Integra: Journal of Integrated Mathematics and Computer Science
Muhammad Reza Faisal, Muhammad Reza
Universitas Lambung Mangkurat
Religion Agriculture, Biological Sciences & Forestry Humanities Computer Science & IT Control & Systems Engineering Decision Sciences, Operations Research & Management Education Electrical & Electronics Engineering Engineering Health Professions Languange, Linguistic, Communication & Media Law, Crime, Criminology & Criminal Justice Library & Information Science Materials Science & Nanotechnology Mathematics

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Journal : Integra: Journal of Integrated Mathematics and Computer Science

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Application of Random Forest Method Classification for Glycosylation in Lysine Protein Sequences Fitriyana, Silfia; Syarif, Admi; Rossyking, Favorisen; Faisal, Mohammad Reza
Integra: Journal of Integrated Mathematics and Computer Science Vol. 1 No. 2 (2024): July
Publisher : Magister Program of Mathematics, Universitas Lampung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.26554/integrajimcs.20241218

Abstract

Grouping glycosylated lysine proteins into groups according to the type of glycosylation seen in the lysine protein sequence is known as glycosylation in the lysine protein sequence. In this work, the sensitivity, specificity, accuracy, and Matthew’s correlation coefficient (MCC) of the random forest approach for classifying the glycosylation of lysine protein sequences were examined. With 214 positive and 406 negative data, the lysine protein dataset derived from benchmark data contains 620 total proteins with a protein length of 15 sequences. 90% of the dataset is used for training, while 10% is used for testing. Using the R package BioSeqClass version 1.44.0, feature extraction employed protein descriptors, specifically AA Index, CTD, and PseAAC, with a total of 60 features. The Random Forest classification algorithm was used to reprocess the results with Mtry values of 4, 8, and 16. The number of trees (ntree) was randomly set to 250, 500, 750, and 1000. The best results were achieved with a dataset split of 90% training data and 10% test data, using Mtry of 42 and 1000 trees, resulting in 89.97% sensitivity, 92.79% specificity, 80.76% MCC, and 90.42% accuracy. These results demonstrate that the combination of feature extraction and the Random Forest algorithm is effective in classifying lysine proteins.
Co-Authors Abdul Gafur Abdullayev, Vugar Achmad Zainudin Nur Adawiyah, Laila Admi Syarif Ahmad Rusadi Ahmad Rusadi Arrahimi - Universitas Lambung Mangkurat) Ahmad Rusadi Arrahimi - Universitas Lambung Mangkurat) Andi Farmadi Andi Farmadi Andi Farmadi Angga Maulana Akbar Annisa Rizqiana Arie Sapta Nugraha Arif, Nuuruddin Hamid Arifin Hidayat Azizah, Azkiya Nur Bachtiar, Adam Mukharil Bahriddin Abapihi Bayu Hadi Sudrajat Dike Bayu Magfira, Dike Bayu Djordi Hadibaya Dodon Turianto Nugrahadi Dwi Kartini Dwi Kartini Dwi Kartini Dwi Kartini, Dwi Emma Andini Fatma Indriani Fatma Indriani Fatma Indriani Favorisen R. Lumbanraja Fitra Ahya Mubarok Fitriyana, Silfia Friska Abadi Friska Abadi Friska Abadi Ghinaya, Helma Hanif Rahardian Herteno, Rudy Irwan Budiman Irwan Budiman Irwan Budiman Ivan Sitohang Julius Tunggono Jumadi Mabe Parenreng Junaidi, Ridha Fahmi Karlina Elreine Fitriani Keswani, Ryan Rhiveldi Kevin Yudhaprawira Halim Kurnianingsih, Nia Lilies Handayani Liling Triyasmono Lisnawati Mahmud Mahmud Mauldy Laya Mera Kartika Delimayanti Miftahul Muhaemen Muflih Ihza Rifatama Muhamad Ihsanul Qamil Muhammad Al Ichsan Nur Rizqi Said Muhammad Alkaff Muhammad Angga Wiratama Muhammad Fauzan Nafiz Muhammad Haekal Muhammad Haekal Muhammad Iqbal Muhammad Irfan Saputra Muhammad Itqan Mazdadi Muhammad Janawi Muhammad Khairi Ihsan Muhammad Mada Muhammad Mursyidan Amini Muhammad Rizky Adriansyah Muhammad Rusli Muhammad Sholih Afif Muhammad Zaien MUJIZAT KAWAROE Muliadi Muliadi Muliadi Muliadi Aziz Muliadi Muliadi Muliadi Muliadi Muliadi Muliadi Mustofa, Fahmi Charish Ngo, Luu Duc Nor Indrani Noryasminda Nugrahadi, Dodon Nurlatifah Amini Nursyifa Azizah Oni Soesanto Prastya, Septyan Eka Purnajaya, Akhmad Rezki Putri Nabella Radityo Adi Nugroho Radityo Adi Nugroho Rahayu, Fenny Winda Rahmad Ubaidillah Rahmat Ramadhani Rahmat Ramadhani Rahmina Ulfah Aflaha Ratna Septia Devi RAUDLATUL MUNAWARAH Reina Alya Rahma Reza Rendian Septiawan Riadi, Putri Agustina Rinaldi Riza Susanto Banner Rizal, Muhammad Nur Rizki, M. Alfi Rizky, Muhammad Hevny Rossyking, Favorisen Rozaq, Hasri Akbar Awal Rudy Herteno Rudy Herteno Rudy Herteno Rudy Herteno Said, Muhammad Al Ichsan Nur Rizqi SALLY LUTFIANI Salsabila Anjani Saputro, Setyo Wahyu Saragih, Triando Hamonangan Sarah Monika Nooralifa Sari, Risna Sa’diah, Halimatus Septyan Eka Prastya Septyan Eka Prastya Setyo Wahyu Saputro Setyo Wahyu Saputro Siti Aisyah Solechah Solly Aryza Sri Redjeki Sri Redjeki Sugiarto, Iyon Titok Sulastri Norindah Sari Suryadi, Mulia Kevin Tri Mulyani Triando Hamonangan Saragih Umar Ali Ahmad Utami, Juliyatin Putri Vina Maulida, Vina Wahyu Caesarendra Wahyu Dwi Styadi Wahyudi Wahyudi Wildan Panji Tresna Winda Agustina Yenni Rahman YILDIZ, Oktay Yudha Sulistiyo Wibowo Yunida, Rahmi