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Molecular identification of sharks and rays species from Aceh waters, Indonesia Ramadhaniaty, Mutia; Ulfah, Maria; Indra, Indra; Fadli, Nur; Razi, Nanda Muhammad
Depik Vol 12, No 1 (2023): APRIL 2023
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.12.1.29136

Shark is a cartilaginous fish that is widely hunted because it has high economic value. The waters of Aceh are directly adjacent to the Indian Ocean and the Malacca Strait making it a preferred habitat for pelagic fish, especially sharks. Information on shark species landed in the waters west and east of Aceh is very limited due to difficulties in identification and commonly used local names. This study aimed to determine the types of sharks landed in Banda Aceh, Meulaboh, Langsa, Southwest Aceh and Simeulu and to find out specifically what species of sharks are most often landed in Aceh waters. Primary data gathering consisted of four stages, namely sample collection, identification using identification books, molecular identification cytochrome oxidase subunit I (COI) and phylogenetic analysis. The results of the molecular analysis of 46 tissue samples from five locations identified 13 species of sharks, namely Carcharhinhus sorrah, Carcharhinhus amboinensis, Triaenodon obesus, Isurus oxyrinchus, Sphyrna zygaena, Sphyrna lewini, Loxodon macrorhinus, Hemipristis elongaria, Stagostoma fasciatum, Nebrius ferrugineus, Chilloscyllium punctatum, Isurus oxyrinchus, Alopias pelagicus, Alopias supercillosus and 1 species of rays, namely Rhynchobatus australiae. Phylogenetic tree reconstruction using the Neighbor Joining method of 610 basepairs consisting of two large clades separates the species Alopias pelagicus and Isurus oxyrichus with Carcharhinus sorrah, Sphyrna lewini, Loxodon macrorhinus and Rhyncobatus australiae with boostrap values of 87% and 64%. The haplotype diversity shown ranged from 0.667-0.889 while the nucleotide diversity ranged from 0.001-0.097. These values indicates high diversity because of the variance in the number of species found.Keywords:BarcodeCOISharks catchAlopias supercillosusSphyrna lewini

Tren Kejadian Dengue (Incidence Rate) dan Kematian Akibat Dengue (Case Fatality Rate) di Indonesia Meyrita, Meyrita; Suwarno, Suwarno; Saidi, Nurdin; Razi, Nanda Muhammad
Bioscientist : Jurnal Ilmiah Biologi Vol. 11 No. 2 (2023): December
Publisher : Department of Biology Education, FSTT, Mandalika University of Education, Indonesia.

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.33394/bioscientist.v11i2.9500

Dengue Hemorrhagic Fever (DHF) is a disease that currently has significant morbidity and mortality rates. In Indonesia, the trend of DHF cases has increased and decreased every year. This study aims to analyze the development of dengue cases by considering two indicators, namely dengue incidence rate and dengue case fatality rate (CFR) during the period 2012-2022, to know the pattern of dengue disease in Indonesia, and evaluate the government's target in handling dengue cases based on IR and CFR rates. The data used is secondary data obtained from the 2021 Indonesian Health Profile and the 2022 Dengue Fever Annual Report. IR and CFR data were analyzed using Microsoft Excel which will be interpreted in the form of graphs to illustrate the trends and patterns of DHF cases in Indonesia, IR maps in 2021 and 2022 were analyzed using ArcGIS software. Based on the results of the analysis, the development of dengue cases during the period 2012-2022 experienced a misalignment between the increasing trend of IR and CFR. The IR value experienced significant fluctuations from 37.3 per 100,000 population in 2012 to 52.07 per 100,000 population in 2022, while the CFR value during the period 2012-2022 tended to decrease from 0.90% (2012) to 0.86% (2022). This pattern reflects the complex dynamics of DHF epidemiology, where an increase in cases is not always followed by an increase in fatalities. The IR and CFR achievements for 2022 have not met the government's expectations, with only 16% of districts/cities having IR values â‰¤ 10/100,000, while the CFR value reached 0.86%, slightly above the set target of 0.7%.

Exploring the Genetic Landscape of Octopus cyanea: Connectivity and Population Structure in Northern Waters of Sumatra Ramadhaniaty, Mutia; Damora, Adrian; Moula, Intania; Fadli, Nur; Razi, Nanda Muhammad; Muchlisin, Zainal A
HAYATI Journal of Biosciences Vol. 33 No. 2 (2026): March 2026
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.33.2.529-539

Octopus cyanea is an ecologically and economically important cephalopod with wide larval dispersal influenced by ocean currents. However, geographic isolation among island clusters in northern Sumatra may restrict gene flow and shape population structure. This study investigated the genetic diversity and connectivity of O. cyanea from five populations (Aceh Island, Weh Island, Banyak Island, Simeulue Island, and Nias Island) using mitochondrial cytochrome c oxidase subunit I (COI) sequences. A total of 21 individuals were successfully amplified, yielding 651 bp fragments. Sequence analysis revealed 11 haplotypes across populations, with haplotype diversity (Hd) ranging from 0.285 in Banyak Island to 0.800 in Aceh Island, and nucleotide diversity (π) between 0.001 and 0.009. Pairwise genetic distances varied from 0.000 to 0.004, with the highest divergence observed between Simeulue Island and Nias Island (0.004), while Aceh Island and Weh Island showed no differentiation. AMOVA indicated that most genetic variation occurred within populations (68.74%), with an overall Fst of 0.315, suggesting low to moderate genetic structuring. The haplotype network demonstrated shared haplotypes among four populations, whereas Simeulue Island harbored unique haplotypes, indicating partial genetic isolation. These results highlight substantial genetic connectivity among O. cyanea populations in northern Sumatra, facilitated by larval dispersal via ocean currents, but also emphasize localized divergence in Simeulue Island. The findings provide critical baseline data for developing ecosystem-based fisheries management, supporting shared stock strategies while accounting for population-specific conservation needs.

Molecular identification of sharks and rays species from Aceh waters, Indonesia Mutia Ramadhaniaty; Maria Ulfah; Indra Indra; Nur Fadli; Nanda Muhammad Razi
Depik Vol 12, No 1 (2023): APRIL 2023
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.12.1.29136

Shark is a cartilaginous fish that is widely hunted because it has high economic value. The waters of Aceh are directly adjacent to the Indian Ocean and the Malacca Strait making it a preferred habitat for pelagic fish, especially sharks. Information on shark species landed in the waters west and east of Aceh is very limited due to difficulties in identification and commonly used local names. This study aimed to determine the types of sharks landed in Banda Aceh, Meulaboh, Langsa, Southwest Aceh and Simeulu and to find out specifically what species of sharks are most often landed in Aceh waters. Primary data gathering consisted of four stages, namely sample collection, identification using identification books, molecular identification cytochrome oxidase subunit I (COI) and phylogenetic analysis. The results of the molecular analysis of 46 tissue samples from five locations identified 13 species of sharks, namely Carcharhinhus sorrah, Carcharhinhus amboinensis, Triaenodon obesus, Isurus oxyrinchus, Sphyrna zygaena, Sphyrna lewini, Loxodon macrorhinus, Hemipristis elongaria, Stagostoma fasciatum, Nebrius ferrugineus, Chilloscyllium punctatum, Isurus oxyrinchus, Alopias pelagicus, Alopias supercillosus and 1 species of rays, namely Rhynchobatus australiae. Phylogenetic tree reconstruction using the Neighbor Joining method of 610 basepairs consisting of two large clades separates the species Alopias pelagicus and Isurus oxyrichus with Carcharhinus sorrah, Sphyrna lewini, Loxodon macrorhinus and Rhyncobatus australiae with boostrap values of 87% and 64%. The haplotype diversity shown ranged from 0.667-0.889 while the nucleotide diversity ranged from 0.001-0.097. These values indicates high diversity because of the variance in the number of species found.Keywords:BarcodeCOISharks catchAlopias supercillosusSphyrna lewini

Diversity of commercially important grouper (Family: Epinephelidae) in Simeulue and Banyak Islands, Aceh, Indonesia Razi, Nanda Muhammad; Muchlisin, Zainal A.; Ramadhaniaty, Mutia; Damora, Adrian; Nur, Firman M.; Siti-Azizah, Mohd Nor; Fadli, Nur
Depik Vol 11, No 1 (2022): April 2022
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.11.1.23790

Grouper is one of the economically important fish groups in the Simeulue and Banyak Islands. However, data on the diversity of the grouper in this region is still limited. This study aimed to inventory the commercially important grouper in Simeulue and Banyak Islands. Sampling was carried out in April - September 2021 at sixteen locations around Simeulue and Banyak Islands. In total, 20 species of commercial grouper consisting of 6 genera were recorded during the study. Epinephelus was the most dominant genus with ten species, followed by Cephalopholis with four species. In addition, seventeen species (85%) were included in the Least Concern (LC), two species (10%) were categorized as Vulnerable (VU), and one species (5%) was Data Deficient (DD). This study provides a database of commercially important grouper in Simeulue and Banyak Islands that can be used to manage the fish group.

Grouper DNA barcoding studies in Indonesia: A short review Razi, Nanda Muhammad; Muchlisin, Zainal A.; Maulida, Siti; Ramadhaniaty, Mutia; Nur, Firman M.; Damora, Adrian; Buang Manalu, Sumarni Laila; Fadli, Nur
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.10.2.21255

Indonesia is recognized as one of the territories that have the highest reef fish biodiversity in the world. One of the commercially valuable fish in this area is the groupers (locally name "kerapu"). At least 76 grouper species have been reported in Indonesian waters, with three species were categorized into "vulnerable", five species "Data Deficient", and 68 species under the "Least Concern" category based on IUCN classification. The increasing exploitations rate had been reported caused the grouper stocks in Indonesia to decrease and threatened extinction. However, only limited scientific data is available regarding the grouper in Indonesia, including their identification. In most fish landing sites across Indonesia, the groupers are morphologically identified and recorded as "kerapu" to replace their scientific species names. Accurate species identification is essential in designing appropriate and sustainable management of fisheries resources. One of the tools that have been used in fish identification is DNA barcoding. In the last two decades, this molecular method has been applied to identify many fish groups globally, including grouper fish. This study reviewed the DNA barcoding approach in grouper identification in Indonesia based on the available literature.Keywords:DNA barcodingGrouperMolecular TaxonomyFisheriesIndonesia

Effect of transplantation media on Pocillopora coral growth rate at TWAL Pulau Weh Octavina, Chitra; Ulfah, Maria; Damora, Adrian; Jalil, Zulkarnain; Razi, Nanda Muhammad; Agustiar, Muhammad; Harahap, Puad Batari; Najmi, Nurul; Bahri, Samsul; Munandar, Munandar; Liu, Shan-Yin Vanson
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.10.2.19222

Coral reef ecosystems have a vital role in waters so that damage to coral reef ecosystems can reduce ecological and socio-economic functions that can impact environmental imbalances, such as reef fish and benthic communities. This study aims to determine the effect of transplant media on the growth rate of the genus Pocillopora coral and see whether it has a significant effect on the rate of coral growth in TWAL Pulau Weh, Aceh Province. The method used is a purposive sampling method in determining stations, analysis using the ImageJ 1.52 application. The results showed that the effect of transplant media on the growth rate of Pocillopora corals were significant differences between structures given an electric current and those not given an electric current with a 95% confidence interval. The average growth value of Pocillopora corals given an electric current is 25.06 mm/month. While the Pocillopora corals that were not given an electric current average growth value was 16.50 mm/month.Keywords:Coral reefCoral transplantElectrical stimulationPocilloporaImagej

Effect of Moina sp. Enrichment with Fishmeal on the Growth of Nile Tilapia (Oreochromis niloticus) Juveniles Akbar, Said Ali; Mayda, Abdillah Del; Razi, Nanda Muhammad
JURNAL AKUAKULTURA Vol 10, No 1 (2026): JURNAL AKUAKULTURA UNIVERSITAS TEUKU UMAR
Publisher : Universitas Teuku Umar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.35308/ja.v10i1.14022

This study evaluated the effectiveness of enriching Moina sp. with fishmeal as a natural feed to enhance the growth performance of Nile tilapia (Oreochromis niloticus) juvenile. A completely randomized design was applied with five treatments and four replicates, consisting of unenriched Moina sp., and enrichment levels of 6 g/L, 8 g/L, 10 g/L and 12 g/L fishmeal. Observed parameters included absolute length growth, absolute weight gain, specific growth rate (SGR) and survival rate. The results indicated that the treatments produced different growth responses, with the 8 g/L enrichment yielding the highest performance, producing an absolute length of 1.37 ± 0.457 cm, absolute weight of 1.32 ± 0.155 g and SGR of 4.93 ± 0.219 % per day. ANOVA demonstrated significant effects on absolute length, absolute weight and SGR (p < 0.05), while survival rate, ranging from 90.00–97.50 %, showed no significant differences among treatments (p > 0.05). Water quality parameters remained within suitable ranges throughout the culture period. Overall, enrichment of Moina sp. with fishmeal at 8–10 g/L exhibits strong potential as a strategy to improve the nutritional value of natural feed. This approach also aligns with sustainable aquatic resource management within the framework of SDGs 14.

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