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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
Arjuna Subject : -
Articles 1,091 Documents
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Landmark-Based Geometric Morphometric of Apis dorsata and A. d. binghami Wing Venation in Indonesian Archipelagos Innayah Zahara; Fahri Fahri; Jacobus S.A Lamerkabel; Qashiratuttarafi Qashiratuttarafi; Berry Juliandi; Rika Raffiudin
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.658-668

Abstract

The giant honey bee Apis dorsata has a vast distribution in Asia, including in the Indonesian archipelagos, whereas A. d. binghami is endemic to Sulawesi Island. This research aimed to analyze the variations of landmarks in wing venation of A. dorsata from Sumatra, Belitung, Java, Sumbawa, Moluccas islands, and A. d. binghami in Sulawesi, based on geometric morphometric analysis. Nineteen landmarks from 200 wing venations were analyzed using Thin Plate Spline software. Our study found landmarks 16 and 17, known as Cubital Index in traditional morphometrics, contributed to the wing shape of A. dorsata and A. d. binghami Among all samples, these two landmarks show high displacement in the wing shape of A. d. binghami in Sulawesi and A. dorsata in the Moluccas. On the contrary, we found that the Sumatra, Belitung, and Java Apis dorsata revealed low displacement in the deformation grid; resulting in their shapes being more similar to the reference landmark. The variations of wing shape separate A. d. binghami from Sulawesi and Sumbawa in the Principle Component Analysis and agreement with the Neighbor-joining tree. Therefore, the geometric morphometric based on landmarks of wing venation is a powerful tool to discriminate the subspecies level of A. dorsata.
Diversity and Population Structure of Local Rice Varieties from Indonesia Revealed by SSR Markers Rerenstradika Tizar Terryana; Puji Lestari; I Gusti Komang Dana Arsana; Kristianto Nugroho; I Made Jana Mejaya; Priatna Sasmita; Yudi Sastro; Karden Mulya; Dwinita Wikan Utami; Mastur
HAYATI Journal of Biosciences Vol. 29 No. 6 (2022): November 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.6.749-761

Abstract

Indonesia's local rice varieties (Oryza sativa L.) have a wide range of diversity that can be valuable sources for crop improvement with molecular markers. This study investigated local rice varieties' genetic diversity and population structure using simple sequence repeat (SSR) markers. The SSR markers demonstrated their informativeness for genotypic characterization as represented by the gene diversity indices and polymorphic information content. The UPGMA dendrogram divided 63 varieties into two distinct clusters with different levels of sub-grouping and the tendency according to their origins, as supported by PCoA. In contrast, PCA of these varieties according to agro-morphological traits was scattered in all quadrants. Thus, DNA level variation analyzed by SSR seems to complement the phenotypic traits, which were not well structured and revealed significant genetic diversity among varieties, within, and among populations (P<0.01). The pattern of grouping structure analysis of total varieties into two subpopulations is similar to the dendrogram according to SSR markers but better resembles the pedigree information of the set local varieties. These findings have implied their importance in rice breeding for genetic improvement, maintenance, and management of local genetic resources in Indonesia.
Epstein-Barr Virus and Malaria Interactions: Immunology Perspective Insani Budiningsih; Jaap M. Middeldorp; Yoes Prijatna Dachlan; Usman Hadi
HAYATI Journal of Biosciences Vol. 29 No. 6 (2022): November 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.6.824-833

Abstract

Epstein-Barr Virus can cause various diseases, from acute inflammatory diseases such as fatal or chronic EBV infection, infectious mononucleosis as well as lymphoid and epithelial cancer, various autoimmune diseases, and also could interact with malaria. As EBV infects 95% of the world population, and more than 30% are infected with the protozoan parasite, with more than 500,000 deaths due to malaria cases. It is important to understand how EBV dysregulates the immune system, especially when the virus is interacting with other pathogens such as malaria parasites, causing more severe conditions in certain people like Burkitt Lymphoma. This review will be informative about the mechanism of how EBV interacts with malaria parasites and how it affects the immune system. Knowledge of various cytokines triggering the immune system which may provide links to control/minimize malaria disease severity.
Conjugational Transformation of Wild Type Bacillus halodurans CM1 by Methylated Recombinant Plasmid Harbouring a Gene Encoding for Alkaline Protease and the Protease Activity Assay of the Transformant Valerry Athalia Priyanka; Maria Ulfah; Lina Mulyawati; Abinawanto; is helianti
HAYATI Journal of Biosciences Vol. 29 No. 6 (2022): November 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.6.799-805

Abstract

Protease contributes significantly to various industrial sectors, as shown by its increasing demand. An indigenous previously isolated bacteria, Bacillus halodurans CM1, is a wild-type bacterium whose ability to produce alkalotermophilic protease. In this study, the transformation of methylated pBBRE194 plasmid containing alkaline protease gene from this strain (PBBRE194-prot-CM1) into itself using a conjugation approach was conducted, and the measurement of the alkaline protease activity of the recombinant bacterium was carried out. The recombinant B. halodurans CM1 has been verified to carry the methylated pBBRE194 prot-CM1 by examining its ability to degrade protein in media containing skim milk and tetracycline, but also by amplifying tetracycline resistance gene sequence with 1,024 bp length of plasmid pBBRE194 prot-CM1 by PCR method from the recombinant bacterium. The results confirmed that recombinant B. halodurans CM1 was positively harboring plasmid pBBRE194 prot-CM1. Alkaline protease produced by recombinant CM1 reached higher activity than wild type between 18-36 h of cultivation. The alkalotermophilic wild type B. halodurans could accept the recombinant plasmid into their cells via conjugational transformation is firstly reported to our further knowledge.
Effects of Dietary Mannan-Oligosaccharide (Mos) and Multi-Species of Bacillus on Growth and Feed Utilization in Leopard Coral Grouper Plectropomus leopardus Juvenile Sudewi Sudewi; Ni Wayan Widya Astuti; Yasmina Nirmala Asih; Afifah Nasukha; Muhammad Marzuqi; Indah Mastuti; Ketut Mahardika; Sari Budi Moria Sembiring; I Nyoman Adiasmara Giri
HAYATI Journal of Biosciences Vol. 30 No. 1 (2023): January 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.1.140-147

Abstract

This study assessed the growth and feed utilization in leopard coral grouper Plectropomus leopardus juvenile fed dietary prebiotic mannan-oligosaccharide (MOS) and multi-species of probiotic bacteria (Bacillus cereus BS6, B. subtilis BS3, and B. amiloliquefaciens BS4). The experiment was performed by feeding four replicates groups of juveniles weighing 3.61±0.60 g on four experimental diets, and each diet included: only MOS (PRE); the multi-species of Bacillus (PRO); a combination of MOS and the multi-species of Bacillus (SYN) and without supplementation (CON). When MOS (PRE) or the multi-species of Bacillus (PRO) was included in the diet solely, the growth of the fish was fairly good, although there was no significant difference with the control diet (p>0.05). Unexpectedly, the combined inclusion of MOS and the multi-species of Bacillus (SYN) did not increase the growth and feed utilization in Plectropomus leopardus juvenile. Presumably, MOS did not exert any favorable effects on the multi-species of Bacillus. This study suggested that no advantage was obtained when MOS and the multi-species of Bacillus were included in the diet simultaneously. In addition, the inclusion of MOS in higher levels may be necessary for better feed utilization and growth in leopard coral grouper Plectropomus leopardus.
Physiological Characteristics to Indicate Water Use Efficiency and Drought Tolerance of 30 Indonesian Sorghum [Sorghum bicolor (L.) Moench] Accessions Wahyu Widiyono; Satya Nugroho
HAYATI Journal of Biosciences Vol. 30 No. 1 (2023): January 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.1.171-181

Abstract

Water use efficiency (WUE) is an essential subject in drought-restricted agricultures. Physiological parameters can be used to understand plant efficiencies in water usage. This research aimed to understand the physiological characteristics of 30 Indonesian sorghum accessions (Sorghum bicolor (L.) Moench), which indicate WUE and drought tolerance. Field research was conducted at Cibinong Science Center, National Research and Innovation Agency (BRIN) using Randomized Block Design with 30 sorghum accessions in 3 replicates. Experimental parameters included photosynthetic photon flux density (PPFD), stomatal conductance (GSW), photosynthetic (A) and transpiration (E) rates, and Leaf Area Index (LAI). The WUE was measured using four different approaches: instantaneous WUE (A:E), intrinsic WUE (A:GSW), and the relation between the biomass dry weight (BDW)/A and BDW/E. Based on WUE measurements, we concluded that sorghum accessions could be clustered into five groups, from the most efficient to inefficient water use. We also found that in some cases, WUE based on single leaf measurement had a positive correlation with WUE based on biomass, indicating its sufficiency in determining WUE status. The inconsistencies may be due to different sorghum physiological characteristics regarding gas exchange due to external stimuli (PPFD).
Genetic Parameters, Inter-relationship Among Agronomic Traits and Dehulled Rice Morpho-Biochemical Profile of Promising Black Rice x Mentik Wangi Lines Eka Oktaviani; . Suprayogi
HAYATI Journal of Biosciences Vol. 29 No. 6 (2022): November 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.6.834-844

Abstract

A comprehensive understanding of the genetic parameters and the interrelationship among characters in the breeding population is crucial for selecting low amylose and high antioxidant black rice varieties. Meanwhile, dehulled rice morpho-biochemistry profile can be used to determine the grain quality of F6 and F7 lines of Black Rice x Mentik Wangi var. The objectives of this study were to determine the agronomic traits, figure up the genetic parameters, describe the relationship among agronomic characteristics of the F6 lines, and determine the morpho-biochemical profile of F7 dehulled rice. Agronomic traits showed a difference in each line. Genetic parameters in each trait showed various categories. Path analysis showed that the number of tillers affected the dry weight and grain weight per panicle, but the plant dry weight did not directly affect the weight of 1,000 grain. Directly, the weight of 1,000 grain was only significantly affected by the grain weight per panicle trait. The F7 lines had a difference in grain length and amylose content. The dehulled rice color of the two lines showed the combination of the two parents. Based on the student T-test conducted on F6 and F7 grain, there was no difference in antioxidant content between the two sample groups. The antioxidant activity of all lines was in the range between the antioxidant activities of the two checked varieties. Although further research is still needed, the lines have the potency to be developed as low amylose pigmented rice.
Squash Leaf Curl Virus: Species of Begomovirus as the Cause of Butternut Squash Yield Losses in Indonesia Dewa Gede Wiryangga Selangga; Listihani Listihani
HAYATI Journal of Biosciences Vol. 29 No. 6 (2022): November 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.6.806-813

Abstract

Curling symptom was found in pumpkin plants in Bali, and the PCR detection result using Begomovirus universal primers indicated Begomovirus infection. Further research was conducted to determine the distribution, molecular character of SLCV, and yield loss of the pumpkins. Sampling was carried out at pumpkin plantations in 9 districts in Bali. Detection and identification were carried out using PCR method, followed by cloning and DNA sequencing. DNA band with the measurement of 900 bp was successfully amplified from several pumpkin samples from Denpasar, Gianyar, and Buleleng. Homology analysis of nucleotide sequences using the database in GenBank of SLCV of Balinese isolates showed the highest homology and kinship of 97.3-98.4% and 98.4-99.3% respectively with East Timor isolates from pumpkin plants. The phylogeny analysis showed that SLCV Indonesian isolates were in the same group as Asian isolates. The result of this study is the first report on infection and molecular characterization of SLCV in pumpkin plants in Indonesia. The yield loss caused by curling disease on individual pumpkin plants was 56.3%, and the disease caused a decrease in the quality of harvest fruits. Yield loss estimation caused by the disease in fields with different levels of disease intensity ranged from 10.02 to 25.83%. It was equal to yield loss ranging from IDR 878,400.00 to IDR 10,826,400.00 depending on the disease intensity. It is found that the correlation between curling disease severity and yield loss was high.
Clinical and Hematological Parameters of Captive Timor Deer (Rusa timorensis) under Physical Restraint Virgilius Martin Kelake Kedang; Anita Esfandiari; Arief Purwo Mihardi; Robby Wienanto
HAYATI Journal of Biosciences Vol. 29 No. 6 (2022): November 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.6.742-748

Abstract

Timor deer (Rusa timorensis) is native species in Indonesia that faces many threatening issues. Studies related to the health aspects of Timor deer are considered essential to provide some information related to deer health management in captivity. Deer handling procedures in captivity in Indonesia are commonly carried out with physical restraint. Physical restraint in animals is known to cause various changes in animals’ clinical and hematological values. This study aimed to determine the clinical and hematological parameters of Timor deer under physical restraint in captivity. This study used ten Timor deer that consisted of five stags and five hinds. The deer was positioned in a chute, then continued with the physical examination and blood sampling. Parameters observed in this study are clinical and hematological parameters. This study showed that clinical parameters of Timor deer under physical restraint have significant differences between sex groups, except for respiration rate parameters. Hematological parameters of physically restrained Timor deer did not show significant differences between sex groups, except for basophil parameters. This study concluded that physical restraint could affect the clinical and hematological parameters of Timor deer.
Physalis angulata Leaf Ethanol Extract Reduces Oxidative Stress and Improves Endothelial Progenitor Cells in L-NAME-Induced Hypertensive Rats Dian Nugrahenny; Nur Permatasari; Setyawati Soeharto; Indriati Dwi Rahayu; Edwin Widodo; Karyono Mintaroem; Hidayat Sujuti; Retty Ratnawati; Elly Mayangsari; Dicky Faizal Irnandi; Lavina Sofia Ardani; Tika Ardhini Wardoyo; Nathania Bella Claresta; Nura Fattah Cantika Yoga; Adinda Chika Anindita; Niarti Ulan Sari Siarnu; Fardizia Putri Alia
HAYATI Journal of Biosciences Vol. 30 No. 1 (2023): January 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.1.81-87

Abstract

This study aimed to evaluate the effects of ciplukan (Physalis angulata L.) leaf ethanol extract on L-NG-nitroarginine methyl ester (L-NAME)-induced hypertensive rats. We randomly divided twenty-five Wistar rats into five groups. The sham group was given a PBS injection. The hypertensive group was injected with L-NAME on days 1 to 28. Three groups of hypertensive rats were given the extract on days 4 to 28. Blood pressure was measured using the tail-cuff method on days 0, 4, 10, and 27. The endothelial progenitor cells (EPCs) in the blood were measured by flow cytometry as a percentage of circulating angiogenic cells (CACs, CD34+/CD309+/CD45+) and endothelial colony-forming cells (ECFCs, CD34+/CD309+/CD45-). Serum NO and MDA levels, as well as serum SOD activity, were measured colorimetrically. Serum TNF-α levels were measured by the ELISA method. The ciplukan leaf extract reduced systolic and diastolic blood pressure, reduced the percentage of EPCs in the blood, increased serum NO levels, reduced MDA levels, increased serum SOD activity, and reduced serum TNF-α levels in L-NAME-induced hypertensive rats. It is concluded that ciplukan ethanol leaf extract exerts protective effects on L-NAME-induced hypertensive rats. These study results can strengthen the scientific basis of using ciplukan leaf ethanol extract to treat hypertension.

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