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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
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Articles 20 Documents
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Search results for , issue "Vol. 31 No. 6 (2024): November 2024" : 20 Documents clear
Comparing Effectiveness of Hand Pollination, Wild Insects and Local Stingless Bees (Tetragonula laeviceps) for Pollination of Exotic Mauritius Raspberry (Rubus rosifolius) Putra, Ramadhani; Dewangga, Rezha Tanu; Hermawan, Endang; Kinasih, Ida; Raffiudin, Rika; Soesilohadi, RC Hidayat; Purnobasuki, Hery
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1050-1060

Abstract

Mauritius raspberry (Rubus rosifolius) is an exotic plant cultivated in Indonesia. Studies showed that the productivity of exotic plants is reducing due to a lack of pollination agent for their origin region. Several methods could be applied to overcome this problem. The study aimed to find the most effective method for pollinating this plant among four pollination regimes: Self-pollination, wild insects, stingless bees (Tetragonula laeviceps), and hand-pollination. The observation was conducted on the insect pollinators' activities (visitation rate, flower constancy, and flower handling time), pollination efficiency, and quality of the fruits produced (fruit volume). The results showed a higher visitation rate (10 to 70 per hour), higher flower constancy (visited from 07.00 to 16.00), and longer flower handling time (13.6 s) of T. laeviceps on raspberry flowers than other insects. High activities related to better raspberry pollination success (96%) and bigger fruits produced. Based on this study, applying stingless bees as pollination agents for exotic plants was the best and potentially applicable to other exotic crops.
Variation and Distribution of the Sulawesi Giant Rat (Paruromys dominator) Based on Morphological Approaches Dwijayanti, Endah; Suryobroto, Bambang; Widayati, Kanthi Arum; Achmadi, Anang Setiawan
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1037-1049

Abstract

Correlations between natural geographic boundaries and variations in organisms' morphology have been well-documented in Sulawesi Island, which has a unique geological history and hundreds of endemic species. One of the widely distributed species of small mammals is Sulawesi giant rat (Paruromys dominator). Considering the geographic condition of Sulawesi, this species is a suitable model for studying geographic influences on morphological change. Moreover, there are no comprehensive studies on this species. Previous studies cannot fully explain the variability due to the lack of representative samples. Here, we measure 19 skull characteristics for 131 adult complete-skull specimens from six distribution areas in Sulawesi. We investigate the variation in skull characteristics using agglomeration nesting (AGNES) for cluster analysis and the standardized major axis (SMA) for allometry analysis. Our results show that P. dominator can be categorized into two groups, but distribution areas, elevation, or sex do not influence those. P. dominator in group 1 had a larger skull size than group 2. The two groups can be distinguished from four characteristics: breadth of mesopterygoid fossa (BMF), breadth of first upper molar (BM1), length of the auditory bulla (LB), and breadth of incisive foramina (BIF). The BMF and BM1 are related to mastication, and the LB and BIF are related to communication. We propose that the skull variation of this species is not correlated with geographical barriers but more clearly correlated with their feeding habits, mating behavior, and ability to escape predation. These findings were useful for future studies on the taxonomic status of P. dominator.
Supplementation Impact of Spirulina platensis Ethanol Extract on Inflammatory Homeostasis Modulation of Rat Spleen at Different Ages Paramita, Reni; Purba, Hastuti Handayani S; Prijanti, Ani Retno; Iswanti, Febriana Catur
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1231-1242

Abstract

Pro- and anti-inflammatory mediators need to be released in a balanced way to maintain a healthy state as we age. One important regulatory element in the equilibrium of pro- and anti-inflammatory mediators is NF-κB. The purpose of this study was to examine how S. platensis affected the control of inflammatory mediators in young, healthy, emerging adults and adults in rats. In this investigation, 200 mg/kg BW of S. platensis extract was administered to six groups of male Wistar rats, ages 12, 18, and 24 weeks, along with a control group. In both the treatment and control groups, NF-κB p65 protein expression was lower at 24 weeks than it was at 12 and 18 weeks. TNF-α and COX-2 proteins were lower in the treatment group than in the control group. All age groups in the treatment group had higher levels of IL-10 protein than the control group. The quantity of NF-κB p65 was positively correlated with COX-2 and TNF-α. By raising the concentration of NF-κB p65, the ethanolic extract of S. platensis altered a mediator of cellular immunity. A decrease followed this in TNF-α and COX-2 and a rise in IL-10 in the rat spleen at different ages.
Extract of Red Okra Pod (Abelmoschus esculentus L. Moench) Chemoprevents N-Methyl-N-Nitrosourea-Induced Kidney Proximal Tubular Cells Damage Achhlam, Divany Hunaimatul; Wahyuningsih, Sri Puji Astuti; Hapsari, Lukiteswari Dyah Tri; Soepriandono, Hari; Dewi, Firli Rahmah Primula
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1061-1070

Abstract

N-Methyl-N-Nitrosourea (MNU) is a compound that induces oxidative stress resulting in high levels of oxidants and damage to body cells. Red okra contains polyphenol and flavonoid active ingredients as antioxidants. This study aims to analyze the effect of ethanol extract of red okra pods (ROPE) on oxidant levels, antioxidant enzymes, and damage to rat kidney proximal tubule cells due to NMU. This study used 30 rats divided into six treatment groups, namely CN (normal), N (negative control; MNU 50 mg/kg BW), P (positive control; MNU and MTX 50 mg/kg BW), T1 (MNU and ROPE 50 mg/kg BW), T2 (MNU and ROPE 100 mg/kg BW), and T3 (MNU and ROPE 200 mg/kg BW). The treatment was carried out on all groups after eight weeks. The results indicate that malondialdehyde (MDA) and nitrogen oxide (NO) decrease with the ROPE treatment. The glutathione reductase (GSH) activity as an antioxidant enzyme increased T1 and T2, while glutathione peroxidase (GPx) showed an increase in T2 and T3. Furthermore, the biochemical marker of the rat kidney showed lower blood urea nitrogen (BUN) and creatinine (Cre) levels in all treatment groups. Then, the repair of damaged proximal tubule cells showed an increase in normal cells and lower swollen cells; however, there was a degradation in necrotic cells in T2 and T3. It can be indicated that the ROPE can act as an antioxidant that can reduce MDA and NO levels, increase GSH and GPx levels, and reduce damage to proximal renal tubule cells due to MNU.
Species Richness and Nesting Sites of Stingless Bees in the Forest and Settlement Areas in Banten Province, Indonesia and their Morphometry Atmowidi, Tri; Oktaviani, Widia Bela; Karimah, Khadijah Nurul; Prawasti, Taruni Sri; Dorly; Priawandiputra, Windra
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1095-1105

Abstract

Stingless bees (Apidae: Meliponinae) are distributed in the tropics, and there are more than 600 species worldwide, Forty-six species were recorded in Indonesia. Nest of the species is generally found in tree holes, rocks, house walls, house wooden, bamboo cavities, and soil. Current research explores the species richness, nesting sites and morphometry of stingless bee species in the forest and settlement areas in Banten province, Indonesia. Road- and purposive sampling methods were used to explore the stingless bee species. Thirty-five body characters of each stingless bee species were measured. Results showed four stingless bee species found were Tetragonula laeviceps, Heterotrigona itama, Lepidotrogona terminata, and Tetragonula sp. The dominant species found was L. terminata in the forest, while T. laeviceps in the settlement areas. The nesting sites of stingless bees in the forests were found in the tree cavities of various plant species with tree diameter range 39.3-87.3 cm. In contrast, the nest of T. laeviceps was found in the tree of Swietenia mahagoni, Lansium parasiticum, and bamboo cavities of houses in the settlement areas. The nest entrances of stingless bees varied, i.e., oval-rounded, tubular with varied diameters, and blackish-brown in color. The internal structure of the nest consists of brood cells, pollen cells, and honey cells. Heterotrigona itama has the largest body size (5.52 mm in length), followed by L. terminata (4.99 mm in length) and T. laeviceps (3.86 mm in length). Thirty-three characters of H. itama were larger than L. terminata and T. laeviceps, except for gena width and malar length.
Secondary Metabolite Compounds from Alpinia monopleura Extract and Evaluation of Anti-Inflammatory Activity based on In Vitro and In Silico Studies Yodha, Agung Wibawa Mahatva; Badia, Esti; Musdalipah; Reymon; Fauziah, Yulianti; Fusvita, Angriani; Arfan; Wahyuni; Sahidin
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1154-1164

Abstract

Alpinia monopleura is one of the endemic plants of Sulawesi, and it has an extensive distribution in the region. Research on chemical compounds and biological activities of A. monopleura is essential to continue as an effort to support the utilization of native plants for medicine. The extract was obtained using the maceration method. The chemical compounds in the extract were identified using Liquid Chromatography Mass Spectrometry (LCMS). Bovine Serum Albumin (BSA) and molecular docking methods were used to evaluate the anti-inflammatory activity. Ten compounds contained in the extract were successfully identified, E-para-coumaric acid (1), trans-ferulaldehyde (2), 3,5,6-trihydroxy-4',7-dimethoxyflavone (3), nevadensin (4), malvalic acid (5), ent-16α,17-hydroxy-19-kauranoic acid (6), 3′,5-dihydroxy-7,4'-dimethoxy flavone (7), saurufuran B (8), 5-hydroxy-7,8,2'-trimethoxyflavanone (9) and dehydroabietic acid (10). The anti-inflammatory activity of extracts from rhizomes and stems of A. monopleura were 8.62 and 10.59 mg/L, respectively. Some flavonoids (9 and 7) can bind strongly to specific residues around the COX-2 active site, such as Ser530, thereby interfering with the function of the COX-2 enzyme and reducing the production of pro-inflammatory prostaglandins. Thus, A. monopleura extract has the potential to inhibit inflammatory responses through molecular regulation of the COX-2 enzyme.
3D Culture Cells Technique for Exosomes Isolation of HEK293 and its Application on WiDr Cells Audina, Mia; Mariya, Silmi; Zaelani, Bella Fatima Dora; Yuliana; Darusman, Huda Shalahudin
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1173-1180

Abstract

Three-dimensional (3D) culture is a technique commonly utilized in bioprocessing and biomedical research. Exosomes have been investigated as carriers for medications in numerous studies employing 3D culture methodologies. The objective of this research is to employ 3D cell culture for the isolation and treatment of exosomes targeting colon cancer cells. The isolation of exosomes obtained from HEK293 cells was conducted through the ultracentrifugation technique. Subsequently, exosome treatment was administered to WiDr cells at concentrations of 3.5 µg/ml, 7 µg/ml, and 14 µg/ml.The validation of molecular markers of exosomes (CD9 and CD81), along with BAX, BCL-2, and CD133, was performed using qRT-PCR. The findings revealed the successful isolation of exosomes derived from HEK293 cells, which exhibited the expression of markers CD9 and CD81. Furthermore, the expression of BAX and BCL-2 indicated the potential of exosomes to induce apoptosis, while the expression level of CD133 decreased with treatment at varying concentrations. These results suggest that exosome treatment has the capability to impede the proliferation of WiDr cells and reduce the expression of CD133, thereby signifying the potential application of exosomes as an in-vitro model for investigating cancer therapy in the future.
Flowering Phenology and SiDREB2-based SNAP Marker-assisted Hybridity Confirmation for Artificial Hybridization of Indonesian Foxtail Millet (Setaria italica L. Beauv) Genotypes Nugroho, Rizki Bagus; Chusnah, Uswatun; Suwarno, Willy Bayuardi; Ardie, Sintho Wahyuning
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1082-1094

Abstract

Foxtail millet hybrid development encounters challenges due to its self-pollinating nature, small florets, and tool availability for confirming true hybrid. Our research aimed to assess flowering phenology and explore artificial hybridization employing SiDREB2 based-SNAP marker. The research consisted of three experiments. The first experiment focused on the panicle phenology of foxtail millet, while the second experiment focused on floret phenology and reproductive organs. The artificial hybridization successfulness was validated with SNAP markers based on the SiDREB2 gene in the third experiment. Observations on two genotypes (ICERI-5 and ICERI-6) revealed panicle initiation at 49–69 days after planting (DAP), with anthesis occurring 6 days after panicle emergence (DAPE). Florets exhibited the formation of reproductive organs at 3 DAPE, delineating distinct stages of pollen development leading up to anthesis. Our findings emphasized the significance of implementing male-sterile induction treatment at 4 DAPE to regulate pollen development for successful hybridization by 6 DAPE. The hybrid evaluation revealed varied germination rates and confirmed hybrid percentages across different crossing series, validated by SiDREB2-based SNAP marker. ICERI-5×Botok-4 exhibited high germination but a low confirmed hybrid percentage, while Botok-4×ICERI-5 and Botok-10×ICERI-6 showed the opposite trend. Reciprocal crossings showed unilateral incompatibility in confirmed hybrid percentage.
LC-HRMS-Based Metabolomics for Profiling the Metabolites in Different Plant Parts of Centella asiatica Rafi, Mohamad; Madya, Muhammad Miftahul; Karomah, Alfi Hudatul; Septaningsih, Dewi Anggraini; Ridwan, Taopik; Rohaeti, Eti; Aisyah, Siti; Idroes, Rinaldi
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1106-1115

Abstract

Centella asiatica, or pegagan in Indonesia, is a perennial plant used in Indonesian traditional medicine (jamu) and functional food with many biological activities. Those biological activities come from the bioactive metabolites present in C. asiatica. Differences in metabolite pathways in each part of the plant affect the accumulation of metabolites contained, thus impacting its biological activity. Therefore, this study aims to identify and evaluate differences in the distribution of metabolites in each part of C. asiatica, namely leaves, stems, stolons, and roots. Each plant part was extracted using methanol and sonicated for 30 minutes. The metabolites in the samples were separated and detected using UHPLC-Q-Orbitrap HRMS. Differences in the distribution of metabolites in each part of the plant were evaluated using chemometrics analysis. UHPLC-Q-Orbitrap HRMS analysis could positively identify 37 metabolites, most of which belong to the phenylpropanoid, triterpenoid, triterpenoid saponin, and flavonoid groups. Principal component analysis was able to clearly distinguish each part of the plant using the peak intensity of the overall chromatogram and the peak area of the identified metabolites. The different biosynthetic pathways of metabolites in plants could cause a difference in the distribution of metabolites in each plant.
Molecular Characterization of Infectious Bursal Diseases Virus VP2 Gene Fragments Obtained from Commercial Broiler Farms in Central Java and The Yogyakarta Special Region Province Damairia, Bernike Anggun; Putri, Khrisdiana; Wibowo, Michael Haryadi
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1201-1211

Abstract

Infectious Bursal Disease (IBD) is an infectious and immunosuppressive disease primarily affecting young chickens. Despite stringent biosecurity and vaccination for control measures, the effective management of IBD remains challenging. The disparity in observed clinical symptoms in the field infections further complicates matters for breeders. The study aims to perform molecular characterization of VP2 gene fragments to identify the latest genotype of field IBD viruses. Twenty-two samples of bursa of Fabricius were collected from broilers suspected of IBD in commercial farms located in Central Java and The Yogyakarta Special Region from 2021 to 2022. Viral RNA was extracted from these samples, and after amplification, a 743 bp PCR product was obtained and subjected to sequencing. The obtained sequences were analyzed in Mega X for multiple alignments, amino acid prediction, homology, and phylogenetic tree construction. Lesion, i.e., Bursa of Fabricius enlargement, oedema, swelling of plica bursa, gelatinous mass, hemorrhage, atrophy, and thigh muscles petechiae to hemorrhage, were considered indicative of IBD. Out of 22 samples tested by RT-PCR, 19 were positive, and 13 samples were selected for sequencing. All sequenced samples belonged to Genogroup A3, specifically the very virulent IBD (vvIBD) strain.

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