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All Journal Althea Medical Journal Global Medical and Health Communication Universa Medicina JURNAL PENDIDIKAN JASMANI DAN OLAHRAGA Jurnal Ilmu Kedokteran dan Kesehatan Jurnal Medika Malahayati Jurnal Pendidikan Kedokteran Indonesia: The Indonesian Journal of Medical Education Health and Medical Journal Medika Kartika : Jurnal Kedokteran dan Kesehatan Jurnal Ilmiah Kesehatan Jurnal Prima Medika Sains Indonesian Journal of Cancer
Gunadi, Julia Windi
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Biochemistry, Genetics & Molecular Biology Dentistry Education Health Professions Immunology & microbiology Medicine & Pharmacology Nursing Public Health Veterinary

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Journal : Indonesian Journal of Cancer

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The Differential Gene Expression of Squamous Cell Carcinoma Versus Basal Cell Carcinoma Highlights Oxidative Phosphorylation As A Potential Factor in Metastasis: A Single-Cell Gene Expression Analysis Study Soekmadji, Peter Nugraha; Sanjaya, Ardo; Tangano, Justin Javier; Gunadi, Julia Windi
Indonesian Journal of Cancer Vol 19, No 2 (2025): June
Publisher : http://dharmais.co.id/

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.33371/ijoc.v19i2.1264

Abstract

Background: Nonmelanoma skin cancer (NMSC) can be classified into basal (BCC) and squamous cell carcinoma (SCC). Combined, they rank 5th among the highest incidences of cancer in the world. Despite their low mortality rate, metastasis remains a significant concern. Basal cell carcinoma grows slowly and rarely metastasizes, unlike squamous cell carcinoma, which usually metastasizes when left untreated. However, it is currently unknown what influences their metastatic potential.Method: This research uses single-cell RNA expression data from the Gene Expression Omnibus database. The data will be preprocessed, normalized, and integrated before differential expression and enrichment analyses. Additionally, the 5 most upregulated genes in basal cell carcinoma compared to squamous cell carcinoma and vice versa will be discussed.Results: 165 genes highly expressed in BCC were identified and enriched, with the most significant enrichment for genes promoting apoptosis. We also identified 143 genes highly expressed in SCC, which had the most significant enrichment for genes involved in oxidative phosphorylation. The top 5 upregulated genes in BCC were KRT17, CXCL8, RPS17, CCL20, and IER3, and in SCC were KRT1, LY6D, FABP5, S100A8, and KRT10.Conclusion: We identified differentially expressed genes, including those related to oxidative phosphorylation and cell multiplication, which may help explain the varying behaviors of these cancers, particularly the higher metastatic potential of SCC. However, further research is needed to examine the effects of oxidative phosphorylation on these cancer cells.
Co-Authors Albert Manggading Hutapea Ardo Sanjaya Arief Budiono Astrid, Stephanie Camillo, Keyshia Valentine Daud, Fari Ananda Decky Gunawan, Decky Diana Krisanti Jasaputra Dominika, Katharina Ellen Edwin, Christian Fanny Rahardja Fen Tih Fidelia, Catrinne Gani, Irna Permanasari Ginting, Justin Hadi, Harry Tribowo Hanna Goenawan Hutagalung, Albert Rodney Indah Kusuma Dewi, Indah Kusuma Indahwati, Dwiwahju Dian Indriany, Dini Ishak, Lani Jason, Daniel Jatnika, Danti Dja Kasnadi, Crystallica Luna Kastella, Faysal Kusmawan, Steven Zerin Putra Kwan, Clarissa Mangape, Hiro Salomo Miguna, Landry Natasia, Caroline Putri Nathania, Kezia Octavallen, Andri Octavia, Chitra Oeij Anindita Adhika Pamungkas, Raden Aprian Surya Putra Pangestuti, Balqist Sriprobo Permadi, Andieni Faqhira Pratono, Dono Ray, Hamidie Ronald Daniel Rizamena, Melya Ikbar Ronny Lesmana Rosali, Alexandrina Everdine Rudijanto, Yohanes Rumanti, Rizna Tyrani Rusli, Joseph Saiman, Erik Dwikurnia Sihotang, Sharon Kolose Siringo Ringo, Nalaraty Wahyu Soekmadji, Peter Nugraha Sugiaman, Angela Mulyana Surawijaya, Ade Kurnia Tangano, Justin Javier Tanuwijaya, Farrell Teresa Lucretia, Teresa Titing Nurhayati Valerie, Rachel Vita Murniati Tarawan Wahyudianigsih, Roro Waty, Wenny Wijayanto, Karen Regina Yumilia, Hoo Zecha, Rosa Nurul