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Journal : Omni-Akuatika

Environmental DNA Metabarcoding Reveals the Eukaryotes Diversity in Marine Protected Area of Lombok Island, Indonesia Pratomo, Arief; Bengen, Dietriech Geoffrey; Zamani, Neviaty Putri; Madduppa, Hawis
Journal Omni-Akuatika Vol 18, No 2 (2022): Omni-Akuatika November
Publisher : Fisheries and Marine Science Faculty - Jenderal Soedirman University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20884/1.oa.2022.18.2.1009

Abstract

Biodiversity assessment surveys are necessary for establishing conservation areas. However, such surveys are typically expensive, primarily if they cover a large area and take a long time. The survey difficulty increases when applied to cryptic, sparse, and fast-moving organisms. In addition, it requires expertise in taxonomic-biota classification. The breakthrough environmental DNA (eDNA) metabarcoding technique promises to overcome all the hurdles of assessing the potential for marine biodiversity in a non-invasive, rapid, extensive, and more effective way. We evaluated the ability of the eDNA survey to reveal the potential diversity and character of marine eukaryotes in the Lombok Island Marine Protected Area. A sampling of seawater and sediment eDNA in pore size fractions of 0.4-12 ?m and >12 ?m was carried out in the Core Zone, Non-Core Zone, and Non-Conservation Area, in east, north, and west Lombok, respectively. The detection and classification of eukaryotes using bioinformatics analysis were accomplished following extraction, amplification, and DNA sequencing. We identified 20,478 unique sequences of potential species classified in five kingdoms to 654 marine eukaryotes families. The comparison results show differences in community structure between locations, as well as differences in diversity between media and factions. The eDNA survey can assess marine biodiversity at a macro level and has implications for management in conservation areas.Keywords: Biodiversity, Marine eukaryotes, environmental DNA, the Primary V9-SSU 18S rRNA gene
Co-Authors . Zairion AA Sudharmawan, AA Abdul Kadir Yamko Abdurrachman Baksir Abdurrachman Baksir Aditya Bramandito Adriani Sunuddin Agus A Hakim Agus Atmadipoera Agus Kusnadi Agus Ramli Agus S. Atmadipoera Ahmad Eko Suprianto Ahmad Taufik Ghozali Ahmad Taufik Ghozali Alan Frendy Koropitan Ali Mashar Am Azbas Taurusman Anggraini, Nurlita Putri Aradea Bujana Kusuma Aradea Bujana Kusuma Arief Pratomo, Arief Ario Damar Astini, Lita Astuti, Anggini Fuji Audina putri Ayu Ervinia Ayu, Inna Puspa Aznardi, Shodikin Aznardi Beginer Subhan Benyamin, Azhari Bertoka Fajar S.P. Negara Bisman Nababan Borbee, Erin Budi Prabowo Dea Fauzia Lestari, Dea Fauzia Deddy Bakhtiar Deden Yusman Maulid Dedi Soedharma Dedi Soedharma Dedi Soedharma Denny Khaerudi Dharmawan, I Wayan Eka Dian Pertiwi Dietrich Geoffrey Bengen Dietrich Geoffrey Bengen Dietriech G Bengen Dietriech Geoffrey Bengen Dining Nika Alina Dondy Arafat Dony Kushardono Eko S Wibowo Ester Restiana Endang Gelis Fadel Muhammad Fadillah Rahmawati Fajar Nugroho Farhan Ramdhani Fatchiyyah, Sayyiddah Fauzan Dzulfannazhir Fauzan Dzulfannazhir Fildzah Z Hulwani Firdaut Ismail Firsta Kusuma Yudha Gelis, Ester R. E. Genadi Algadri Hadadi, Namira Hadi, Sutanto Hanami, Cindy Claudea Hari Eko Irianto HEDI INDRA JANUAR Henry Munandar Manik Husna, Alief K Ichtineza H Hardono Idham A. Nasrullah Ikbal Marus Ilyas, Turissa Pragunanti Indra Jaya Indra Jaya Irianda, Nadya Jeny Irmalita Tahir Ismail Ismail Iswandi Wahab Iswandi Wahab Jeddah Isnul Jhon Septin Maurisdo Siregar Jhoni Wahyu Adi Jonson Lumban Gaol Karizma Fahlevy Kustiariyah Tarman Lalu M. Iqbal Sani Lalu M. Iqbal Sani Lane, Christopher Luky Adrianto Luzmi Malia Izza Mahardika Rizqi Himawan Majariana Krisanti Mala Nurilmala Mas Irfanto Meutia Samira Ismet Minsaris, La Ode Alam Moh Muhaemin Mohd Adip Setiawan Muhamad Darmawan Muhamad Gilang Arindra Putra Muhamad Gilang Arindra Putra Muhamad Iqbal Muhammad Andre Nugraha, Muhammad Andre Muhammad Aris Muhammad Fahmi Zuhdi Muhammad Fahmi Zuhdi Muhammad Taufik Mujizat Kawaroe Mujizat Kawaroe MUJIZAT KAWAROE Mujizat Kawaroe Mu’min Mu’min Nadya Cakasana Nadya Jeny Irianda NAILA KHURIL AINI Nebuchad Nezzar Akbar Nebuchadnezzar Akbar Nella Tri Agustini, Nella Tri Neviaty P Zamani Neviaty P Zamani Neviaty P. Zamani Neviaty P. Zamani Neviaty P. Zamani NEVIATY PUTRI ZAMANI Novian Prahandhy Kusuma Nurafni Nurafni Nurhaya Afifah Nurjanah Nurjanah Nurlisa Alias Butet Nurlita P Anggraini Nurlita Putri Anggraini Nurlita Putri Anggraini Prakas Santoso Prakas Santoso Prakas Santoso Prakas Santoso Prehadi . Prehadi Prehadi Purwanto, Budi Rahmat Sawalman Raismin Kotta Ramadian Bachtiar Ramili, Yunita Rani Utari Ayuningtyas Raymon Rahmanov Zedta Ridha Fathihatunnisa Rifki Aldi Ramadhani Risnita Tri Utami Risti Endriani Arhatin Rizky Janatul Magwa Romanus Edy Prabowo Rommy M. Abdullah Rosmi N Pesillette Rustam E Paembonan Ruzanna, Arina Salsabila, Afviya Samsul Bahri Samsul Bahri Sani, L. Mukhsin Iqbal Sani, Lalu M Iqbal Sani, Lalu Mukhsin Iqbal Satya Pratama Atmaja Sayyidah Fatchiyyah Sayyiddah Fatchiyyah Sebastian C. A. Ferse Sebastian Ferse Septy Heltria Setyaningsih, Wahyu Adi Shita Azaraly, Irma Shodikin Aznardi Sigid Hariyadi Sihono Sihono SITI KHODIJAH Sulistiono Sulistiowati Sulistiowati Surahman Surahman Sutanto Hadi Syamsul Arifin Syarifudin Nur Taqiyuddin, Muhammad Wijdan Teddy Triandiza Teddy Triandiza Tyani Fitrian Udhi E Hernawan Ummu Salma Wedi Andika Wiwid Andriyani Lestariningsih Yoppie Wulanda Yusli Wardiatno Zakiyah Rahim Zedta, Raymon Rahmanov