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Journal : Journal of Marine Studies

Compositional analysis of invertebrate communities in Raja Ampat conservation zones using environmental DNA (eDNA) Ruzanna, Arina; Madduppa, Hawis; Butet, Nurlisa Alias
Journal of Marine Studies Volume 1, Issue 2 (July, 2024)
Publisher : Universitas Malikussaleh

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29103/joms.v1i2.17632

Abstract

Raja Ampat conservation area is divided into three zones: the core zone, the tourism zone, and the open zone. This region is crucial for sustainable fisheries and environmental management, yet it is under significant anthropogenic pressure. Accurate species detection is essential for inventory and diversity surveys, and environmental DNA (eDNA) methods have been shown to be more effective than conventional techniques. This study aimed to evaluate whether V9 primers could detect multispecies invertebrate compositions, assess community structure and contributions within each zone, and identify significant differences in invertebrate diversity among the zones. A total of 66 eDNA samples were collected from water and sediment columns across the three zones. Samples were extracted using the NucleoSpin„¢ kit (Macherey-Nagel) protocol, amplified with universal eukaryote primers targeting the 18S gene, and sequenced using Illumina MiSeq. Taxonomic analysis was performed using QIIME2 software and the SILVA database. The study identified 19 invertebrate species. The Shannon-Wiener (H') and Simpson (D) indices revealed greater species diversity in the core zone compared to the tourism and open zones. However, the Kruskal-Wallis test indicated no significant differences in species diversity across the zones. SIMPER analysis demonstrated a high percent contribution of species in each zone. This study highlights the effectiveness of eDNA methods for biodiversity assessment and offers valuable insights into invertebrate community structures within the Raja Ampat conservation area.
Co-Authors . Zairion AA Sudharmawan, AA Abdul Kadir Yamko Abdurrachman Baksir Abdurrachman Baksir Aditya Bramandito Adriani Sunuddin Agus A Hakim Agus Atmadipoera Agus Kusnadi Agus Ramli Agus S. Atmadipoera Ahmad Eko Suprianto Ahmad Taufik Ghozali Ahmad Taufik Ghozali Alan Frendy Koropitan Ali Mashar Am Azbas Taurusman Anggraini, Nurlita Putri Aradea Bujana Kusuma Aradea Bujana Kusuma Arief Pratomo, Arief Ario Damar Astini, Lita Astuti, Anggini Fuji Audina putri Ayu Ervinia Ayu, Inna Puspa Aznardi, Shodikin Aznardi Beginer Subhan Benyamin, Azhari Bertoka Fajar S.P. Negara Bisman Nababan Borbee, Erin Budi Prabowo Dea Fauzia Lestari, Dea Fauzia Deddy Bakhtiar Deden Yusman Maulid Dedi Soedharma Dedi Soedharma Dedi Soedharma Denny Khaerudi Dharmawan, I Wayan Eka Dian Pertiwi Dietrich Geoffrey Bengen Dietrich Geoffrey Bengen Dietriech G Bengen Dietriech Geoffrey Bengen Dining Nika Alina Dondy Arafat Dony Kushardono Eko S Wibowo Ester Restiana Endang Gelis Fadel Muhammad Fadillah Rahmawati Fajar Nugroho Farhan Ramdhani Fatchiyyah, Sayyiddah Fauzan Dzulfannazhir Fauzan Dzulfannazhir Fildzah Z Hulwani Firdaut Ismail Firsta Kusuma Yudha Gelis, Ester R. E. Genadi Algadri Hadadi, Namira Hadi, Sutanto Hanami, Cindy Claudea Hari Eko Irianto HEDI INDRA JANUAR Henry Munandar Manik Husna, Alief K Ichtineza H Hardono Idham A. Nasrullah Ikbal Marus Ilyas, Turissa Pragunanti Indra Jaya Indra Jaya Irianda, Nadya Jeny Irmalita Tahir Ismail Ismail Iswandi Wahab Iswandi Wahab Jeddah Isnul Jhon Septin Maurisdo Siregar Jhoni Wahyu Adi Jonson Lumban Gaol Karizma Fahlevy Kustiariyah Tarman Lalu M. Iqbal Sani Lalu M. Iqbal Sani Lane, Christopher Luky Adrianto Luzmi Malia Izza Mahardika Rizqi Himawan Majariana Krisanti Mala Nurilmala Mas Irfanto Meutia Samira Ismet Minsaris, La Ode Alam Moh Muhaemin Mohd Adip Setiawan Muhamad Darmawan Muhamad Gilang Arindra Putra Muhamad Gilang Arindra Putra Muhamad Iqbal Muhammad Andre Nugraha, Muhammad Andre Muhammad Aris Muhammad Fahmi Zuhdi Muhammad Fahmi Zuhdi Muhammad Taufik MUJIZAT KAWAROE Mujizat Kawaroe Mujizat Kawaroe Mujizat Kawaroe Mu’min Mu’min Nadya Cakasana Nadya Jeny Irianda NAILA KHURIL AINI Nebuchad Nezzar Akbar Nebuchadnezzar Akbar Nella Tri Agustini, Nella Tri Neviaty P Zamani Neviaty P Zamani Neviaty P. Zamani Neviaty P. Zamani Neviaty P. Zamani NEVIATY PUTRI ZAMANI Novian Prahandhy Kusuma Nurafni Nurafni Nurhaya Afifah Nurjanah Nurjanah Nurlisa Alias Butet Nurlita P Anggraini Nurlita Putri Anggraini Nurlita Putri Anggraini Prakas Santoso Prakas Santoso Prakas Santoso Prakas Santoso Prehadi . Prehadi Prehadi Purwanto, Budi Rahmat Sawalman Raismin Kotta Ramadian Bachtiar Ramili, Yunita Rani Utari Ayuningtyas Raymon Rahmanov Zedta Ridha Fathihatunnisa Rifki Aldi Ramadhani Risnita Tri Utami Risti Endriani Arhatin Rizky Janatul Magwa Romanus Edy Prabowo Rommy M. Abdullah Rosmi N Pesillette Rustam E Paembonan Ruzanna, Arina Salsabila, Afviya Samsul Bahri Samsul Bahri Sani, L. Mukhsin Iqbal Sani, Lalu M Iqbal Sani, Lalu Mukhsin Iqbal Satya Pratama Atmaja Sayyidah Fatchiyyah Sayyiddah Fatchiyyah Sebastian C. A. Ferse Sebastian Ferse Septy Heltria Setyaningsih, Wahyu Adi Shita Azaraly, Irma Shodikin Aznardi Sigid Hariyadi Sihono Sihono SITI KHODIJAH Sulistiono Sulistiowati Sulistiowati Surahman Surahman Sutanto Hadi Syamsul Arifin Syarifudin Nur Taqiyuddin, Muhammad Wijdan Teddy Triandiza Teddy Triandiza Tyani Fitrian Udhi E Hernawan Ummu Salma Wedi Andika Wiwid Andriyani Lestariningsih Yoppie Wulanda Yusli Wardiatno Zakiyah Rahim Zedta, Raymon Rahmanov