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INDONESIA
Jurnal Biodjati
Published by Universitas Islam Negeri Sunan Gunung Djati Bandung
ISSN : 25481606     EISSN : 25414208     DOI : 10.15575/biodjati
Core Subject : Science,
Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences
Arjuna Subject : -
Articles 482 Documents
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Morphological Characteristics and Similarity Analysis of Cassava (Manihot esculenta Crantz) in Wonosobo, Temanggung, and Magelang Regencies Sugiyarto, Sugiyarto; Wahyudiningsih, Tri Suwarni; Darmawan, Ericka; Hidayah, Listya
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.25660

Abstract

The diversity of cassava in Wonosobo, Temanggung and Magelang districts must be investigated. The objective of the study was to analyze the diversity of cassava based on morphological characteristics. The cassava of each accession was planted in Bandongan, Magelang Regency. Morphological characters observed after six months of planting included apical leaf color, apical leaf hair, leaf lobe shape, petiole color, leaf color, number of leaf lobes, leaf length, leaf width, petiole length, vein color, petiole orientation, color epidermis of stem, color of outer appearance of stem, distance between nodes, stem growth, color of mature branch tip, branching type, tuber, tuber shape, outer tuber skin color, tuber flesh color, and tuber inner skin color. Analysis of the morphological characteristics of cassava is presented in the form of a dendrogram using the MVSP (Multi Variate Statistical Package) version 3.22. The results of the study obtained 39 accessions of cassava which showed different morphological characteristics. The lowest morphological similarity (0.735) was found in Group I only consisted of 2 acquisitions that did not have tubers, namely Red Vegetables and Green Vegetables and Group II ( Groups III and IV) have a similarity of 0.92. The highest similarity was in groups IIIa and IIIb and Groups IVa and IVb have a similarity coefficient value of 0.95. The morphological diversity of 39 accessions is a source of cassava germplasm: 37 accessions are harvested for tubers and 2 accessions areharvested explicitly for leaves as vegetables. This research was useful for the development of cassava-based food industry bioproducts.
Exploration and Identification of Ectomycorrhizal Fungi at IPB University Campus Forest Adawiah, Adilah; Mufidah, Dinda Rista; Putra, Ivan Permana
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.26109

Abstract

The exploration of ectomycorrhizal fungi diversity around the campus could provide insights into the presence and distribution of these symbiotic fungi in the area. This study aimed to observe, identify, and provide information regarding ectomycorrhizal fungi diversity in the IPB University Campus Forest. The sampling sites represent various tree species including forests, parks, and green spaces. The exploration was done using opportunistic sampling method. The obtained basidiomata were examined for macromorphological and micromorphological examination to identify the ectomycorrhizal fungi. The identification results based on the morphological characteristics confirmed our specimens as Inocybe cf. squarrosolutea (Corner & E. Horak) Garrido and Suillus bovinus (L.) Roussel. The Inocybe was characterized by having small to medium-sized, pileus squamules, dry surface, light brown to yellowish cap, lamellae crowded, cylindrical or attenuated stipe towards the apex, clavate basidia, and hemispheric knobs basidiospores. The Suillus was distinguished by having a cap that is convex in shape with a slightly brownish yellow color and the surface texture of the cap is smooth, lamella in the form of pores that are quite large and angular, brownish yellow in color, yellow tubular stipe, clavate basidia, and oval spores. These two macrofungi are new records in the sampling area and I. cf. squarrosolutea could be the new information for Indonesia. Our finding provides valuable information for ecological studies and contributes to the additional data on Indonesian ectomycorrhizal fungi diversity.
Phenolic Content and Antioxidant Activity Water and Ethanol Extracts of Sungkai Leaves (Peronema canescens Jack) Maretha, Delima Engga; Yani, Dwi Fitri; Silvana, Lili; Masri, Mashuri
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.26777

Abstract

Sungkai (Peronema canescens Jack) is a plant that has phenolic content as an antioxidant that can enhance the immune system (immunomodulator). This study aimed to determine the phenolic content and antioxidant activity of Sungkai leaves (Peronema canescens Jack). The method  of antioxidant with invitro using of the DPPH where the ability of a compound to inhibit DPPH radicals is calculated from the absorbance value using UV-Vis spectroscopy. And Determination of total phenolic content was carried out using UV VIS spectroscopy at a wavelength of 745 nm with the help of Folin Ciocalteu reagentand a nd gallic acid standard curve . The test results showed that the water and ethanol extracts with a concentration of 0.1% had a phenolic content of 0.002% and 0.007%, their antioxidant activity (IC50) with a concentration of 0.02; 0.04; 0.06; 0.08; and 0.1% in the water and ethanol extracts of Sungkai leaves have values of 0.025% and 0.03% respectively. Therefore the best antioxidant activity (IC50) was extracts ethanol of sungkai leaves with phenolic content  of 0.007% and IC50  of 0.03%.
Bandotan (Ageratum conyzoides L.) as Bio-Fungicide for Controlling Fusarium oxysporum in Chili (Capsicum annuum L.) Agustrina, Rochmah; Fadhilla, Nurul; Tamara, Derlian Ella; Chrisnawati, Lili; Yulianty, Yulianty; Mahfut, Mahfut
Jurnal Biodjati Vol 9 No 1 (2024): May
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v9i1.27470

Abstract

Fusarium oxysporum L. is a fungus responsible for causing plant wilt disease in various horticultural crops. Meanwhile, Bandotan (Ageratum conyzoides L.) is commonly known as a weed that contains secondary metabolites with antifungal activity. Therefore, this study aimed to determine the effect of Bandotan stem and leaf extract on the growth of Fusarium oxysporum in chili (Capsicum annuum L.) infected during the germination phase. Evaluation of stem and leaf extract was carried out separately using a one-factor Complete Randomized Design (CRD). A total of four experimental units were used consisting of C+ (sprouts not infected with Fusarium sp. and not given stem or leaf of Bandotan extract), C- (sprouts infected with Fusarium sp. but not given stem or leaf of Bandotan extract), T1 (sprouts soaked with stem or leaf of Bandotan extract and infected with Fusarium sp.), and T2 (sprouts infected with Fusarium sp., and given stem or leaf of Bandotan extract). Each experimental unit was repeated five times, and parameters observed included disease severity, as well as dry and wet weight. The results showed that based on ANOVA test at the 5% significance level, the administration of 60% dry Bandotan stem extract to chili sprouts before Fusarium sp. infection significantly reduced disease severity. However, when the treatment was carried out after sprouts were infected, disease severity was not reduced. The administration of Bandotan leaf extract to sprouts both before and after being infected with Fusarium sp. reduced disease severity but a decrease in dry weight was also observed
Detection of Plantaricin-Encoding Gene and Its Partial Purification in Lactobacillus plantarum BP102 Suryani, Elsa Mega; Jatmiko, Yoga Dwi; Mustafa, Irfan
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.27851

Abstract

Lactobacillus plantarum BP102 isolated from garlic bulb tissue has probiotic properties, including producing bacteriocin called plantaricin. This study aimed to detect the gene encoding bacteriocin produced by Lactobacillus plantarum BP102, and to evaluate the bacteriocin activity at each stage of partial purification. After the end of the log phase of L. plantarum BP102 was determined, and the bacteriocin-encoding genes were checked by PCR technique. Partial purification of bacteriocin was elucidated including pH-neutralized cell-free-supernatant (CFS), precipitation using 80% of ammonium sulfate, and dialysis (cut-off 10 kDa), then the bacteriocin activity in every partial purification stage was evaluated. The molecular weight of plantaricin was estimated using SDS-PAGE analysis. Lactobacillus plantarum BP102 harbored the gene encoding plantaricin (pln) biosynthesis, namely plnEF and plnK genes. The activity of crude bacteriocin was inactivated by the presence of proteinase-K enzyme. The protein concentration was gradually decreased along with the purification process. The bacteriocin activity was demonstrated at each step of the purification process (CFS, precipitation, and dialysis) against Bacillus cereus by 9.23 ± 0.20 mm, 7.86 ± 0.15 mm, and 7.6 ± 0.10 mm, respectively; while, Escherichia coli by 10.3 ± 0.55 mm, 7.4 ± 0.1 mm, and 6.86 ± 0.45, respectively. The molecular weight of partially purified bacteriocin BP102 was found to be approximately 15.9 kDa. The overlaid part of the gel showed a slight inhibition against E. coli due to a low protein concentration. This bacteriocin purification process should be further optimized to improve the bacteriocin activity that could be useful for food preservation.
(RETRACTED) Yield of Sorghum bicolor (L.) Moenh Genotypes in A Plastic Mulch Planting System in Gunungkidul muazam, Arif; Widyayanti, Setyorini; Daryono, Budi Setiadi
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.28840

Abstract

Sorghum is a strategic commodity with good nutritional and high antioxidant content that can be used as a source of food, feed, and industrial raw materials. Sorghum is a relatively low and less intensive crop than other staple food crops. Sorghum yield can be increased by establishing plant population through a mulching planting system. The purpose of this study was to determine the yield power of several sorghum genotypes, namely three new superior varieties (Bioguma, Kawali, and Samurai) and three local varieties (Plonco, Hitam Wareng, and Ketan Merah), planted with a plastic mulch planting system. The research was conducted on farmers' land in Karangmojo, Gunungkidul, Daerah Istimewa Yogyakarta, which is a dryland soil type. The experimental design used a randomized complete block design (RCBD) with 5 replications. Observation parameters included growth components and sorghum production. The results showed that sorghum planting with a mulching planting system was able to provide yields for the Bioguma variety of 7.70 tons/ha, Plonco variety of 8.41 tons/ha, Samurai variety of 5.38 tons/ha, Kawali variety of 8.21 tons/ha, Hitam Wareng variety of 3.91 tons/ha, and Ketan Merah variety of 4.00 tons/ha. Based on the results of the study, it was found that the genotypes of local varieties were able to compete with new superior varieties and had the best growth response and yield power in the rainy season planting.
Diet and Dietary Habits of The Mystus gulio from The Cianjur Estuaries, Indonesia Paujiah, Epa; Dhahiyat, Yayat; Herawati, Titin; Iskandar, Iskandar; Haryono, Haryono; Gumilar, Iwang
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.28995

Abstract

Food and feeding habits are important things in bioecological of fish. This study provides an understanding of the feeding habits and intensity of the M. gulio, by analyzing its food composition, relative gut length (RGL) and gastro-somatic index (GaSI). Fish specimens were caught with a gill net and fishing rod in an area of Cianjur estuaries during a period of one year from October 2021 to September 2022. The analysis of 452 fish samples shows that the relative gut length (RGL) values revealed the feeding habit of M. gulio as carni-omnivorous. The GaSI value was used to determine feeding intensity and was found to be highest in November, at Cidamar estuary, and in the second size group (7.1-10 cm). These results provide new knowledge on this fish species’ feeding habit and intensity, which also helps understand the fish adaptation and conservation in the study area.
Metallothionein Protein Modeling from Pseudomonas aeruginosa PAO1 as A Metal Biosorber Candidate Ikhsan, Fajri; Shulhany, Ahmad; Abdullah, Syarif
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.29170

Abstract

Metallothionein is a protein that is well known to play a role in metal metabolism in bacterial cells. Metallothionein is a multifunctional protein that has the potential to be used as a metal adsorbing agent. Pseudomonas aeruginosa is a ubiquitous gram-negative and rapid-growth bacterium. In addition, the complete genome of Pseudomonas aeruginosa has been largely known. Pseudomonas aeruginosa PAO1 is a strain of Pseudomonas aeruginosa that the complete genome of this strain is easily accessible in NCBI. These features make Pseudomonas aeruginosa PAO1 become a common model in bacterial studies. This research aimed to find and model the putative metallothionein of Pseudomonas aeruginosa PAO1. This research was carried out by bioinformatic and protein homology methods. Based on the results, the putative metallothionein of Pseudomonas aeruginosa PAO1 was found in the bacterial genome at base sequence of 2355918 to 2356157. The putative metallothionein-encoding gene of Pseudomonas aeruginosa PAO1 has a size of 240 bp. The translation result of the gene showed that the putative metallothionein of Pseudomonas aeruginosa PAO1 has 79 amino acids. The modeling result showed the 3D structure of the putative metallothionein of Pseudomonas aeruginosa PAO1 is similar to the metallothionein 3D structure of Pseudomonas fluorescens Q2-87. The 3D structure of the putative metallothionein of Pseudomonas aeruginosa PAO1 was dominated by turn and coil, but contained 1 α-helix structure and 2 β-sheet structures. Based on protein analysis, it was found that the putative metallothionein of Pseudomonas aeruginosa PAO1 has 1 metal-binding cluster with 10 amino acids and the most important amino acid residue is Cysteine . Even though, there was 1 Histidine amino acid residue on the metal-binding cluster.
The Vulnerable Fishing Cat Prionailurus viverrinus from Wonorejo Mangroves, Surabaya, Indonesia Based on Morphology and Molecular Data Kuntjoro, Sunu; Rahayu, Dwi Anggorowati; Budijastuti, Widowati; Winarsih, Winarsih
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.29425

Abstract

The fishing cat (Prionailurus viverrinus) is a protected animal. Currently, the population in nature is declining due to over-fishing and changes in environmental quality. The existence of this fishing cat is an interesting finding that must be immediately studied at the morphological and genetic levels for certainty of its species. This study aimed to identify fishing cat from Wonorejo Mangroves, based on morphology and Cyt b genes analysis. The results of Cyt b identification obtained a DNA sequence length of 398 bp with a similarity value of the five Prionailurus sp. samples between 96.75 to 98.97%. The identification using molecular data consisted of five variations of nucleotide bases, and the average value of the genetic distance with the ingroup was 1.0%., The Cyt b DNA markers analysis succesfully identified fishing cat from Wonorejo Mangroves as Prionailurus viverrinus. 
Spores Morphological Characteristics of Several Ophioglossaceae and Psilotaceae Fern in "Eka Karya" Botanical Garden - Bali Pramesti, Ni Kadek Rika; Lestari, Wenni Setyo; Kriswiyanti, Eniek; Wijaya, I Made Saka
Jurnal Biodjati Vol 8 No 2 (2023): November
Publisher : UIN Sunan Gunung Djati Bandung

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.15575/biodjati.v8i2.29453

Abstract

Ferns of Ophioglossaceae and Psilotaceae families can be found in the "Eka Karya" Botanical Garden, Bali as a collection or naturally growing in the botanical garden and those families are taxonomically classified as primitive ferns. The morphological characteristics of the family of Ophioglossaceae and Psilotaceae or even other types of ferns can be known through the morphological characteristics of the spores. This study aimed to characterize the spore morphology of the Ophioglossaceae and Psilotaceae fern of The "Eka Karya" Botanical Garden. Observation of the morphological characteristics of spores in the "Eka Karya" Botanical Garden was carried out by a simple method without acetolysis. The result of six types of fern plants from the family of Ophioglossaceae and Psilotaceae showed similarities to the spore unit, monads. Each family has unique characteristics that can be used to differentiate each other. The family Ophioglossaceae has a variety of spore colors, trilete spore types, mostly globose-shaped (except for one species the trilobate), the average polar diameter is 28.59±2.19 – 31.00±2.49 μm and the equatorial diameter is 32.85±1.74 – 37.55± 1.71 μm, the P/E ratio is 0.79-0.87, the shape based on the P/E ratio is suboblate, the spore size category is medium and has radial symmetry. For the family Psilotaceae, has a pale yellow-green spore color, monolete type, elongate-ellipsoidal shape, average polar diameter of 26.20±2.76 –29.81±2.96 μm and equatorial diameter of 52.98±2.55 – 63.31±4.65 μm, P/E ratio of 0.47-0.49, shape based on P/E ratio i.e. peroblate, large spore size category and has bilateral symmetry. Those characteristics are valuable taxonomic data that can be used as diagnostic characters for the identification of the families Ophioglossaceae and Psilotaceae.

Page 28 of 49 | Total Record : 482

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