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All Journal Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences Jurnal Ilmu Lingkungan AL KAUNIYAH Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Biogenesis: Jurnal Ilmiah Biologi KUKILA Jurnal Biologi Universitas Andalas Jurnal Sumberdaya Hayati Aceh Journal of Animal Science AKSIOLOGIYA : Jurnal Pengabdian Kepada Masyarakat Jurnal Biologi Tropis Jurnal Hilirisasi IPTEKS (JHI) Jurnal Riset Biologi dan Aplikasinya Jurnal Pengabdian kepada Masyarakat Nusantara Warta Pengabdian Andalas: Jurnal Ilmiah Pengembangan Dan Penerapan Ipteks Lombok Journal of Science Journal on Biology and Instruction (JouBIns) Jurnal Natural Biodiversitas Journal of Biological Diversity
Janra, Muhammad Nazri
Biology Department, Andalas University
Agriculture, Biological Sciences & Forestry Astronomy Biochemistry, Genetics & Molecular Biology Chemistry Computer Science & IT Decision Sciences, Operations Research & Management Dentistry Earth & Planetary Sciences Economics, Econometrics & Finance Education Energy Engineering Environmental Science Health Professions Immunology & microbiology Materials Science & Nanotechnology Medicine & Pharmacology Neuroscience Physics Public Health Social Sciences Veterinary Other

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The importance of DNA barcode reference libraries and selection primer pair in monitoring fish diversity using environmental DNA metabarcoding DEWI IMELDA ROESMA; DJONG HON TJONG; SYAIFULLAH SYAIFULLAH; NOFRITA NOFRITA; MUHAMMAD NAZRI JANRA; FURQAN DWIKI LINTANG PRAWIRA; VIOLA MUTIARA SALIS; DYTA RABBANI AIDIL
Biodiversitas Journal of Biological Diversity Vol. 24 No. 4 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240438

Abstract

Abstract. Roesma DI, Tjong DH, Syaifullah, Nofrita, Janra MN, Prawira FDL,Salis VM, Aidil DR. 2023.The importance of DNA barcode reference libraries and selection primer pair in monitoring fish diversity using environmental DNA metabarcoding. Biodiversitas 24: 2251-2260. Environmental DNA (eDNA) metabarcoding has become an alternative method used for biodiversity monitoring of an ecosystem. The eDNA metabarcoding has advantages compared to the conventional method because it is non-invasive, quick, and requires less cost. However, the effectiveness of the eDNA method is highly dependent on the coverage of the DNA barcode reference and primerpair. A study using the eDNA method was conducted for fish biodiversity monitoring in Singkarak Lake. Two-liter water samples were collected using sterile bottle samples at each sampling site (five sites). The universal primers (Fish FI and Fish R1) used for Next-generation sequencing (GRIDION, Nanopore, Oxford Technologies). The study detected 152 fish species using eDNA metabarcoding. Ten species out of the 30 originally reported in Singkarak Lake were detected using eDNA metabarcoding. The low percentage of fish detected is thought to be due to several factors; incomplete/unavailability of freshwater fish DNA barcodes in Indonesia registered in the database repository, inappropriate primer pair selection, low DNA quality, and the absence of target species DNA in collected water samples. The results demonstrated the significance of correctly registering DNA barcodes to the database and appropriate primer pair selection to identify eDNA metabarcoding. This study provides recommendations using eDNA metabarcoding for monitoring in future work.
Exploration of natural microflora from stingless bee honey harvested from Limau Manis area, Padang, West Sumatra, Indonesia NURMIATI NURMIATI; HENNY HERWINA; PERIADNADI PERIADNADI; MUHAMMAD NAZRI JANRA; RANTI HIDAYAT; TRI WIDYA EDELWIS
Biodiversitas Journal of Biological Diversity Vol. 25 No. 9 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250910

Abstract

Abstract. Nurmiati N, Herwina H, Periadnadi P, Janra MN, Hidayat R, Edelwis TW. 2024. Exploration of natural microflora from stingless bee honey harvested from Limau Manis area, Padang, West Sumatra, Indonesia. Biodiversitas 25: 2908-2916. The natural microflora in stingless bee honey has been explored in three stingless bee species: Tetragonula laeviceps Smith, 1857; Heterotrigona itama Cockerell, 1918; and Geniotrigona thoracica Smith, 1857. This study aimed to identify and analyze the proportions of natural microflora in stingless bee honey. The study used a survey method, with data being descriptively analyzed and presented. The focus was on identifying microflora groups of bacteria and yeast in the honey from these three stingless bee species. Proteolytic bacteria Microflora types were identified based on the medium used: GPA+CaCO3 for acidic microbes, SMA for proteolytic bacteria, and ethanol+CaCO3 for acetic acid microbes. The pour plate method was used to count the microbes. T. laeviceps honey (pH 3.3, sugar level 45% Brix) contained a total of 163.6×104 CFU/mL microflora (161.6×104 CFU/mL bacteria and 2×104 CFU/mL yeast). In contrast, honey from H. itama (pH 3.4, sugar level 57% Brix) harbored a total of 156.7 x 104 CFU/mL microflora (155.7×104 CFU/mL bacteria and 1×104 CFU/mL yeast) and G. thoracica honey (pH 3.7, sugar level 70% Brix) contained 129.6×104 CFU/mL bacteria only. Acidic (A) and proteolytic (P) bacteria were observed in honey samples from T. laeviceps (A= 69.3×104 CFU/mL; P= 36×104 CFU/mL), G. thoracica (A= 53.6×104 CFU/mL; P= 40×104 CFU/mL), and H. itama (A= 67.0×104 CFU/mL; P= 38.6×104 CFU/mL). Acidic and proteolytic bacteria were present in all three honey samples. In conclusion, the microflora composition in stingless bee honey varies across species, with bacteria being the dominant group in all samples. The pH and sugar content of honey may influence the microbial load, indicating a possible link between honey properties and microbial diversity.
Water quality assessment based on saprobic index of phytoplankton with emphasis on several potentially Harmful Algal Blooms (HABs) JABANG NURDIN; RIZKI AZIZ; LASTRI NUR; MUHAMMAD NAZRI JANRA
Biodiversitas Journal of Biological Diversity Vol. 26 No. 2 (2025)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d260238

Abstract

Abstract. Nurdin J, Aziz R, Nur L, Janra MN. 2025. Water quality assessment based on saprobic index of phytoplankton with emphasis on several potentially Harmful Algal Blooms (HABs). Biodiversitas 26: 890-899. The estuary is one of the most productive ecosystems on earth due to the accumulation of all materials, including nutrients, from the upstream to the downstream. This ecosystem also plays a role in habitat function for many living organisms, such as protists, bacteria, invertebrates, and vertebrates. However, this ecosystem may suffer from the accumulation of waste, which leads to pollution. This study aims to investigate and update the information regarding water quality based on the phytoplankton from the estuaries in Padang City, West Sumatra Province, Indonesia, and its potential as Harmful Algal Blooms (HABs). Sampling was conducted from November to December 2023 at six estuaries in Padang, and several formulas, such as diversity, equitability, dominance, Bray-Curtis, and saprobic indices, were used to analyze all of the data, respectively. A total of 130 species of phytoplankton belonging to five classes were identified, where Bacillariophyceae showed the highest diversity (98 species). Overall, the phytoplankton was moderate to highly diverse (2.95>=H' >=3.93), highly equitable (0.73>=EH>=0.93), low dominant species (0.03>=C>=0.11), and the highest similarity using Bray-Curtis occur between station 5 and station 6. At the same time, the Saprobic index was constant (X: 1.00). The pollution status at these estuaries could be considered light at the b-mesosaprobic or b-meso/oligosaprobic phase. In addition, 16 phytoplankton species were identified as HABs from these estuaries, including Alexandrium, Dinophysis, Prorocentrum, and Pseudo-nitzschia. Reducing the source of pollution from organic or non-organic materials, where the majority come from household waste disposal, may keep the health and quality of the rivers and estuaries in Padang
Students’ Perception on Avitourism Potential in Vegetated Area of Universitas Andalas Ibrahim Fauzi; Rihadatul Aisyah; Negi Alfajri; Muhammad Nazri Janra
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 11, No 2 (2026): June 2026
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v11i2.13690

Abstract

This study evaluated the potential of avitourism in the vegetated areas of Universitas Andalas, West Sumatra, through a two-day birdwatching simulation and campus community perception survey. The simulation was conducted on 7–8 December 2024 at three sites (Medicinal Garden, Biodiversity Park, and Biology Education and Research Forest) using casual birdwatching techniques combined with digiscoping to document sighted birds. In total, 26 species representing 25 genera, 19 families, and 7 orders were documented. These included five Near Threatened species, one species listed in CITES Appendix II, four nationally protected species, one Indonesian endemic Prinia familiaris, and two migrants. Passeriformes dominated the records, highlighting their ecological diversity and attractiveness for tourism. An online survey on 44 student respondents showed that 91% of them had at least basic understanding on ecotourism, 95% supported the inclusion of birds as ecotourism attractions, and 50% expressed willingness to pay for avitourism services. Bird aesthetics assessment identified Hemiprocne longipennis (84% score 5) and Eurylaimus ochromalus (80% score 5) as the most attractive species for birdwatching, where the most influencing factors for bird aesthetic were feather coloration, vocalization, behavior, and morphology. These results demonstrate that the vegetated area in Universitas Andalas has potential for avitourism initiatives. Campus-based avitourism can be integrated with biodiversity conservation, empowering environmental education, and generating sustainable tourism opportunities, while engaging communities in conservation-oriented activities that benefit both people and nature.
Struktur dan Komposisi Komunitas Odonata pada Aliran Sungai Hutan Primer dan Sekunder di Hutan Pendidikan dan Penelitian Biologi, Universitas Andalas Muhammad Nazri Janra; Rihadatul Aisyah; Ibrahim Fauzi; Negri Alfajri
Jurnal Ilmu Lingkungan Vol 24, No 3 (2026): May 2026
Publisher : School of Postgraduate Studies, Diponegoro Univer

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jil.24.3.%p

Abstract

Odonata merupakan kelompok serangga akuatik-terestrial yang banyak dimanfaatkan sebagai indikator kualitas lingkungan perairan karena siklus hidupnya sangat bergantung pada kondisi habitat sungai. Penelitian ini bertujuan untuk mengkaji dinamika komunitas Odonata pada aliran sungai dengan perbedaan karakter vegetasi riparian, yaitu hutan sekunder dan hutan primer, di kawasan Hutan Pendidikan dan Penelitian Biologi (HPPB) Universitas Andalas. Survei dilakukan pada periode Agustus hingga November 2019 menggunakan metode transect point count, dengan tiga kali pengamatan pada sungai hutan sekunder (Sec1, Sec2, dan Sec3) serta satu kali pengamatan pada sungai hutan primer (Prim). Struktur komunitas dianalisis menggunakan indeks keanekaragaman Shannon–Wiener (H′), indeks dominansi Simpson (D), indeks kemerataan (E), serta indeks kelimpahan relatif (RAI). Secara keseluruhan, tercatat 15 spesies Odonata yang berasosiasi dengan habitat sungai, terdiri atas 11 spesies Zygoptera dan 4 spesies Anisoptera. Pada sungai hutan sekunder, nilai H′ masing-masing tercatat sebesar 1,49 pada Sec1, 1,53 pada Sec2, dan 1,40 pada Sec3, dengan nilai D sebesar 0,28, 0,30, dan 0,36 serta nilai E sebesar 0,77, 0,67, dan 0,61. Komunitas Odonata pada habitat sekunder didominasi oleh Heliocypha angusta angusta dengan nilai RAI sebesar 43,90% pada Sec1, 45,45% pada Sec2, dan 54,70% pada Sec3. Pada sungai hutan primer, struktur komunitas menunjukkan nilai H′ sebesar 1,47, nilai D sebesar 0,26, dan nilai E sebesar 0,91, dengan spesies dominan Euphaea modigliani yang memiliki nilai RAI tertinggi sebesar 35,71%. Perbedaan nilai indeks ekologi dan RAI antar habitat menunjukkan pengaruh kuat struktur vegetasi riparian terhadap komposisi, dominansi, dan kestabilan komunitas Odonata, serta menegaskan pentingnya sungai hutan primer bagi konservasi spesies sensitif dan sungai hutan sekunder sebagai habitat pendukung spesies toleran.
Co-Authors Aadrean Aadrean Ada Chornelia Ade P Agung Agung, Ade P Ahmad Mursyid Ahmad Mursyid Aidil, Dyta Rabbani Andri Saputra Ashrifurrahman, Ashrifurrahman Azura, Nabilah Rahmachila Bramadi Arya Chornelia, Ada Cynthia Ericca Dahelmi Dahelmi David Gusman Dewi Imelda Roesma Dika Putri Sehati Djong Hon Tjong DYTA RABBANI AIDIL DYTA RABBANI AIDIL Eli Ratni Elni Fatimah Eti Yerizel Fajri Hidayat Fandesti, Shania Refka FURQAN DWIKI LINTANG PRAWIRA Gusman, David Hafizhah Rahmayani Handika, Heru Henny Herwina HENRY HERWINA Herlina Putri Endah Sari Heru Handika Heru Handika Ibrahim Fauzi Ibrahim Fauzi Jabang Nurdin Jasmi Jasmi Jasmi , Jasmi Jasmi Jasmi Jasmi Jasmi Jefrial Santoso LASTRI NUR Lily Rahmawati Lily Rahmawati, Lily Mairawita, Mairawita Maliza, Rita Mansyurdin Meliya Wati Miftahul Ilmi Miftahul Ilmi, Miftahul Muhammad Idris Muhammad Idris Mursyid, Ahmad Nabilah Rahmachila Azura Negi Alfajri Negri Alfajri Nofrita Nofrita Nofrita Nofrita Nurmiati, N PERIADNADI PERIADNADI Pratama Elisa, Tasya Putri Prawira, Furqan Dwiki Lintang Putra Santoso Rahmayani, Hafizhah RANTI HIDAYAT Rezvi, Syakira Tiara Richard Noske Richard Noske Rihadatul Aisyah Rihadatul Aisyah Riski Andrian Jasmi RIZKI AZIZ Rusdimansyah Salis, Viola Mutiara Satria, Rijal Sehati, Dika Putri Shania Refka Fandesti Sinurat, Arthauly Yopita Siti Salmah Siti Salmah Suwirmen, Suwirmen SYAIFULLAH SYAIFULLAH SYAIFULLAH SYAIFULLAH Syaifullah Syaifullah Syakira Tiara Rezvi Syamsuardi Syamsuardi Tasman, Ratna Juwita Tofrizal, Alimuddin TRI WIDYA EDELWIS VIOLA MUTIARA SALIS Wilson Novarino Yeni Gusma Yanti Yundari, Yundari