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BIOTROPIA - The Southeast Asian Journal of Tropical Biology
Published by Southeast Asian Regional Centre for Tropical Biology
ISSN : 02156334     EISSN : 1907770X     DOI : http://dx.doi.org/10.11598/btb
Core Subject : Health, Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Immunology & microbiology Veterinary
BIOTROPIA, The Southeast Asian Journal of Tropical Biology, is a scientific publication of the Southeast Asian Ministers of Education Organization (SEAMEO) – Southeast Asian Regional Center for Tropical Biology (BIOTROP). It publishes articles in the broad areas of tropical ecosystems and environmental impacts, biodiversity conservation and sustainable development and biotechnology.
Arjuna Subject : Ilmu Pertanian dan Biologi (Semua) - Ilmu Pertanian dan Biologi (Lain-Lain)
Articles 520 Documents
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The POTENTIAL OF LACTIC ACID BACTERIA, ISOLATED FROM SEVERAL SOURCES, TO INHIBIT THE GROWTH OF Candida albicans ATCC10231 Ramona, Yan; Darmayasa, Ida Bagus Gede; Dharmawan, Komang; Sudaryatma, Putu Eka; Teriyani, Ni Made; Batho, Yanuarius Felix; Inabuy, Fainmarinat Selviani
BIOTROPIA Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.2.1868

Abstract

ARTICLE HIGHLIGHTS- Lactic acid bacteria have potential to control candidiasis or Candida albicans. - The novelty of this study is to advance the potential of lactic acid bacteria to control candidiasis infection in human, with a view to develop novel LAB-based probiotic candidates with capability to inhibit/prevent infection by C. albicans, the causative agent of candidiasis.ABSTRACTThe main aims of this research were to isolate and identify potential lactic acid bacteria (LAB) inhibitory to Candida albicans. The LAB sources were kimchi, honey and vaginal secrete of healthy women. They were isolated with a view to develop a novel alternative method with reduced use of antifungal agents in the treatment of patients infected by such fungal pathogen. Isolation of the LABs was conducted by applying dilution spread method on de Mann Rogosa Sharpe agar (MRSA) medium supplemented with bromo cresol purple (BCP) indicator. Once purified, they were tested for antagonism against C. albicans in dual culture assays. LAB isolates that showed significant inhibition against the pathogen were identified using 16s rDNA sequences and their sequences were aligned with those of known sequences deposited at the Gene Bank (http://www.ncbi.nlm.nih.gov). The results showed that 46 among more than 100 LABs isolated in this study significantly inhibited the growth of C. albicans in the in vitro dual culture assays, and all showed resistance property to antifungal agent (fluconazole). This indicated that they all have potential to be synergically applied with reduced use of fluconazole in the therapy. The most potential isolates (10 isolates) were closely related to three LAB species, namely Lactobacillus paracasei, Lacticaseibacillus paracasei, and Pediococcus pentosaceus, based on their 16s rDNA sequence similarities with those deposited in the GenBank.
DIVERSITY OF Citrus spp. FROM PENAJAM PASER UTARA, EAST KALIMANTAN BASED ON MORPHOLOGICAL CHARACTERS Oktavianingsih, Linda; Crisdayanti, Noviana; Arif, Muhammad Fauzi; Hendra, Medi
BIOTROPIA Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.2.1872

Abstract

ARTICLE HIGLIGHTS- This research is the first study to provide data on the diversity of Citrus spp. from North Penajam Paser Regency (IKN) area, East Kalimantan for further development and breeding program. - This research offers new information on the distribution of Citrus spp. from the North Penajam Paser Regency (IKN) area, East Kalimantan. - This research provides information on the phenetic relationships among Citrus spp. from the North Penajam Paser Regency (IKN) area, East Kalimantan, and the morphological characteristics that play the most significant role in their clustering. ABSTRACTCitrus spp. is local Indonesian fruit with high diversity and widely distributed around Indonesia country. Diversity and relationship data of Citrus spp. from Penajam Paser Utara-East Kalimantan has never been studied before. This study aimed to provide the diversity and relationship data of Citrus spp. from Penajam Paser Utara using morphological characteristics which served as the basic data for further development and breeding. The research was conducted through observation and sampling, followed by characterization and scoring of morphological data, and lastly the data analysis. The research succeeded in finding 35 accessions of Citrus spp. consisting of C. limon “Jeruk Lemon”, C. suhuensis, “Jeruk Siam”, C. aurantiifolia “Jeruk Nipis”, C. sinensis “Jeruk Manis”, C. maxima “Jeruk Bali”, C. microcarpa “Jeruk Kalamansi”, and Citrus sp. "Jeruk Sunkist" spread in sub-district Penajam, Sepaku, Babulu, and Waru. The dendrogram to clustering Citrus spp. in PPU was divided into two large clusters. Cluster A was grouped based on the character of tree habitus, cordate leaf apex, entire leaf margin, pink mesocarp color, and seed absence. Cluster B was grouped based on the character of the shrubs habitus, acute and rounded leaf apex, crenate leaf margin, white to orange mesocarp color, and numerous seeds in the fruit. This diversity made Citrus spp. from Penajam Paser Utara had high potential value for further development through a plant breeding program.
ENDEMISM AND CONSERVATION STATUS OF TREE SPECIES OF FRESHWATER SWAMP FOREST, PERAK TENGAH, MALAYSIA Nawi, Liliwirianis; Suratman, Mohd Nazip; Yusof, Farida Zuraina Mohd; Mohamad, Abdul Latiff
BIOTROPIA Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.2.1874

Abstract

ARTICLE HIGHLIGHTS- Approximately 3,364 tree individuals with a diameter at breast height (dbh) of 10.0 cm and above were assessed in the Perak Tengah freshwater swamp forest. - The study has recognised 58 species identified are new to Perak.- 72 tree species are listed as endemic, and 194 species are listed in the Red List of Threatened Species by The International Union for Conservation of Nature (IUCN).- This study mphasize the need to preserve ecology and mitigate threats. ABSTRACTThe forests of Peninsular Malaysia have long been recognized as a significant home of endemic species. The purpose of this study was to assess the endemism and conservation status of tree species present in the Perak Tengah freshwater swamp forest. A total of 150 plots (20 m × 20 m) were established in the study area using a random sampling design. Approximately 3,364 tree individuals with diameter at breast height (dbh) of 10.0 cm and above were enumerated in all plots. In the study area, 58 species identified are new to Perak, 72 tree species are listed as endemic, and 194 species are listed in the Red List of Threatened Species by IUCN. Thus, it is crucial to preserve the ecology and lessen the impact of threats in the Perak Tengah freshwater swamp forest, which is home to numerous endemic and endangered species.
Glomus mosseae AND Pseudomonas fluorescens AGAINST Soybean mosaic virus UNDER DRIP IRRIGATION SYSTEM Andayanie, Wuye Ria; Adinurani, Praptiningsih Gamawati; Lukito, Martin
BIOTROPIA Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.2.1889

Abstract

ARTICLE HIGLIGHTS- Glomus mosseae and Pseudomonas fluorescens enhance soybean resistance to SMV.- Ten-day drip irrigation stop at bloom stage boosts seed yield and weight.- Treatment reduces disease severity and increases P. fluorescens population.- Water-saving irrigation method improves soybean performance in dry seasons.- Combining G. mosseae and P. fluorescens increases soybean productivity. ABSTRACTSoybeans [Glycine max (L.) Merr.] require much water, especially in the early stages of growth, flowering, and pod formation and filling. Drought stress on soybeans will increase with global climate change. The research aimed to evaluate the efficacy of Glomus mosseae and Pseudomonas fluorescens in inducing systemic resistance to control Soybean Mosaic Virus (SMV) and the performance of soybean plants with drip irrigation in the dry season. The drip irrigation was stopped for ten days at the beginning of bloom, full bloom, beginning pod, and regular drip irrigation. The application of G. mosseae inoculants used 100 g of sterile compost mixed with 30 spores. The liquid inoculum of P. fluorescens was applied on cotyledonary leaves using the watering method. The plants were inoculated with SMV 6 and 12 days after the P. fluorescens treatment. The symptoms of SMV were recorded two weeks after inoculation, and Indirect ELISA detected the virus. The results showed the combination of G. mosseae and P. fluorescens under drip irrigation stopped at the beginning of bloom for ten days on ELISA absorbance values and disease severity of 0.259 and 3.72 %, respectively. Moreover, this treatment showed the highest values for the 100-seed weight, seed yield, and fresh weight of leaves. The technique of giving water by stopping drip irrigation at the beginning of bloom for ten days will help save water and increase the P. fluorescens population optimally in Alfisols with a pH of between 4.5 and 5.1 with incredibly low fertility. The combination of G. mosseae and P. fluorescens population resulted in a significant increase in the number of G. mosseae’s spores by stopping drip irrigation at the beginning of bloom for ten days.
Orangutan (Pongo pygmaeus ssp. wurmbii) ranging pattern in Punggualas, Sebangau National Park, Central Kalimantan Indonesia: Ranging pattern of P.p. wurmbii in Punggualas, Sebangau National Park Adventus Panda; Ari Meididit; Okta Simon; Wayan Tunas Artama; Dwi Priyowidodo; Tjut Sugandawaty Djohan
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.3.1901

Abstract

Punggualas lies in the western part of Sebangau National Park (SNP). It is a logged-over forest, yet it is one of the major strongholds for the P. p. wurmbii population in the SNP. The range size, as well as the ranging pattern for Punggualas, has never been conducted. The study aimed to estimate orangutan ranging size and pattern as well as their distribution over the Punggualas forest. Ranging data within the area of interest (AOI) was collected from Feb 2015 – Dec 2019 (P1), and Mar 2020 – May 2022 (P2). Minimum convex polygon (MCP), range size of orangutan individual was calculated using adehabitatHR package in RStudio 4.1.1 for Windows. We visualized the distribution in ArcGIS 10.5 with Kernel Density (KD) tool.   The range size of Mother-Infant is the greatest (259,6 Ha) among all individuals being studied within the study periods. Moreover, the size estimation was found greater in Mother-Infant sex class compared to other orangutan studies areas, such as Peat Natural Laboratory, and CIMTROP-UPR which reported a flanged male HR Size reaching 250 Ha per annum. We have found that the ranging pattern significantly changes over the study period. However, during P1, the distribution area was located within the northern of AOI, while in the P2 have changed to the south-eastern part of the AOI.  We concluded that the ranging pattern indeed follows the fruit availability as well as fine-scale habitat quality.
NUTRIENT PROFILE BLACK SOLDIER FLY LARVAE (HERMETIA ILLUCENS): EFFECT OF FEEDING SUBSTRATE AND HARVESTED TIME Maria Rosalia Weko; Frederius Bao; Maria E. Ega; Hendrika Mia; Klara Susanti Ito Una; Marcelina Viana; Lodovikus Wale; Catootjie Lusje Nalle; Yacob M. Burithnaban; Abner T. Lema; Helda; Asrul
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.3.1903

Abstract

The objective of this study was to asses the effect of different feeding substrates (FS), harvesting times (HT), and the interaction between FS and HT on the chemical composition of black soldier fly larvae (BSFL). The experiment used a 4 x 2 factorial arrangement with two main factors, FS (T1, T2, T3, T4), and HT (15-d and 20-d). Thus, there were eight treatment combinations, all together with five replications. The results show that there was no interaction (P>0.05) between FS and HT on dry matter (DM), crude protein (CP), crude lipid (CL), phosphorus (P), gross energy (GE), and amino acid contents. The ash content of BSFL grown on T2 media and harvested on day 15 was higher (P<0.05) than those grown on T2 media and harvested on day 20. The calcium (Ca) content of BSFL grown on all media and harvested on day 20 was higher (P<0.05) than those harvested on day 15. In conclusion, combining fruit wastes and tofu by-products produced BSFL with high CP content but low CL, ash, Ca, and P contents. In addition, BSFL grown on all substrates media and harvested on day 15 had better CP, Ca, and P contents. The dispensable amino acid of BSFLs fed with T3 diets was the best. The lowest body weight gain was produced by feeding a substrate containing a high percentage of rice bran. The findings indicate that the best nutrient composition of BSFL as animal feed would be achieved in early harvest time (15-d) and grown in heterogeneous feeding substrates.
BIODIVERSITY OF CELLULOLYTIC BACTERIA ISOLATED FROM FERMETODEGE FOR RUMINANTS Isnawati, Isnawati; Lisdiana, Lisa; Asri, Mahanani Tri; Trimulyono, Guntur
BIOTROPIA Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.2.1904

Abstract

ARTICLE HIGLIGHTS- Fermetodege as a source of cellulolytic bacteria that degrade cellulosic materials.- Enhances ruminant feed by improving palatability and digestibility.- Utilizes water hyacinth, reducing invasive plant spread and supporting ecosystems.- Bioprospecting reveals new bacteria for effective fermentation starter development.ABSTRACTFermetodege is a name of fermented ruminant feed produced from free heavy metals water hyacinth, rice bran, and corn cobs. Its quality, as well as the fermentation process, are affected by numerous factors, such as the diversity, evenness, and dominance of indigenous cellulolytic bacterial species. A proper understanding of these influential factors is needed to improve the quality of the fermented feed. Therefore, this study aims to evaluate the diversity, evenness, and dominance of cellulolytic bacteria isolated from fermetodege. The cellulolytic activity of the isolates was tested by observing their growth on the carboxymethylcellulose (CMC) media. Isolates with cellulolytic activity formed a clear zone after the colonies were soaked with 0.1% Congo red and rinsed with 1 M NaCl. The Shannon-Weiner's diversity and evenness indexes, as well as Simpson's species dominance, were then calculated. The result showed that the Shannon-Weiner’s diversity index ranged from 0.6849 to 1.8173, and it was categorized as medium. The evenness index was between 0.7778 and 0.9983, which indicates a stable distribution of species. Meanwhile, the Simpson’s species dominance ranged from 0.1835 to 0.5082, which implies that none of the species was dominant. These results show that fermetodege is potentially a source of bacterial isolates and can be used as a fermentation consortium starter.
EFFECT OF THINNING ON GROWTH AND WOOD PRODUCTION OF NATURALLY REGENERATED 8-YEAR-OLD ACACIA MANGIUM WILLD. PLANTATION ON ABANDONED MINING AREA, SOUTHERN THAILAND Jetsada Wongprom; Somporn Maelim; Wasan Chandaeng; Sakhan Teejuntuk; Monthathip Sommeechai; Decha Duangnamon
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.3.1919

Abstract

Thinning is an important practice for promoting growth and maintaining forest plantation for wood production from the remaining trees. In this study, thinning was carried out in a naturally regenerated 8-year-old Acacia mangium plot in the Phangnga Forestry Research Station. Three thinning schemes, with 175 (T1), 300 (T2) and 600 (T3) remaining trees/ha, were compared with the control (no thinning) of 831 trees/ha. The diameter at breast height (DBH) and height (H) of the trees were measured. The differences in growth, current annual increment (CAI), aboveground biomass, and stem volume (V) were analyzed. We observed that the thinning of A. mangium increased the growth rate, with the DBH being clearly affected by thinning. CAIDBH increased significantly, with the DBH class of thinned A. mangium plots also improving after thinning. The stem volume and aboveground biomass of T3 plot was similar to the control plot after thinning. In addition, the number of large saw logs was the highest in T3 plot. The large saw logs can be used for multi-utilization and have a high value. These results suggest that thinning can promote stem growth, and increase the proportion of large saw logs in naturally regenerated A. mangium stands.
HOW CAN THE WORLD OVERLOOK Sapindus rarak BIOPROSPECTION? A NICHE FOR INDONESIA Risha Amilia Pratiwi; Zuhri, Musyarofah; Oktaviani, Indah
BIOTROPIA Vol. 31 No. 1 (2024): BIOTROPIA Vol. 31 No. 1 April 2024
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.1.1926

Abstract

Sapindus rarak is a plant native to Indonesia. Its fruit contains abundant saponins and serves as a detergent for washing batik and baby cloth diapers. This study aims to determine the trends in the S. rarak research based on a bibliometrics and scoping review. The bibliometrics analysis was conducted by defining the search keywords, extracting publications, refining the results, compiling metadata, and mapping authors, keywords, and collaboration. There were 32 publications regarding S. rarak based on Scopus, written by 23 authors between 1992 and 2022, with 387 citations, and 201 publications with 1176 citations due to Google Scholar. Indonesia, the Indonesian Research Institute for Animal Production, and Elizabeth Wina was the most influential country, institution, and author, respectively. The research was clustered to chemistry, biology, medicine, and physics approach. Bio-prospection of S. rarak fruit extract for livestock supplementation was a hot topic. All articles reported S. rarak fruit or seed as the promising organ—no one study about the potency of leaves whereas leaves are also an abundant source of saponin. However, the potency of S. rarak leaves is still overlooked. Research on the efficacy of detergents has not been published in a highly reputable international journal, even though it has been utilized traditionally for a long time. Bibliometrics and scoping review can provide insights for further research roadmaps in this field.
THE CHEMICAL CHARACTERISTICS OF ARABICA AND ROBUSTA GREEN COFFEE BEANS FROM GEOPARK RINJANI, INDONESIA Zainuri; Dewa Nyoman Adi Paramartha; Amira Fatinah; Rini Nofrida; Novia Rahayu; Ines Marisya Dwi Anggraini; Qabul Dinanta Utama
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.3.1940

Abstract

Green coffee beans are also called unroasted coffee beans. The chemical composition of green coffee beans plays a vital role in determining the final product’s aroma. The main objective of this research was to characterize the chemical properties of Arabica and Robusta green coffee beans grown in different regions of Geopark Rinjani, Lombok Island, Indonesia. The water, ash, protein, carbohydrate, total solids, and caffeine contents, total acidity, and pH were determined. Data were analyzed by analysis of variance. The results revealed significant differences in the moisture contents of Arabica beans from Sembalun, Sajang, and Sapit and Robusta beans from Rempek, Selelos, and Genggelang. Additionally, the ash contents of Arabica Sajang and Arabica Sapit showed notable differences compared to other samples. However, the total fat contents of Arabica Sajang, Arabica Sapit, Robusta Rempek, and Robusta Genggelang did not exhibit significant variations. On the other hand, significant differences were observed in the protein contents of all samples, particularly between Arabica Sembalun and Arabica Sapit, compared to Arabica Sajang, Robusta Rempek, Robusta Genggelang, and Robusta Selelos. Robusta coffee beans appeared to have a slightly lower pH than Arabica beans. The latter exhibited consistent acidity in the range of 0.20–0.21, whereas the former showed higher acidity levels (0.23–0.25). Arabica beans had a lower caffeine content, averaging 1.09%, whereas Robusta beans exhibited an average caffeine content of 2.09%. This research provides valuable insights into the chemical composition of green coffee beans from different species and locations within Geopark Rinjani, contributing to a better understanding of the factors influencing the aroma and quality of coffee.

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