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BIOTROPIA - The Southeast Asian Journal of Tropical Biology
Published by Southeast Asian Regional Centre for Tropical Biology
ISSN : 02156334     EISSN : 1907770X     DOI : http://dx.doi.org/10.11598/btb
Core Subject : Health, Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Immunology & microbiology Veterinary
BIOTROPIA, The Southeast Asian Journal of Tropical Biology, is a scientific publication of the Southeast Asian Ministers of Education Organization (SEAMEO) – Southeast Asian Regional Center for Tropical Biology (BIOTROP). It publishes articles in the broad areas of tropical ecosystems and environmental impacts, biodiversity conservation and sustainable development and biotechnology.
Arjuna Subject : Ilmu Pertanian dan Biologi (Semua) - Ilmu Pertanian dan Biologi (Lain-Lain)
Articles 520 Documents
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SPATIAL DISTRIBUTION OF INVASIVE PLANTS IN BANDUNG, WEST JAVA, INDONESIA Rahmawati Rahmawati; Dian Rosleine
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 30 No. 2 (2023): BIOTROPIA Vol. 30 No. 2 August 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1780

Abstract

The urban area is a source of invasive plants that enter through human activities such as agriculture and land-use conversion. Studying the invasive plant in urban areas is essential to understanding the city’s ecosystem health condition. Therefore, this study aims to inventory invasive plants, map their distribution, and explain the relationship between land use with the community diversity and species richness of invasive plants in Bandung. The vegetation analysis was performed using line-transect in 22 study sites distributed using a systematic random sampling method in Bandung to observe the plant species composition. The study plots were placed based on the land-use type. The species name, individual number, frequency, and sampling site locations were noted and analyzed to calculate the important value index (IVI) and the invasive species distribution pattern using the principal component analysis (PCA). The dominant invasive species was spatially mapped. Six types of land use were used in this study, i.e., settlements, street green lanes, gardens, paddy fields, urban parks, and urban forests. There were 187 species found in Bandung, which can be categorized into alien invasive species (39%), invasive native plants (25%), non-invasive alien species (18%), non-invasive native species (15%), and unidentified plants (3%). The most common invasive plants found were Eleusine indica (IVI=10.50%), Trimezia martinicensis (IVI=7.22%), and Cyperus rotundus (IVI=6.74%). Based on the plant community similarity index, the study area with the highest similarities were paddy fields with gardens (50.5%), settlements with road lanes (44.4%), urban parks with road lanes (26.2%), and urban forests with road lane (17.5%). PCA showed Swietenia macrophylla as the most common invasive plant found in urban forests, urban parks, and road lanes, with air humidity as the most influencing environmental factor. Trimezia martinicensis is the most common species in the settlement area affected by high air humidity. Bidens pilosa is an invasive plant commonly found on paddy fields, gardens, settlements, road lanes, and urban park edges. This species can easily and rapidly reproduce with a high survival rate. The many invasive plants found in Bandung must be managed to maintain the urban ecosystem’s health.
ETHNOBOTANICAL STUDY OF MEDICINAL PLANT USAGE DURING COVID-19 PANDEMIC: A COMMUNITY-BASED SURVEY IN INDONESIA Ni Made Dwi Mara Widyani Nayaka; Putu Era Sandhi Kusuma Yuda; Dwi Arymbhi Sanjaya; Desak Ketut Ernawati; Erna Cahyaningsih; Ni Luh Kade Arman Anita Dewi; Maria Malida Vernandes Sasadara
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 30 No. 2 (2023): BIOTROPIA Vol. 30 No. 2 August 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1784

Abstract

Before the availability of a vaccine, Indonesian population relied on traditional medicines to prevent COVID-19. Any species used by indigenous people could lead to further investigations in modern pharmacology, to preserve ancient knowledge, and to plan for plants’ conservation. The study aimed to discover and record species, methods of preparation, route of administration, and motivation in using medicinal plants by the Indonesian population during the COVID-19 pandemic. Participants of survey were selected from the people who live in Java and Bali for responding to an online structured questionnaire. Relative Frequency of Citation (RFC) was employed in the quantitative analysis of the collected data. The pharmacological relevance of the five plants with the highest RFC was further reviewed. The results showed that respondents used 59 plants from 28 families. Five species with the highest RFC were Curcuma longa (0.707), Zingiber officinale (0.674), Cymbopogon citratus (0.269), Kaempferia galanga (0.174), and Curcuma zanthorrhiza (0.165). Most plants were prepared by boiling (77.97%) and administered orally as a single ingredient or mixed with other herbals. Respondents believed that the plants were beneficial as immune-booster (71.26%), maintain good health (24.85%) and stamina (12.28%), and prevent viral infection, including COVID-19 (5.39%). The most commonly used plants might be scientifically based to boost immunity. However, their usage against COVID-19 and the medicinal value of herbal mixtures should be further investigated.
MOLECULAR CHARACTERIZATION OF Aspergillus flavus TOXIGENICITY IN AGRICULTURAL COMMODITIES IN INDONESIA ANIDAH ANIDAH; WINIATI P. RAHAYU; SITI NURJANAH; INA RETNOWATI
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 30 No. 2 (2023): BIOTROPIA Vol. 30 No. 2 August 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1842

Abstract

Toxigenic Aspergillus flavus is a primary producer of aflatoxin in Indonesia, and its presence can lead to the contamination of agricultural commodities. This contamination poses a risk to export-targeted commodities, potentially resulting in their rejection. Therefore, this study aims to characterize the molecular profile of nativeA. flavus isolated from several Indonesian agricultural products, with a major focus on its toxigenicity and toxin production. A total of 18 A. flavus collections were isolated from nutmeg, ground peanut, cacao, coffee bean, corn, white pepper, and soil peanut plantation. Species identification was carried out using molecular and morphological approaches. The toxigenicity of isolates was characterized based on the amplification of aflatoxin gene clusters, while toxin production was assessed through growth simulation on a 10% coconut broth media followed by HPLC quantification. The result showed that all isolates were confirmed as A. flavus based on the morphological and sequence analysis of the ITS region. A total of 11 isolates (61%) were confirmed as toxigenic and produced 1-2 types of aflatoxin, in varying concentrations of high, moderate, or low levels of AFB1. High levels of AFB1 produced by seven isolates namely BIO3313, BIO33212, BIO3361, BIO33404, BIO3338, BIO3352, and BIO3344, had concentration levels ranging from 76.78 to 2241.06 µg/kg, while three isolates (BIO3314, BIO3312, and BIO3381) produced AFB1 below 1 µg/kg. Twenty-nine pairs of aflatoxin gene-specific sequences were successfully amplified as a single band, while some produced non-specific patterns in several low toxigenic and non-toxigenic isolates. Based on the results, it was concluded that completed gene clusters and variations of gene deletion were observed in both toxigenic and non-toxigenic isolates. However, no specific target gene could effectively distinguish the two groups. Two non-toxigenic isolates namely BIO3393 and BIO33403 exhibited a large deletion and could be potential candidates for biocontrol agents.
PRELIMINARY STUDY: FEEDING ECOLOGY AND DAILY ACTIVITY OF THREE COLORED LANGUR (Presbytis chrysomelas ssp cruciger Thomas, 1892) IN DANAU SENTARUM NATIONAL PARK Nyoto Santoso; Sutopo; Lorenzo Elton Meo; Natasya Nurul Fauziah; Alfatheya Margwita Diva
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 30 No. 2 (2023): BIOTROPIA Vol. 30 No. 2 August 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1850

Abstract

Three colored langur (Presbytis chrysomelas ssp cruciger Thomas, 1892) is a primate that has been recognized as a critically endangered species in accordance with the International Union for Conservation of Nature, however still not protected and lacks substantial information about the bio-ecology of their natural habitat. The habitat plays a determining factor not only in space utilization but also the daily activities of the three colored langurs (P c cruciger). The aim of this preliminary study is to collect information regarding their habitat characteristic, feed species, daily activity, and canopy stratum utilization. This research was conducted between July and August of 2021 at Bukit Semujan, Lupak Mawang Resort, Danau Sentarum National Park. The method implemented was to collect the habitat characteristic by plot samples, and their daily activity data by scan sampling with consecutive recording. The study demonstrated that langur inhabited both primary as well as mixed forests (swamp, cultivation land, and secondary forest). There were 27 species as feeds of langurs and the most preferred types of feed are Gita susu (Willughbeia coriacea), Merepat (unidentified), and Karet (Hevea brasiliensis). The most preferred feed compositions consisted of leaves (50%), fruits (30%), and seeds (20%). The most frequently utilized stratum for activities was stratum C (70,49%) and B (27.87%). The highest daily activities were categorized into three parts of time, the morning was dominated by social (44,26%), the afternoon was dominated by rest (59,7 7%), and the evening was dominated by social (73,68%). The highest social activities shown by three colored langurs were agonistic (48,48%), followed by vocalization (39,39%), playing (10,61%), exploring (1,52%), and sexual (0%).
INDIGENOUS BACILLUS SPECIES ISOLATED FROM AEDES AEGYPTI LARVAE: ISOLATION, LARVICIDAL TOXICITY SCREENING, PHENOTYPIC CHARACTERIZATION, AND MOLECULAR IDENTIFICATION Salamun; Rizky Danang Susetyo; Hakimatul Husniyah; Almando Geraldi; Ni’matuzahroh; Fatimah; Farah Aisyah Nafidiastri; Nabilatun Nisa’; Muhammad Fath Alhaqqi Sanis Salamy
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 30 No. 2 (2023): BIOTROPIA Vol. 30 No. 2 August 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1938

Abstract

Vector-borne diseases transmitted by mosquitoes are considered a significant public health problem worldwide. Aedes aegypti is one of the mosquito species responsible for transmitting these diseases. One environmentally friendly method of vector control is the use of microbial agents such as Bacillus species. This study aimed to explore investigate indigenous entomopathogenic bacteria of Bacillus species isolated from A. aegypti larvae. Larvae samples were collected from breeding sites of A. aegypti. All isolates underwent screening and affirmation confirmation tests to assess their larvicidal toxicity against A. aegypti larvae. Phenotypic characterizations and molecular identifications were conducted to determine the species of the Bacillus isolates based on similarity index and percent identity (%ID). Phylogenetic trees were used to compare the isolates with other Bacillus species. The results revealed 120 isolates of Bacillus species from A. aegypti larvae samples. Among them, three isolates (LS3.3, LS9.1, and LSD4.2) exhibited the highest larvicidal toxicity in the confirmation test, resulting in larval mortality rates of 100%, 96.7%, and 100%, respectively, after 48 hours of exposure. Molecular identifications, showed that LSD4.2 had a 99.16% ID with Bacillus velezensis, LS3.3 had a 98.22% ID with Bacillus mojavensis, and LS9.1 had a 99.93% ID with Bacillus subtilis. These three bacteria from the Bacillus genus have been reported to offer significant benefits to humans.
FURTHER STUDY ON TWO SPECIES OF LOACH FISHES (Cypriniformes: Nemacheilidae: Nemacheilus) BASED ON MORPHOLOGY AND MOLECULAR DATA Dwi Anggorowati Rahayu; Sunu Kuntjoro; Widowati Budijastuti; Winarsih Winarsih; Reni Ambarwati; Endik Deni Nugroho; Abdul Basith; Nia Kurniawan; Haryono Haryono
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.2.1942

Abstract

The identities of two local loaches, Nemacheilus chrysolaimos (Valenciennes, 1846) and N. fasciatus (Valenciennes, 1846) from six rivers, were obtained through a comprehensive examination of their morphology and molecular characteristics in Biltar Regency, East Java, Indonesia. Therefore, this study identified Nemacheilus spp. from Blitar based on morphology and partial sequence of COI. The meristic data obtained for N. chrysolaimos included DII. 7–8 (dorsal fin), AI. 3–5 (anal fin), PI. 9 (pectoral fin), VI. 6–7 (ventral fin), and C. 17 (caudal fin). On the other hand, N. fasciatus exhibited the following meristic data, namely D II 7–8 (dorsal fin), AI. 6 (anal fin), PI. 9–10 (pectoral fin), VI. 6–7 (ventral fin), and C. 17 (caudal fin). A significant difference was observed in the morphometric characteristics of N. fasciatus across various sampling sites, as determined by the Kruskal-Wallis Test. Furthermore, the nucleotide base composition sequences of Nemacheilus spp. consisted of Thiamine (T), Cytosine (C), Adenine (A), and Guanine (G) with a mean of 29.565%, 32.023%, 23.88%, and 16.244%. Maximum Likelihood (ML) and Minimum Evolution (ME) phylogenetic analysis was also conducted using the Kimura 2 Parameter model to establish two major clades on Nemacheilus spp. and one out-group significantly different from the Nemacheilus spp. The results showed that these major clades exhibited a close relationship at 100% bootstrap support and were grouped under the genus Nemacheilus. The study on Nemacheilus spp. from the Blitar locality differentiated COI sequences between N. fasciatus and N. chrysolaimos. Additionally, N. chrysolaimos, as inferred from reference sequences, was identified as the ancestral species to N. chrysolaimos MZB 26540 and MZB 26539. ABGD analyses, employing a prior maximal distance of 0.025, also indicated the separation of these species into distinct partitions. The integration of morphology and genetic data for Nemacheilus spp. should provide valuable insights for future genetic population studies and conservation initiatives.
CARBON SEQUESTRATION FOR AGROSILVICULTURE AGROFORESTRY PRACTICES: PRELIMINARY RESULTS FROM THREE INVESTIGATED VILLAGES IN UTTARADIT PROVINCE, NORTHERN, THAILAND podong, chattanong; Khamfong, Krissana; Noinamsai, Supawadee; Mhon-ing, Sukanya
BIOTROPIA Vol. 31 No. 2 (2024): BIOTROPIA Vol. 31 No. 2 August 2024
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.2.1741

Abstract

ARTICLE HIGLIGHTS- Agroforestry boosts carbon storage, reducing greenhouse gas emissions significantly.- Diverse tree-based farming enhances biodiversity, soil health, and climate resilience.- Carbon sequestration in agroforestry supports sustainable agriculture and environmental balance.- Agroforestry practices mitigate climate change by storing carbon in trees and soil.- Combining trees with crops provides multiple ecological and economic benefits.ABSTRACTOne of the processes for compensating greenhouse gas emissions is atmospheric carbon removal and storage in the terrestrial biosphere. Agricultural systems to which trees are returned for careful management alongside crops and animals are thought to be substantial CO2 sinks. People are increasingly realizing the importance of agroforestry because it is good for the environment and farming. In this study, total carbon pools from the aboveground biomass carbon (ABGC), forest floor carbon (FFC), and soil organic carbon (SOC) were investigated and carbon storage data for some agroforestry practices native to Uttaradit in northern Thailand were analyzed. The role of these carbon pools in reducing CO2 concentrations in the atmosphere was also discussed. The results showed differences in the total carbon stock sourced from traditional agroforestry (TAF), applied agroforestry (AAF), and developed agroforestry (DAF). The total carbon store (ABGC + TFFC + SOC) of TAF, AAF, and DAF was 267.05 Mg C/ha, 226.48 Mg C/ha, and 324.70 Mg C/ha, respectively. SOC contributed 47.64%, 54.26%, and 44.81% and ABGC contributed 22.75%, 19.79%, and 23.90% to the total carbon stock in TAF, AAF, and DAF, respectively. The CO2 adsorption was 979.27 Mg CO2/ha, 830.50 Mg CO2/ha, and 1,190.6 Mg CO2/ha in TAF, AAF, and DAF, respectively. It is clear that agroforestry systems serve as carbon sinks in terrestrial ecosystems. Although the comparison of agroforestry practices and other land use types is important for carbon mitigation and the implementation of the “Land Use, Land Use Change, and Forestry” concept for CO2 sinks, it is also crucial to compare the potential of carbon sequestration in different CO2 pools.
POST-SIEGE GENOTOXIC HAZARDS IN LAKE LANAO, PHILIPPINES BY MICRONUCLEUS ASSAY Fema Abamo; Ed Lucille May Ferranco; Annabella Villarino
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
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Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.3.1812

Abstract

Massive war pollutants brought by Marawi Siege in the Philippines have contaminated the city environs and the surrounding ancient Lake Lanao. Munition residues including heavy metals are reportedly genotoxic hence this study was conducted to determine the post-siege genotoxic hazards posed by the munition pollutants through micronucleus (MN) assay on the slow-moving edible gastropod snails Vivipara angularis Muller (locally known as “suso”) thriving in the lake. MN, a biomarker of genotoxicity was examined and counted in the hemocytes of exposed juvenile and adult snails. Results revealed that MN frequencies (no. of MN/1000 hemocytes) were significantly higher in snails sampled in Lake Lanao lakeshores than in the reference site Lake Dapao. Among adult samples, there was a decreasing trend of MN frequencies with increasing distance from lakeshore fronting warzone ‘ground zero’ where the battle was heaviest (site A) to sampling sites away from it: sites B, C, and D (Lake Dapao) which are 8.15 km, 24.41 km, and 34.45 km, respectively. Moreover, varied patterns of micronucleation were observed between age groups and sites, i.e., in all sites except C, adults had greater MN counts than juveniles which were significant in site A only. Unexpectedly juveniles displayed significantly high MN counts than adults in site C. The elevated MN frequencies in the snail hemocytes exposed to war pollution could be attributed to genotoxic munition residues eroded and washed into the lake water. Moreover, heavy metals which are common components of weaponries were also detected in the snail muscles, although at concentrations within safe levels but continued consumption may be cautioned to avoid biomagnification. Other genotoxins must be present in site C other than munition residues predisposing the juvenile snails. The results are baseline data on the MN frequencies in V. angularis exposed to war pollutants in Lake Lanao which need further investigation. Post-siege genotoxic hazards in the lake by MN assay cannot be ignored, thus local leaders must be informed of the results for possible intervention to protect the health and well-being of the community.
RELATIONSHIP BETWEEN RAINFALL AND LAND COVER ON THE NUMBER OF HOTSPOTS IN LORE LINDU NATIONAL PARK Fadjri Maarif; Cesar Andi Mappatoba
BIOTROPIA Vol. 31 No. 1 (2024): BIOTROPIA Vol. 31 No. 1 April 2024
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2024.31.1.1839

Abstract

Forest and land fires in Indonesia need concern in handling it, specifically in conservation areas. Lore Lindu National Park (TNLL) is a conservation area that plays a role in preserving endemic plants and animals and their habitats. Research on the factors that influence forest fires in TNLL needs to be carried out to protect and prevent the risk of forest fires to protect the ecosystem. This study aims to analyze the relationship between rainfall and land cover on the number of hotspots as an indicator of forest fires in TNLL in 2017-2021. Thus, preventive strategies can be carried out as early as possible to prevent forest fires. This research was conducted by analyzing spatially and statistically 2017-2021 rainfall data in Sigi and Poso Regencies, hotspot data from the TERRA/AQUA, SNPP, and MODIS-NASA satellite in 2017-2021 in TNLL, and TNLL land cover data. In statistical analysis, rainfall data for hotspots was analyzed using Bivariate Pearson, and land cover data for hotspots was analyzed spatially using ArcMap. The results showed 55 hotspots in TNLL from 2017-2021. The Bivariate Pearson correlation test results between rainfall and hotspots are -0.028. The relationship between rainfall and hotspots shows a non-directional correlation. The lower the rainfall intensity, the more hotspots are found. Spatially, the highest number of hotspots occurred in areas with the land cover of secondary dryland forest types, with a total of 29 spots.
Estimation of Aboveground Forest Biomass and Carbon Storage of Bangladesh Ajoy Mojumder; Md Sahadat Hossain; Timothy A Volk
BIOTROPIA Vol. 30 No. 3 (2023): BIOTROPIA Vol. 30 No. 3 December 2023
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2023.30.3.1858

Abstract

Forest biomass helps mitigate climate change impacts through sequestration of atmospheric carbon dioxide and potentially storing it for long periods of time. Deforestation and timber harvesting cause the reduction of forest biomass resulting in the reduced carbon sequestration capacity and alterednatural balance of forest ecosystems. We used remote sensing and GIS tools in the four important forest cover zones within five districts of Bangladesh to compare the aboveground forest biomass (AGB) changes between 2014 and 2020. We found an increased AGB in Sundarban mangrove forest from 89.73 Mg.h-1 in 2014 to 90.76 Mg.h-1 in 2020. Similarly, the AGB was found to be increased for Ukhiya hill forest from 7.89 Mg.h-1 in 2014 to 8.89 Mg.h-1 in 2020. Contrary, the average AGB content in Nijhum Dwip mangrove forest decreased from 44.36 Mg.h-1 in 2014 to 37.46 Mg.h-1 in 2020. The average AGB of Modhupur decidious forest also found to be decreased from 110.01 Mg.h-1 in 2014 to 107.22 Mg.h-1 in 2020. The decreased biomass contents could be attributed to anthropgenic factors as indicated by the presence of human activities and this informatin will be helpful for forest restoration and management in Bangladesh.

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