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BIOTROPIA - The Southeast Asian Journal of Tropical Biology
Published by Southeast Asian Regional Centre for Tropical Biology
ISSN : 02156334     EISSN : 1907770X     DOI : http://dx.doi.org/10.11598/btb
Core Subject : Health, Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Immunology & microbiology Veterinary
BIOTROPIA, The Southeast Asian Journal of Tropical Biology, is a scientific publication of the Southeast Asian Ministers of Education Organization (SEAMEO) – Southeast Asian Regional Center for Tropical Biology (BIOTROP). It publishes articles in the broad areas of tropical ecosystems and environmental impacts, biodiversity conservation and sustainable development and biotechnology.
Arjuna Subject : Ilmu Pertanian dan Biologi (Semua) - Ilmu Pertanian dan Biologi (Lain-Lain)
Articles 520 Documents
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Intestinal Histology of the Grouper Epinephelus lanceolatus fuscogutattus Administered With Simplicia Papaya Rostika, Rita; Yustiati, Ayu; Rizal, Achmad; Rudyansyah, Mochammad; Dewanti, Lantun Paradhita
BIOTROPIA Vol. 26 No. 3 (2019): BIOTROPIA Vol. 26 No. 3 December 2019
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2019.26.3.1107

Abstract

The grouper (Epinephelus sp.) is a marine fish species that is widely cultivated commercially for hatchery and grow–out purposes and shows a promising production prospect. The structure and development of fish intestines are influenced by internal and external factors, such as water quality, feed quality, and feed quantity. However, even though the protein content in the diet is relatively high, the growth performance of Epinephelus lanceolatus × Epinephelus fuscoguttatus remains low. This study aimed to determine the effect of papaya simplicia supplementation on grouper growth, specifically absolute weight gain and protein efficiency ratio. The experiment used a Completely Randomized Design with five treatments and three replications (A: papaya simplicia 5%, B: 3.75%, C: 2.5%, D: 1.25%, and E: 0% as the control). Groupers were reared in floating net cages in Pangandaran Regency, Indonesia. Supplementation of papaya simplicia at 3.75% and 5% increased the number of necrotic cells (169 and 183 cells, respectively), as well as the number of goblet cells. The addition of papaya simplicia at 5%, 3.75%, and 2.5% increased the absolute weight gain to 161.36 g, 152.19 g, and 152.09 g, respectively. Supplementation at 5% and 3.75% also increased the protein efficiency ratio to 3.18% and 3.19%, respectively.
Effect of Powder and Liquid Preparations of Probiotics on White Shrimp (Litopenaeus vannamei) Growth Performance Safitri, Ratu; Andriani, Yuli; Sunendi, Sunendi; Iskandar, Iskandar; Buwono, Ibnu Dwi
BIOTROPIA Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.0.0.0.1124

Abstract

Indonesia is the second largest supplier of white shrimp (Litopenaeus vannamei, Boone 1931) in the USA market. Hence, the need for its sustainable production and improved growth. Probiotics, among others, are known for their growth enhancing attributes. Therefore, this study was conducted to determine the effects of powder and liquid probiotics on the growth of white shrimps at the Minaloka Jaya shrimp ponds, Grabag District, Purwerojo Regency, Central Java. The shrimps were cultivated for 60 days and applied with three probiotic treatments, namely commercial liquid probiotics with dosage of 10 mL/kg feed, powder probiotics with dosage of 10 g/kg feed and liquid probiotic with dosage of 10 mL/kg feed. Each probiotic preparation was administered four times a day to over 150,000 vannamei shrimps which were cultured in a semi-intensive system. Probiotics in powder and liquid forms contain Lactobacillus fermentum, L acidophilus, L. plantarum, L, curvatus, Bacillus licheniformis, B. subtilis, and B. polimyxa. B. megaterium, B. coagulans, Pseudomonasputida, Nitrosomonas sp. and Nitrobacter sp. Using the Randomized Block Design (RBD), the three treatments were replicated five times. The application of probiotics in both powder and liquid forms had increased the growth yield of the vannamei shrimp. However, the powder probiotic had shown better growth performance than the commercial liquid probiotics and liquid preparation of probiotics. Probiotic powder form provides a specific growth rate (SGR) of 8.18%, absolute body length of 9.68 cm, absolute biomass of 6.78 g, and feed conversion ratio (FCR) of 1.93.
Growth Performance of Dipterocarp Species Planted on Abandoned Mining Area in Southern Thailand Wongprom, Jetsada
BIOTROPIA Vol. 27 No. 2 (2020): BIOTROPIA Vol. 27 No. 2 August 2020
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2020.27.2.1173

Abstract

Dominant Dipterocarp trees hold a significant importance in the ecology and economics of the declining tropical forests of Asia. Of equal importance is the restoration of these Dipterocarp forest using the technique of matching species with silvicultural practices. The study aimed to investigate the effect of the Acacia mangium nurse trees on the survival and growth of six Dipterocarp species planted on abandoned mining areas in the Phangnga Forestry Research Station, Thailand, namely; Dipterocarpus alatus Roxb., Dipterocarpus gracilis Blume, Hopea odorata Roxb., Shorea gratissima (Wall. ex Kurz) Dyer, Shorea roxburghii G. Don, and Parashorea stellata Kurz. The approximately 1.5-year-old Dipterocarp seedlings were planted at a 6-year-old A. mangium plantation cover and at open plots. The survival rate, diameter at root collar (D0), total height (H) and the relative growth rate (RGR) of D0 and H of the seedlings were compared. Soil samples at the open and the A. mangium plots were collected and its physical and chemical properties were analyzed. The results indicated that the survival rates of the Dipterocarps planted at the A. mangium plot were higher than those at the open plots. The survival rates (75-100%) of the 1 to 3-year-old D. alatus, H. odorata, S. gratissima, S. roxburghii, and P. stellata were relatively high at the A. mangium plot, but not for D. gracilis. The D0 of S. roxburghii, D. alatus, H. odorata, and P. stellata were higher at the A. mangium plot. However, the D0 and H of S. roxburghii, D. alatus, and H. odorata at the open plot were high and similar to that of the A. mangium plot. RGRD0 and RGRH of S. roxburghii, D. alatus, and H. odorata were high both at the A. mangium and the open plots. Generally, the Dipterocarp seedlings were growing better under the A. mangium nurse trees, thus suggesting the possibility of their improved survival and growth in mined out areas. Moreover, the findings also suggest that S. roxburghii, D. alatus, and H. odorata can be planted at open areas with poor soil conditions and extreme environments. Lastly, thinning interventions are also needed to improve the growth of Dipterocarp trees.
SEA RANCHING OF Holothuria atra: STOCKING DENSITY AND TIME Retno Hartati; Ambariyanto Ambariyanto; Muhammad Zainuri; Widianingsih Widianingsih
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 28 No. 2 (2021): BIOTROPIA Vol.28 No.2, Agustus 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.0.0.0.1180

Abstract

Strong market demand and uncontrolled exploitation and/or the inadequate management of fisheries have caused many stocks of sea cucumbers to be overexploited. One suggested effort to overcome this problem is sea ranching. Stocking density is the most important consideration in sea cucumber rearing; therefore, this present work is aimed at elucidating the best stocking density for sea ranching of Holothuria atra. H. atra was taken from the Panjang Island, Jepara waters and reared in bottom cages in Teluk Awur waters, Jepara with a density of 30, 20, or 10 individuals per cage measuring 2 m × 2 m × 1.8 m (with bottom area of 4 m2). Stocking times of H. atra were at the initial time of cage installation, the second and the third months after installation. Bottom sediment characteristics (i.e., chlorophyll a, b, phaeophytin, and total carotene) of the sea cucumber habitat and water quality in the cages were measured monthly during the study. The results showed that growth of H. atra fluctuated; low stocking density yielded a higher weight gain than high stocking density did. The highest weight gain was present in the density of 10 individuals/cage in the second stocking month. The highest survival rate of H. atra was seen in the condition of 30 individuals/cage (93%) at the third stocking month, which means that these sea cucumbers were only reared for three months. The highest mortality occurred at a density of 20 individuals/cage with the survival rate being low (45%) at the first stocking time or in the fifth month of rearing. There was fission evidence among H. atra reared in the cages, resulting in smaller organisms. Among the water quality parameters, the concentration of chlorophyll a, b, phaeophytin, and carotene in the sediment fluctuated according to the time of sea cucumber rearing caused by their feeding and bioturbation. The study results suggested to stock H. atra at low density during the second stocking month to get higher growth.
ENVIRONMENTAL STRESS ON THE REPRODUCTION OF NON-HUMAN PRIMATES Mashitah Shikh ShikhMaidin
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 28 No. 2 (2021): BIOTROPIA Vol.28 No.2, Agustus 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.2.1296

Abstract

The aim of this review paper is to present some aspects of environmental stress, such as climate change and food limitation that could affect nonhuman primate population due to poor reproductive performance. The International Union for Conservation of Nature (IUCN) lists more than a third of world’s primates are critically endangered or vulnerable. Nonhuman primates, which are the closest biological relative to humans, are threatened with extinction from human activities and environmental stress. Deforestation is the main problem that intercalates with climate change. Either, indirectly or directly, those extinction factors are able to interrupt the physiological basis of reproduction in nonhuman primates. Many research on other species showed that high temperature or heat stress has a negative effect on reproductive performance by interfering the hypothalamic-pituitary-gonadal axis. Therefore, to conserve and prolong the survivability and sustainability of nonhuman primates in captive and wild nature, more works and research have to be done.
Understanding Natural Regeneration in Burned Tropical Peatland: A Strategy to Accelerate the Forest Recovery Process Dwi Puji Lestari; Taryono Darusman; Fransiskus Harsanto; Desra Arriyadi; Ginanjar Ginanjar
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 28 No. 3 (2021): BIOTROPIA Vol. 28 No. 3 December 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.3.1330

Abstract

The 2015’s massive forest fires have left large areas of burned peatlands that need to be restored, demanding substantial number of resources. To understand natural regeneration on burned peatland and how planting might accelerate its recovery process, we measured recruitment on burned peatland with different fire frequency. Three transects were established each consisting of five 20x20 m2plots developed at a 30 m interval. Our finding suggests that the absence of remnant trees due to frequent or severe fires does not always impede the emergence of new recruitments, although diversity of forest regrowth is likely to be affected by its proximity to forest remnant. The floristic composition also showed a domination of pioneer species, giving evidence that forest recovery is initiated. We conclude that to support the recovery process through planting activity, the successional stage of the designated sites should be determined first. During the early phase of succession, stand initiation should be addressed first by the colonization of rapidly recruiting species to ensure continuous regeneration. Therefore, the common planting method on large areas with mixed climax-high valuable trees is unbeneficial unless the restoration sites have reached the later stages of succession.
Effectiveness of indigenous endomycorrhizal biofertilizer prototype on organic salak (Salacca zalacca) plantations and its effect on nutrient and carbohydrate content of leaves I Nyoman - Rai; I Ketut - Suada; I Wayan - Wiraatmaja; Ni Komang - Alit Astiari
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 28 No. 3 (2021): BIOTROPIA Vol. 28 No. 3 December 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.3.1333

Abstract

Organically cultivated salak (Salacca zalacca) on dry land had limited production in Bali. Typically, the fertilization was carried out using the leaves litter or other organic fertilizer because the fertility of the soil was low for salak plantations, and the nutrition for the tree was lacking. The present study aimed to analyze the effectiveness of indigenous endomycorrhizal biofertilizer prototype on salak plantations and its effect on the nutrient and total carbohydrate content of the leaves. The study used a randomized block design with nine replicates conducted at Sibetan village, Bebandem district, Karangasem regency, and Bali province. The treatment consisted of 3 levels, i.e., fertilization with leaf litters only as the farmers’ way/control (C), fertilization with indigenous endomycorrhizae biofertilizer prototype (P), and combination fertilization with leaf litters and indigenous endomycorrhizae biofertilizer prototype (PM). The spores of indigenous endomycorrhizae were used for making biofertilizer prototype isolated from soil and root samples in salak producing areas, i.e. Sibetan village. The results showed that P and CP significantly increases the chlorophyll content of the leaf, relative water content of the leaves, and number and weight of fruit per tree in comparison to C. Treatments P and CP also improved the fruit quality by increasing of the sweetness and weight per fruit. Thus, the indigenous endomycorrhizae biofertilizers prototype has a positive effect on water uptake and nutrient absorption as indicated by high N and P on leaf tissue and high total sugar, R-sugar, and sucrose content of the leaves. Keywords: biofertilizer, endomycorrhizae, organic, prototype, salak
Overexpression of Gα Gene Increases Growth and Hyposaline Tolerance in Kappaphycus alvarezii Transgenic Plantlets Erina Sulistiani
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 28 No. 3 (2021): BIOTROPIA Vol. 28 No. 3 December 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.3.1047

Abstract

ABSTRACT G proteins are membrane proteins that play roles in signal transduction in living organisms. They consist of α, β and γ subunits. The G protein α subunit (Gα) plays a role in plant resistance toward biotic and abiotic environmental stresses. Transgenic plantlets of Kappaphycus alvarezii carrying the Gα gene (derived from soybean) have been successfully obtained through Agrobacterium tumefaciens-mediated transformation. The present study aimed to: 1. compare the growth of non-transgenic and transgenic plantlets of K. alvarezii in vitro using Provasoli enriched seawater (PES) medium with normal salinity and hyposalinity and 2. analyze the expression level of the Gα gene in transgenic plantlets using quantitative Polymerase Chain Reaction (qPCR). The results showed that all transgenic plantlets (six clones) had significantly higher daily growth rate (DGR, % / d) than that of non-transgenic under the condition of  normal salinity (30 ppt) and hyposalinity (15 and 20 ppt) for 5 weeks of observation. At 15 ppt, transgenic plantlets were more tolerant than non-transgenic ones, as most thalli of transgenic plantlets remained brown in color, whereas most thalli of non-transgenic plantlets were bleached. The results of the qPCR analysis showed that the expression of the Gα gene in transgenic plantlets increased by 6.43 - 8.03 times compared with that of non-transgenic plantlets. The result of Pearson correlation analysis showed that relative expression of Gα gene had a strong correlation, both with DGRs in normal salinity and hyposalinity of transgenic plantlets (correlation coefficient > 0.7). The correlation was linearly positive, where increased expression of the Gα gene was strongly associated with an increase in DGRs.   Keywords:   Gα gene overexpression, hyposaline tolerance, Kappaphycus alvarezii, transgenic plantlet
Assessment of the Quality of Arabica Coffee Beans from Three Processing Methods and Two Types of Packaging Materials Dharmaputra, Okky S.; Ambarwati, Santi; Retnowati, Ina; Nurfadila, Nijma
BIOTROPIA Vol. 28 No. 3 (2021): BIOTROPIA Vol. 28 No. 3 December 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.3.1325

Abstract

In Southeast Asia, Indonesia is the second highest-producing country of coffee beans after Vietnam. Consequently, Indonesia competes with other countries in producing good quality coffee beans. However, not many people have sufficient skills in tackling problems related to the postharvest handling of these coffee beans. The objective of this study was to assess the quality of Arabica coffee (Coffea arabica) beans in terms of moisture content, fungal infection (especially ochratoxin A or OTA producing fungi), OTA contamination, and the taste of the coffee during storage. The three processing methods used were dry, wet, and semi-wet methods. The beans were packed using two types of packaging materials, i.e. Kantong Semar high gas barrier and polypropylene bags (4 kg/bag). They were then stored under warehouse conditions during 4 months of storage. The moisture content of coffee beans processed using the three methods and packed using polypropylene bags was higher than that of coffee beans packed using Kantong Semar high gas barrier; however, it was still lower than the safe moisture content for coffee determined by the Indonesian National Standard (12.5%). Aspergillus niger was found in coffee processed using the three methods and packed using a Kantong Semar high gas barrier. Its population was relatively low (< 0.1 x 10 cfu/g wet basis). Aspergillus ochraceus was found in coffee processed using dry and wet methods at the beginning of storage. Its population was also relatively low (< 0.3 x 10 cfu/g w.b. OTA content was not detected in all coffee samples, because it was lower than the detection limit of the instrument used (< 1.85 ppb). At the beginning of the storage, all coffee samples were dominated by yeast with the population of 1.9 x 102 – 1.2 x 103 cfu/g w.b. The taste of coffee in various treatments during 4 months of storage was still above the total standard score for specialty grade ≥ 80. The highest total score (84) was found in coffee beans processed using a dry method and packed in Kantong Semar high gas barrier. The three processing methods and the two types of packaging materials can be used to maintain the quality of coffee beans during 4 months of storage.   Keywords: Arabica coffee beans, processing methods, quality, types of packaging materials
DIVERSITY OF ENDOPHYTIC FUNGI ASSOCIATED WITH FRUITS AND LEAVES OF TAMARIND (Tamarindusindica L.) BASED O N ITS RIBOSOMAL DNA SEQUENCES Nur Ain Izzati Mohd Zainudin; Nurul Asyiqin Mohd Zaini; Nurul Huwaidah Md Nizam; Dayang Fatin Zafira Awg Zainal Abidin; Nor Izanis Azni Mohd Nazri
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 28 No. 3 (2021): BIOTROPIA Vol. 28 No. 3 December 2021
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2021.28.3.1339

Abstract

Plant-associated microbes are among the important natural resources that abundantly exist in natural environment such as endophytic fungi. The studies on endophytic fungi in medicinal plants have allowed the discovery of numerous fungi species and their hidden potentials. Therefore, this study focused on the isolation and identification of endophytic fungi from several plant parts of tamarind such as leaves and fruits. A total of 69 fungal cultures were successfully isolated and identified into 33 distinct species from 14 genera based on morphological characteristics and internal transcribed spacer (ITS) sequence analysis using a Maximum Likelihood method. There were six different species obtained from the genus Colletotrichum (C. aenigma, C. brevisporum, C. cobbittiense, C. fructicola, C. gloeosporioides and C. siamense), and Diaporthe (D. arecae, D. ceratozamiae, D. phaseolorum, D. pseudomangiferae, D. pseudooculi  and D. pseudophoenicicola), four species of Aspergillus (A. aculeatus, A. carbonarius, A. flavus and A. tubingensis), three species of Curvularia (C. aeria , C. geniculata and C. lunata) and Nigrospora (N. lacticolonia, N. oryzae and N. sphaerica), two species of Lasiodiplodia (L. pseudotheobromae and L. theobromae) and Penicillium (P. rolfsii and P. verruculosum). Other fungal species that were also identified are Botryosphaeria mamane, Fusarium solani, Perenniporia tephropora, Phyllosticta fallopiae, Sarcostroma bisetulatum, Trichoderma asperellum and Xylaria feejeensis. The isolates were grouped into different clades according to their class. In conclusion, endophytic fungi isolated from tamarind plant are diverse and provides an insight into species diversity of endophytic fungi in tamarind.

Page 35 of 52 | Total Record : 520

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