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INDONESIA
Journal of Tropical Biodiversity and Biotechnology
Published by Universitas Gadjah Mada
ISSN : 25409573     EISSN : 25409581     DOI : -
Core Subject : Science, Agriculture, Social,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Environmental Science Immunology & microbiology
Journal of Tropical Biodiversity and Biotechnology (JTBB) is an authoritative source of information concerned with the advancement of tropical biology studies in the Southeast Asia Region. It publishes original scientific work related to a diverse range of fields in tropical biodiversity, functional biology, and biotechnology.
Arjuna Subject : -
Articles 327 Documents
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Profiling of Single Garlic Extract Microencapsulation: Characterization, Antioxidant Activity, and Release Kinetic Lestari, Sri Rahayu; Ghofur, Abdul; Maslikah, Siti Imroatul; Sunaryono, Sunaryono; Rahma, Amalia Nur; Aisyah, Dahniar Nur; Mufidah, Ikfi Nihayatul; Rifqi, Nadiya Dini; Prastita, Nenes; Miasih, Dewi Sekar; Baroroh, Alif Rosyidah El
Journal of Tropical Biodiversity and Biotechnology Vol 8, No 3 (2023): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.79072

Abstract

Single garlic is known to have many benefits as an alternative therapy for various types of metabolic syndrome. The bioactive compounds, allicin and alliin, in garlic are unstable and easily degraded in digestion. Chitosan-alginate microencapsulation is thought to increase stability and protect active compound so its therapeutic effect is more optimal. This study aimed to characterize the microencapsulation chitosan-alginate of single garlic extract (MCA- SGE), as well as to examine the antioxidant activity and kinetic release of MCA-SGE in vitro. The research procedure includes the steps of single garlic extraction, preparation of MCA-SGE, characterization of MCA-SGE (PSA, SEM, and FTIR) as well as biological testing of MCA-SGE through antioxidant activity and kinetic release tests. PSA results showed the mean particle size of MCA-SGE was 439.0 ± 1.9 nm or 0.4 m with a polydispersity index (PDI) value of 0.579 ± 0.046 and a zeta potential value of 15.4 ± 0.3 mV. The SEM results showed that the morphology of MCA-SGE was spherical with a smooth surface and a micrometre size of 0.4 - 0.7 µm. The FTIR results describe a shift in absorption and addition of SGE functional groups after encapsulation. The results of the antioxidant activity test showed the antioxidant activity of MCA-SGE was 65%, while SGE was 55%. The results of the kinetic release showed that more allicin and alliin were released by SGE than MCA-SGE during the 4-hour kinetic release simulation. MCA-SGE has the potential to be used as a drug delivery system with controlled release.
Comparison of Soil Arthropod Diversity and Community Structure in Various Types of Land Cover in Malang Region, East Java, Indonesia Yanuwiadi, Bagyo; Suharjono, Suharjono; Kurniawan, Nia; Fathoni, Muhammad; Nurrofik, Agus; Assiddiqy, Miftah Farid; Shahroni, Abdul Mutholib
Journal of Tropical Biodiversity and Biotechnology Vol 8, No 3 (2023): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.79496

Abstract

Land cover heterogeneity can affect the structure of biodiversity in the supplied niche, so it is necessary to know the taxa community. This study aimed to understand the effect of land cover variation on the diversity and community structure of soil arthropods. The types of habitats used include urban areas, agroforestry, gardens, and natural forests which are determined in the Malang Region, East Java, Indonesia. Hand sorting and hay bait traps were applied in this study to obtain a variety of arthropod soils and the Berlese-Tullgren funnel was used to extract them. As a result, there are 25 families from 15 orders collected based on their ecological roles. The abundance of Philoscidae in sites S1 and S2 (urban green space), Talitridae in site S6 (agroforestry), and Isotomidae in sites S3, S4, and S5 (highland mixed forest) was highest and dominant. Site S7 has the highest diversity (H' = 2.56; 1-D = 0.90; J' = 0.76) even though its family richness is lower. The site S3 counter-site had relatively high taxa richness (TR = 13), but low diversity (H' = 1.02; 1-D = 0.39; J' = 0.16). Based on clustering analysis and NMDS ordination, 3 classifications of habitat types were obtained, namely I (S6 & S7), II (S3, S4 & S5), and III (S1 & S2). Mixed forest habitats contain a more complex diversity of soil arthropods, which can serve as a model for improving the fertility of disturbed ecosystems. 
Mangosteen (Garcinia mangostana L.) Peel Decoction Effect on Embryological Development of Wader Pari Fish Rasbora lateristriata (Bleeker, 1854) Khasanah, Luthfia Uswatun; Paramita, Pradnya; Retnoaji, Bambang
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.80645

Abstract

Mangosteen (Garcinia mangostana L.) is a tropical fruit that has become a sought-after commodity by enthusiasts from various countries, including Indonesia. The active components found in mangosteen peel primarily consist of active xanthone compounds, such as mangostenol, mangostin, mangostino A, mangostino B, tvophylin B, trapezifolixanthone, alpha mangostin, beta mangostin, garcinon B, mangostano, as well as flavonoids epicatechin and gartanin. These compounds exhibit a range of beneficial properties, including anti-inflammatory, antibacterial, antifungal, antihistamine, antidiabetic, anticancer, and more. Consequently, there is significant potential in developing mangosteen peel extract as a valuable ingredient in herbal medicine. However, there is currently no available data on the effects of exposure to mangosteen peel decoction on fish animal models. Therefore, it is essential to investigate the impact of mangosteen peel decoction on wader pari fish (Rasbora lateristriata) embryos. In this study, wader pari embryos were subjected to various concentrations of mangosteen peel decoction (0.5, 1, 5, and 25 µg/mL). The effects on egg hatchability, survival rate (SR), heart rate frequency, and heart morphology of the larvae were meticulously examined using a Leica microscope. The data obtained were subjected to statistical analysis using one-way ANOVA. The findings demonstrated that exposure to mangosteen peel decoction resulted in lower hatching rates and embryonic survival, alongside an increased heart rate frequency. Additionally, the exposed embryos displayed cardiac edema and cardiac bending, particularly at the concentration of 25 µg/mL. In conclusion, the exposure of wader pari fish embryos to mangosteen peel decoction at the concentrations of 25 µg/mL and higher significantly affected the hatching rate, survival rate, and heart rate of R. lateristriata fish larvae. 
Growth Kinetic Modelling of Efficient Anabaena sp. Bioflocculation Rahmawati, Amalia; Rohmawati, Irma; Nurafifah, Istini; Sadewo, Brilian Ryan; Suyono, Eko Agus
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 1 (2024): March
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.82196

Abstract

Bioflocculation is a harvesting technique that employs flocculant agents such as bacteria and microalgae. The benefit is the absence of a chemical-added flocculant. Because bacteria need a particular medium, microalgae flocculant agents are more effective. This study used Anabaena sp. to collect fat, protein, and carbohydrates from the Glagah consortium. Three replications of those microalgae were grown in 300 ml of Bold Basal Medium culture for eight days. On the day of harvest, flocculant microalgae (Anabaena sp.) and non-flocculant microalgae (Glagah) were combined to accomplish flocculation. On the day of harvest, parameters were observed by combining Anabaena sp. with the Glagah consortium in the ratios 1: 1, 0.5: 1, and 0.25: 1. There were three times of each parameter test. Utilizing a wavelength of 750 nm, the proportion of precipitation was calculated spectrophotometrically. Bligh and Dyer were used to measure the lipids. The phenol sulfate technique was used to calculate the amount of carbohydrates. By employing the Bradford method, proteins were quantified. Biofocculation percentages and carbohydrate content were optimum on a ratio of 0.25:1. Lipid and protein content were optimum on a ratio of 1:1.
A Mini Review on Analysis of Potential Antibacterial Activity of Symbiotic Bacteria from Indonesian Freshwater Sponge: An Unexplored and A Hidden Potency Setiawan, Edwin; Hermanto, Michael Einstein; Abdulgani, Nurlita; Prasetyo, Endry Nugroho; Riani, Catur; Wulandari, Dyah; Budiharjo, Anto
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 1 (2024): March
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.82682

Abstract

Marine sponges have been investigated as potential bioresources because of their symbiotic relationship with microbes such as Actinobacteria that produce antibacterial substances. In contrast, a group of sponges, that inhabits freshwater environments called freshwater sponges (Order Spongillida Manconi & Pronzato, 2002) and consists of only one percent among all of the sponges’ species (Phylum Porifera Grant, 1836), has  not yet intensively examined.  For this reason, we screened, determined, evaluated, and reviewed by examining several databases in Scopus, Pub Med, and Google Scholar related to potential aspects of symbiotic bacteria and their antibacterial substances that can be further utilised  and developed into synthesised  antibacterial compounds, based on published metagenomic data of symbiotic bacteria in freshwater sponges. At the same time, we compared a composition of those freshwater symbionts to marine sponges’ symbionts whether those possess a similar composition or not. Moreover, a current report and a revisit study of freshwater sponges in East Java, initiate further direction on mapping of those symbiotic bacteria from Indonesia that can be nominated as potential groups possessing antibacterial properties. 
Species Composition and Inshore Migration of the Tropical Glass Eels (Anguilla spp.) Recruiting to the Jali River, Purworejo Regency Indrawati, Ayuningtyas; Ibrahim, Putri Sapira; Yalindua, Fione Yukita; Kurniawan, Wanwan; Aisyah, Siti; Anggoro, Sutrisno; Saputra, Suradi Wijaya
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.82880

Abstract

Purworejo Regency is located in the south coast of Java where rivers flow into the Indian Ocean. The Jali River in Purworejo becomes a migration route for eels where juvenile eels (glass eels) move from the ocean to freshwater passing through the estuary. During migration, glass eels will make efforts to survive, one of which is to manage their osmotic pressure (osmolarity). With regards to those, a study on the upstream migration of glass eels in Jali River was carried out. Glass eels samplings were conducted using hand-held lift nets at the new moon phase, from 20:00 pm to 4:00 am. Sampling stations included the estuary, a branch river, and below the dam. The osmolarity of both glass eels and media (river water) were measured. Furthermore, the chemical and physical parameters of the waters as the natural habitat for glass eels were also measured. Glass eel samples were then identified to species level. The results showed that glass eels entering the Jali River consisted of Anguilla bicolor bicolor and Anguilla nebulosa nebulosa with the former being the most common. Total length of glass eels ranged between 44.10 to 69.70 mm with total weights 0.08 to 0.54 g. Glass eel migration has a close relation with surface current and tide. The osmotic work level (OWL) of glass eels approaches 0.34 mOsm/l H2O which is close to iso-osmotic. This happened at salinity 0 o/oo so that the glass eels migrate to fresh water which has a lower salinity to achieve iso-osmotic condition. 
Chrysin Inhibits Indonesian Serotype Foot-and-Mouth-Disease Virus Replication: Insights from DFT, Molecular Docking and Dynamics Analyses Susilo, Agus; Cahyati, Miftakhul; Nurjannah, Nurjannah; Pranowo, Dodyk; Hermanto, Feri Eko; Primandasari, Elma Putri
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 1 (2024): March
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.83140

Abstract

Chrysin, a predominant compound in Propolis, possesses diverse bioactivities, including antiviral properties. However, its antiviral efficacy against the Indonesian Foot-and-Mouth Disease Virus (FMDV) serotype remains unexplored. This study investigates Chrysin's inhibitory potential against FMDV Indonesian serotype by targeting the 3C Protease (3CP), a vital enzyme for viral replication. Multiple sequence alignment was used to reveal unique characteristics of the Indonesian serotype's 3CP compared to global serotypes. Density Functional Theory (DFT) calculations assessed Chrysin's interaction with 3CP based on electronegativity. Molecular docking and molecular dynamics analyses evaluated Chrysin's inhibitory activity against 3CP, using homology modeling for the Indonesian serotype's 3CP structure. Luteolin, a known FMDV 3CP inhibitor with a similar structure to Chrysin, served as a reference. Results showed distinct 3CP sequences in the Indonesian serotype compared to O serotypes and others. Chrysin exhibited potential electron-donor activity with lower HOMO and LUMO values than Luteolin, but they had similar energy gaps, i.e., 4.016 and 4.044 eV, respectively. Molecular docking indicated similar binding affinities, with Chrysin (-6.365 kcal/mol) and Luteolin (-6.864 kcal/mol) bound to active site residues. Molecular dynamics analysis demonstrated stable 3CP-Chrysin and 3CP-Luteolin complexes, with minor differences in Radius of gyration (Rg) and Root-Mean-Square Fluctuation (RMSF) below 1 Å. From the ligand stability point of view, Chrysin had comparable stability with Luteolin. However, Chrysin formed fewer hydrogen bonds and displayed greater free-binding energy than Luteolin during simulation periods. These findings suggest that Chrysin holds promise as an inhibitor of the Indonesian serotype's FMDV 3C Protease. 
Seed Conservation of Anaxagorea luzonensis A. Gray (Annonaceae) Through Storage Behaviour and Morphology Lestari, Dewi Ayu; Faya, Ananda Kautsar Nadia
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 2 (2024): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.83147

Abstract

Fruits and seeds morphological traits and seed storage behaviour of Anaxagorea luzonensis are important for seed and plant conservation. Fruits and seeds characterization using a digital microscope and morphometry method. Seed storage behaviour was determined using 100-seed test method. The findings revealed that the colour of A. luzonensis fruit did not change and A. luzonensis seed was glossy, brittle, black in colour, 9.05 x 5.89 x 2.93 mm sized and oval. The seeds are desiccation-tolerant and are categorized as orthodox seeds. These results can become the findings of A. luzonensis seed storage behaviour, because information about it never existed before. Knowing the seed storage behaviour and seed morphology of A. luzonensis is essential so that the recommendation of conservation efforts at PBG in the future are covering the fruit, modifying the environment, breaking dormant seeds, vegetative propagation, and preserving seeds. 
Diversity of Santigi (Pemphis acidula J.R.Forst. & G.Forst.), A Mangrove Association in Tomini Bay, Sulawesi, Indonesia Baderan, Dewi Wahyuni K.; Rahim, Sukirman; Angio, Melisnawati H.; Akbar, Muh. Nur; Jannah, Magfirahtul; Retnowati, Yuliana; Utina, Ramli
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 1 (2024): March
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.83889

Abstract

Pemphis acidula is a wild plant in rocky or sandy coastal areas and mangrove ecosystems. Different geographic characteristics may affect plant adaptability and have an impact on the emergence of various genotypes. This study was performed to reveal the phenetic relationship and genetic variation of P. acidula in 3 different areas in Tomini Bay, Gorontalo Province, Indonesia. We took 3 samples from each location and analysed them using 14 morphological characters and molecular approaches based on ISSR markers and ITS gene. The results showed that P. acidula on Olele had bigger sizes in some morphological features compared to the plants in other study areas. The phenetic analysis showed that P. acidula at Biluhu and Dulanga were more closely related, although P. acidula at the 3 locations had 100% similarity. Genetic variation analysis showed the highest genetic similarity based on ISSR markers was found in Dulanga and Biluhu samples (76.8%). Phylogenetic based on ITS gene revealed that Olele samples were in the same clade with P. acidula accession from GenBank (genetic distance 0-0.19%), while Biluhu samples were a sister group (genetic distance 24.97-25.03%) even though their percentage identity corresponds to P. acidula (81.34%). Plant adaptation to different habitat conditions may affect the genetic diversity of P. acidula. 
Daily Activity and Honey Production Patterns of Tetragonula laeviceps Smith (Hymenoptera: Apidae) During the Wet and Dry Seasons Suhri, Andi Gita Maulidyah Indraswari; Retnoaji, Bambang; Mustamin, Yusdar; Kahono, Sih
Journal of Tropical Biodiversity and Biotechnology Vol 9, No 4 (2024): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.84083

Abstract

Honey production by stingless bees is closely related to the foraging activities of worker bees, particularly nectar foraging. The urgency of this study stems from the community's need for adequate understanding and information on honey production which can vary due to various factors, such as forage and season. The purpose of this study was to determine the extent to which foraging activity affects the amount of honey produced by T. laeviceps during the rainy and dry seasons. The focal sampling method was used to observe foraging behaviour and the acetolysis method was used to observe pollen. The abiotic factors were measured through direct observation. Honey production was observed as a result of foraging behaviour and variations in abiotic factors.  In SPSS v27 software, data from foraging behaviour observations were analysed using one-way ANOVA followed by Tukey's test with 95% confidence level and interpreted in tables and figures. Multiple linear regressions and Pearson’s correlations were used to test the relationship between abiotic variables and bee return to hive behaviour. All honey volume data were collected, averaged, and evaluated using bar charts. Based on these results, the amount of honey produced by T. laevicepsin the dry season was significantly higher than that produced during the wet season. This was because the number of bees actively foraging was also higher in the dry season (June-August) which was strongly influenced by temperature and light intensity (p > 0.05). In addition, the number of flowering plants available for harvest during the dry season was higher than that during the rainy season. The results of this study can be used as a reference by beekeepers to determine the appropriate time to harvest honey. Information on the types of forage plants identified in this study can provide information on bee preferences in making choices related to forage plants.

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