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All Journal HAYATI Journal of Biosciences MANAJEMEN HUTAN TROPIKA Journal of Tropical Forest Management Jurnal Ilmu Pertanian Indonesia ACTA VETERINARIA INDONESIANA Jurnal Primatologi Indonesia Jurnal Sain Veteriner Buletin Peternakan Jurnal Veteriner BIOTROPIA - The Southeast Asian Journal of Tropical Biology Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Jurnal Penelitian Hutan dan Konservasi Alam Jurnal Sumberdaya Hayati Journal of Tropical Biodiversity and Biotechnology ZOO INDONESIA Biosaintifika: Journal of Biology & Biology Education AL-HAYAT: Journal of Biology and Applied Biology Konservasi Hayati Zoo Indonesia Proceeding Biology Education Conference Makara Journal of Science

DYAH PERWITASARI -FARAJALLAH

Departemen Biologi, Fakultas Matematika Dan Ilmu Pengetahuan Alam, Institut Pertanian Bogor, Kampus IPB Darmaga, Bogor 16680 Pusat Studi Satwa Primata Institut Pertanian Bogor, Jl. Lodaya II/5, Bogor 16151

Author-ID : 209262

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Environmental Science Immunology & microbiology Materials Science & Nanotechnology Medicine & Pharmacology Public Health Veterinary Other

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Food Preference of Semi-Provisioned Macaques Based on Feeding Duration and Foraging Party Size ISLAMUL HADI; BAMBANG SURYOBROTO; DYAH PERWITASARI- FARAJALLAH
HAYATI Journal of Biosciences Vol. 14 No. 1 (2007): March 2007
Publisher : Bogor Agricultural University, Indonesia

The long-tailed macaques (Macaca fascicularis; also called crab-eating monkeys) have broad geographic distribution in continent and archipelago of Southeast Asia. They have wide ecological plasticity to adapt to various environments. Due to disturbance of habitat and intensive contact with human, long-tailed macaques change their feeding behavior. Here we present food preferences of long-tailed macaques that live in Cikakak Monkey Park in Central Java. By recording the number of individuals who fed on a food patch and the duration of eating the food, we found that proportion of their food from natural resources is greater than those from human sources. They shifted to omnivory feeding mode to adapt to the changing environment. At many times, this omnivorous feeding brought forth crop-raiding which were not in natural behavioral repertory. Conservation effort of long-tailed macaques, and primate in general, should consider the aspect of human-modulated behavior in feeding ecology if we wish to be successful. Key words: feeding ecology, long-tailed macaques, Cikakak monkey park, party size, feeding duration, omnivorous

Human Short Tandem Repeat (STR) Markers for Paternity Testing in Pig-Tailed Macaques DYAH PERWITASARI -FARAJALLAH
HAYATI Journal of Biosciences Vol. 14 No. 2 (2007): June 2007
Publisher : Bogor Agricultural University, Indonesia

This study investigated the use of human short tandem repeat (STR) or microsatellite loci markers for assessing paternity and genetic structure of pig-tailed macaques (Macaca nemestrina) breeding colony. Four human microsatellite primer pairs located at human map position D1S548, D3S1768, D5S820, and D2S1777, were amplified by polymerase chain reaction (PCR) for pig-tailed macaques. Four loci were found to be clearly and reliably amplified, and three loci exhibited high levels of genetic heterogeneity. These loci were sufficiently informative to differentiate discretely between related and unrelated pairs. Key words: human short tandem repeats (STRs), paternity testing, pig-tailed macaques, Macaca nemestrina

Identification of Diagnostic Mitochondrial DNA Single Nucleotide Polymorphisms Specific to Sumatran Orangutan (Pongo abelii) Populations Puji Rianti; Dyah Perwitasari-Farajallah; Dondin Sajuthi; Joko Pamungkas; Alexander Nater; Michael Krützen
HAYATI Journal of Biosciences Vol. 22 No. 4 (2015): October 2015
Publisher : Bogor Agricultural University, Indonesia

The hypervariable region I of mitochondrial DNA has frequently been used to distinguish among populations, in particular in species with strong female philopatry. In such cases, populations are expected to diverge rapidly for hypervariable region I markers because of the smaller effective population size and thus increased genetic drift. This rapid divergence leads to the accumulation of mutations exclusively found in one population, which may serve as diagnostic single nucleotide polymorphisms (SNPs). To date, diagnostic SNPs distinctive to Sumatran orangutan populations have not yet been described. However, given the continuously declining numbers of Sumatran orangutans, this information can be vital for effective conservation measures, especially regarding reintroductions of orangutans in rehabilitation centers. Phylogenetic analyses of 54 samples of Sumatran orangutans from nine sampling sites with good provenance, we found five major clades and a total of 20 haplotypes. We propose a total of 52 diagnostic SNPs that are specific to Sumatran orangutan populations. Data can be used to develop restriction fragment length polymorphism assays to carry out genetic assignments using basic laboratory equipment to assign Sumatran orangutan to their population of origin.

Habitat Use of Migratory Shorebirds on the Coastline of Deli Serdang Regency, North Sumatra Province Chairunas Adha Putra; Dyah Perwitasari-Farajallah; Yeni Aryati Mulyani
HAYATI Journal of Biosciences Vol. 24 No. 1 (2017): January 2017
Publisher : Bogor Agricultural University, Indonesia

Mangrove forests an intertidal mudflat in the eastern coastal region of Deli Serdang are important habitats for migratory shorebirds. Land-use change and forest conversion threaten this important stopover point for migrating species. The lack of data and information of shorebirds habitats in this area limits conservation efforts and further threatens the survival of these species. The objective of this study is to investigate trends in habitat use by migratory shorebirds. Field work was conducted during migration season starting from October 2014 until April 2015. The presence of migratory shorebirds was assessed using binoculars and a monocular. Scan sampling was used to describe habitat use by shorebirds. The difference in behaviour among habitat was analyzed using analysis of variance. There were 30 species of shorebirds distributed across seven different habitat types in our study area. The most widely used habitat by shorebirds was mudflats, followed by marshes and plantations. This study revealed that mudflat habitat has high potential in supporting the existence of migratory shorebirds in this area.

Identification of Follower Status Based on Male Proximity Score in Crested Macaque Andre Pasetha; Lisa Michelle Danish; Dyah Perwitasari-Farajallah; Muhammad Agil; Antje Engelhardt
HAYATI Journal of Biosciences Vol. 27 No. 3 (2020): July 2020
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.27.3.241

Crested macaque live in multimale-multifemale social groups where temporary association (consortship) typically occurs. Current theory and these limited qualitative observations suggest the hypothesis that behavior functions as a means for males to gain access to fertile females. The aim of this study was to investigate follower status based on quantitative method. Males were classified as either “consort males,” “followers,” and “non-followers” based on proximity maintanance every 15 minute uses scan sampling. Tactics used by followers were classified into 1) individual challenge, 2) coalitionary challenge, 3) abandoned takeover, and 4) opportunistic takeover. The proportion of successful takeovers by followers was calculated by dividing the number of takeovers by followers by the total number of observed takeovers. The proportion of followers is higher than average on D-5 and earlier, D-4, and D-3. Only two of the four consort takeover tactics were used by followers. For abandoned which made up 40% and for individual tactic was made up to 11.5% of consort takeovers tactic used. This study contribute to our understanding of alternative mating strategy in primate and provide the first quantitative data demonstrating that following is an alternative mating strategy in crested macaque (Macaca nigra).

Waterbird Foraging Habitat Selection in Balikpapan Bay: Water Depth and Patch Area as Important Factors Alexander Kurniawan Sariyanto Putera; Dyah Perwitasari-Farajallah; Yeni Aryati Mulyani; Stanislav Lhota; Riki Herliansyah; Sodikin Sodikin
HAYATI Journal of Biosciences Vol. 28 No. 4 (2021): October 2021
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.28.4.312-324

Balikpapan Bay is one of the wetlands providing potential foraging habitat for waterbirds in Indonesia. Potential habitat loss due to oil industry expansion, recent waterbird occurrence, and co-occurrence of two closely related species with similar foraging characteristics led to habitat selection. Habitat selection could be affected by food as an intrinsic factor and extrinsic factor, for example, accessibility to the physical and biological components of the habitat. This study aimed to measure the foraging habitat selection, identify significant habitat quality parameters for the habitat selection and predict the foraging habitat selection model. We used one-zero sampling for collecting foraging habitat selection data, corer sampling for prey data, and collecting the abiotic environment, and Generalized Linear Modelling (GLM) to build the model. We identified four species as the migrant Little Egret (Egretta garzetta), Great Egret (Ardea alba), Purple Heron (Ardea purpurea), and Lesser Adjutant (Leptoptilos javanicus). All species, except Purple Heron, selected foraging habitats. A simple mathematic model of foraging habitat selection was significantly affected by two factors: water depth and patch area. A large patch area may provide primary prey abundance for waterbirds, while a low water depth level may give easy access to the prey.

Population Estimate of Long-Tailed Macaques (Macaca fascicularis) on Tinjil Island Dyah Perwitasari-Farajallah; Entang Iskandar; Hana Intishar Sawitri; Tommy Langgeng Abimanyu; Vallen Sakti Maulana; Annisa Devi Rachmawati; Indra Purnama; Huda S. Darusman
HAYATI Journal of Biosciences Vol. 30 No. 2 (2023): March 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.2.193-197

Tinjil Island was established as a Natural Habitat Breeding Facility for long-tailed macaques (Macaca fascicularis) in 1997. Between February 1998 and January 2007, 603 (61 males and 542 females) simian retrovirus (SRV) free long-tailed macaques were introduced to the island on the south coast of West Java and function as a primate resource and conservation program. To date, 3256 progenies have been harvested and used as the animal model. Therefore, it is necessary to survey the current population of the long-tailed macaques to evaluate whether the population is still under the island’s carrying capacity. This research aims to identify the population estimate of long-tailed macaques currently occupying the island. The observation was conducted in July 2021 using line transect sampling starting from 07.00 AM and 01.00 PM. Twelve observations were conducted during the study using CD and ES transects. CD (Chuck Darsono) and ES (Emil Salim) are the two longest trails on the island and represent the names of the people who initiated the captive breeding of Tinjil Island. The estimated group density of the long-tailed macaques on Tinjil Island is 13.46 groups/km2, while the estimated population density is 111.04 individuals/km2. The population estimated on the island is 627.38±23.53 individuals. The number indicates that the population is still under carrying capacity.

Genetic Variability of the Long-Tailed Macaque (Macaca fascicularis) Populations in Urban Habitat in Padang City, West Sumatra, Indonesia Sari, Ruhama Maya; Saepuloh, Uus; Rizaldi; Perwitasari-Farajallah, Dyah
HAYATI Journal of Biosciences Vol. 31 No. 2 (2024): March 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.2.392-403

The long-tailed macaque (Macaca fascicularis) is a primate species recognized for its exceptional ability to adapt to urban habitat. However, urban anthropogenic activities contribute to the fragmentation of macaque natural habitat, affecting genetic variation among distinct populations. Therefore, this study aimed to assess the genetic variability of M. fascicularis populations in Padang City, West Sumatra, Indonesia. A total of 70 fecal samples from the wild long-tailed macaques in Gunung Padang (GPD), Gunung Meru (GMR), and Gunung Pangilun (GPG) were collected using a non-invasive method. Conventional PCR amplification and Sanger sequencing were conducted to examine a 1,200-bp mitochondrial DNA (mtDNA) fragment in the D-loop region. The analysis of genetic variation showed that only two haplotypes were present in the three populations. Both GPD and GMR shared the same haplotype (H1), while the GPG population had a distinct haplotype (H2). No intrapopulation variation was observed, and haplotype differences were found in ten nucleotide sites with transition substitution mutations. These results showed limited genetic variation among populations of the long-tailed macaque in Padang, thereby providing valuable insights for stakeholders when formulating genetic conservation policies.

Genetic Structure of Gallus varius Based on Middle-Lower Section of Control Region mtDNA Achmad, Alfiyan; Farajallah, Achmad; Ulfah, Maria; Perwitasari-Farajallah, Dyah; Muladno, Muladno
HAYATI Journal of Biosciences Vol. 31 No. 3 (2024): May 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.3.548-558

Gallus varius, an indigenous bird species of Indonesia, demonstrates significant genetic diversity. The genetic diversity assessment in G. varius encompassed both mitochondrial DNA (mtDNA) and nuclear DNA, with the mtDNA analysis primarily centered on domain I of the control region. This study aimed to describe the genetic diversity and structure of G. varius inhabiting Java, Madura, Lombok and Sumbawa based on the middle-lower part of control region mtDNA. Genomic DNA was extracted from the calamus tip of feather, then the middle-lower part of control region was amplified and sequenced using two pairs of primers. In the examined control region, spanning from 944 to 1,008 bp, 13 bp of nucleotide variation was observed, with nucleotide diversity at 0.0021. Between G. varius samples and the reference (NC_007238.1), a total of 7 haplotypes were identified, 5 unique and 2 shared haplotypes, with haplotype diversity at 0.7692. The substantial diversity of haplotypes in this study and two previous study suggests that the genetic diversity of G. varius has remained stable over the past two decades. Additionally, genetic distance data indicate there is multiple G. varius subspecies, and the haplotype network accentuates signs of population differentiation.

Characterization of CDS Region of Exons 1 and 2 of SOX9 Gene as Potential Gene in Construction of Syrinx Structure in Junglefowl (Gallus sp.) Alfiyan, Achmad; Farajallah, Achmad; Maria, Ulfah; Perwitasari-Farajallah, Dyah; Muladno, Muladno
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1130-1143

The crowing of male Gallus exhibits diverse sound patterns. This is believed to be related to the phenotypic diversity of vocal organs, one of which is influenced by the nucleotide diversity of the associated genes. The SOX9 gene, involved in cartilaginous tissue growth and development, is reported to contribute e in the development of larynx and syrinx. This study aimed to characterize the CDS regions of exons 1 and 2 of the SOX9 gene in junglefowl to assess its diversity. Genomic DNA was extracted from ten individuals of G. varius from Lombok and Sumbawa. The CDS regions of SOX9 gene exons 1 and 2 were amplified using two primer pairs. Additionally, the CDS regions of SOX9 gene exons 1 and 2 from 54 junglefowl SRA data in an online repository were mapped and analyzed. The study identified all nucleotide sequences as CDS regions of SOX9 gene exons 1 and 2. Six shared, and 24 unique haplotypes were constructed. A putative amino acid sequence common to all Gallus species was also identified. The diversity observed in the CDS regions of SOX9 gene exons 1 and 2 nucleotide sequence showed a diﬀerent level with the diversity observed in its amino acid sequence.

Co-Authors ACHMAD FARAJALLAH Achmad, Alfiyan Alexander Kurniawan Sariyanto Putera Alexander Nater ALFIYAN, ACHMAD Andi Hiroyuki Andre Pasetha Annawaty Annawaty, Annawaty Annisa Devi Rachmawati Antje Engelhardt Arismayanti Eka Aron Batubara Asri Febriana Auliaputri, Tazkiah Azhari Purbatrapsila Baiq Farhatul Wahidah Bambang Suryobroto Behling, Hermann Chairunas Adha Putra Daisy Wowor, Daisy Dela Putri Amalia DEWI APRI ASTUTI Dondin Sajuthi Ellis Dwi Ayuningsih Entang Iskandar Entang Iskandar Entang Iskandar Entang Iskandar Entang Iskandar Entang Iskandar Entang Iskandar Erni Sulistiawati Fadla, Ilma Nadya Farida, Hilda Fery Dwi Riptianingsih Gholib Hana Intishar Sawitri Hana Intishar Sawitri Hélène Birot Helmi Romdhoni Hilda Farida Huda S. Darusman Huda Shalahudin Darusman Husni Mubarok I Gusti Agung Arta Putra Ibnu Maryanto Iffi Rizkiya Indra Purnama Irmanida Batubara Iskandar , Entang ISLAMUL HADI Jahnk, Svea Lina K.A.I Nekaris Kania Dewi Rafa Katherine Hedger Lhota, Stanislav LILIK BUDIPRASETYO Lisa Michelle Danish Lora purnamasari, Lora Marco Campera Maria Ulfah Mawardha, Fahrun Sahara Michael Krützen Muhamad Ilham MUHAMMAD AGIL Nabila Dhiya Ulhaq Nina Ratna Djuita Nirmala Fitria Firdhausi Novi Mayasari Novita Amalia Novita Anggraeni Nur Rachman Pamungkas, Ilham Hanaan Taqiuddin Pamungkas, Joko PASETHA, ANDRE Pradekso, Nur Aisyah Pratiwi, Intan Ratu Puji Rianti Qomariah, Indira Nurul Ramadhanti, Hanny Ribut, Amat Ridhatul Zuhra RIKA RAFFIUDIN Riki Herliansyah Rini Widayanti Riptianingsih, Fery Dwi Rissa Herawati Ginting Rizaldi Sari, Ruhama Maya Sayusti, Tiara Sese, Moh. Reza Silvy Thiyana Siti Lutvaniyah Sitompul, Rahmadi Sitti Aisyah May Wulandari Sodikin Sodikin Sri Suci Utami Atmoko Sri Sudarmiyati Tjitrosoedirdjo Stanislav Lhota TARUNI SRI PRAWAST MIEN KAOMINI ANY ARYANI DEDY DURYADI SOLIHIN Tommy Langgeng Abimanyu Tommy Langgeng Abimanyu Toulec, Tadeas UUS SAEPULOH Vallen Sakti Maulana Waterman, James O. WIDYASTUTI, SALMAH Winarti, Indah WINDRA PRIAWANDIPUTRA, WINDRA Wira, Dwi Wahyuda Yeni Aryati Mulyani Yuniarti Dwi Astuti

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