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ANALISIS PRIMER UNTUK AMPLIFIKASI PROMOTER inhA MULTIDRUG RESISTANCE TUBERCULOSIS (MDR-TB) DENGAN METODE POLYMERASE CHAIN REACTION (PCR) I Gusti Ayu Agung Septiari; Putu Sanna Yustiantara; Sagung Chandra Yowani
Jurnal Kimia (Journal of Chemistry) Vol. 9, no. 1 Januari 2015
Publisher : Program Studi Kimia, FMIPA, Universitas Udayana (Program of Study in Chemistry, Faculty of Mathematics and Natural Sciences, Udayana University), Bali, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (202.804 KB) | DOI: 10.24843/JCHEM.2015.v09.i01.p19

Abstract

The aim of this study was to analyze several primary combinations for amplifying inhA promoter region by in silico and in vitro ways. Primary in silico’s analysis was done by Clone Manager Suite 6 program. fabG gene sequence of M. tuberculosis was downloaded from www.ncbi.nlm.nih.gov (genbank: U66801.1) and used as DNA template. In vitro detection was done by PCR technique using P16 and 86 M. tuberculosis MDR isolates as DNA template. Amplification was done in described conditions: predenaturation at 95°C for 15 minutes, 45 cycle of amplication (denaturation on 94°C for 1 minute, annealing on 54°C for 1 minute 20 seconds dan extension on 72°C for 1 minute 10 seconds) and also post extension on 72°C for 10 minutes. PCR product was detected by agarose gel elektroforesis (1,5%). In conclusion, combination of primary forward (mabA-inhA-promoter-FS) 5’-ACATACCTGCTGCGCAAT-3’ (18 nucleotide) and primary reverse (mabA-inhA-promoter-R) 5’-CTCCGGTAACCAGGACTGAA-3’ (20 nucleotide) (Chen et al., 2011) have met the good criteria of primary combination which was seen from several aspects such as: primary length, Tm value, %GC, stability, number of hairpins, dimers and runs. In vitro detection showed that the primary combination also amplified inhA promoter region with the length of 284 pb
AMPLIFIKASI FRAGMEN 0,4 KB DAERAH D-LOOP DNA MITOKONDRIA LIMA INDIVIDU SUKU BALI TANPA HUBUNGAN KEKERABATAN DENGAN METODE POLYMERASE CHAIN REACTION (PCR) K. Ratnayani; Sagun Chandra Yowani; Liangky Syane S
Jurnal Kimia (Journal of Chemistry) Vol. 3, No. 1 Januari 2009
Publisher : Program Studi Kimia, FMIPA, Universitas Udayana (Program of Study in Chemistry, Faculty of Mathematics and Natural Sciences, Udayana University), Bali, Indonesia

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Abstract

The human mitochondrial DNA (mtDNA) has higher polimorfism level than nucleous genom, and it ismaternally transmitted. D-Loop is a non-sense region in human mtDNA that has the highest polimorfism. Generally,the aim of this research is to find out the variation in D-Loop region of mtDNA in some Balinese without familycorrelation. For that reason, this research was brought out to determine the sequences of nucleotide of D-Loop regionin five normal Balinese from different families without correlation. The specific aim of this research is to amplify the0,4 kb fragment of mtDNA D-Loop region in five Balinese above, using the PCR methode. In conducting the PCR,the temperature of annealing of primer and the weight of template of mtDNA were optimized. Several phases thathave been conducted : 1). Lisis of the cavum oris epithelium; 2). Quantation of DNA; 3). Reaction PCR; 4). Result ofPCR detection with agarosa gel electroforesisThe result of this research is the amplification of 0,4 kb fragment of D-Loop region in mtDNA by PCR.This research also found the optimum temperature annealing, which was 55 0C, and the optimum weight of templateof DNA which was ± 0,688 ?g.
DESAIN PRIMER UNTUK AMPLIFIKASI GEN katG MULTIDRUG RESISTANCE TUBERCULOSIS (MDR-TB) DENGAN METODE POLYMERASE CHAIN REACTION (PCR) Putu Tedi Suryadi; Ketut Ratnayani; Sagung Chandra Yowani
Jurnal Kimia (Journal of Chemistry) Vol. 8, No. 1 Januari 2014
Publisher : Program Studi Kimia, FMIPA, Universitas Udayana (Program of Study in Chemistry, Faculty of Mathematics and Natural Sciences, Udayana University), Bali, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (235.693 KB) | DOI: 10.24843/JCHEM.2014.v08.i01.p13

Abstract

Tuberculosis, the world’s major diseases, is one of the emerging infectious disease. The tuberculosis problem has become complicated and burdensome due to the emergence of drug resistant such as isoniazid (INH) resistant strains of Mycobacterium tuberculosis. Mutation in katG gene is the main mechanism of INH-resistance in most strains. Amplification of M. tuberculosis katG gene was performance by using PCR for detect the mutation. A pair of specific PCR primers (forward and reverse) was the most important factor to limit the target region of amplification. Primer designing is preceedly carried out for producing the specific primer desired. The aim of this study was to design the specific primers for a fragment of katG gene. In silico primer design was carried out by using Clone Manager Suite 6. DNA sequence template used in this primer design was downloaded from www.ncbi.nml.nih.gov. M. tuberculosis H37Rv katG gene with genbank code X68081.1 was choosen. This study was successfully designed the forward primer (5' GAAGTACGGCAAGAAGCTCTC 3') and reverse one (5' CGTGATCCGCTCATAGATCG 3') which was length of 21 and 20 nucleotide, respectively. These pair of primers were meet the requirement of a good primer include primer length, Tm value, percentage of GC content, no hairpins, limited dimers and runs. In conclusion, the result of this research showed that the primer designed were acceptable to amplify the fragment of 724 bp of katG gene in silico.
PERBANDINGAN KUALITAS DNA DENGAN MENGGUNAKAN METODE BOOM ORIGINAL DAN BOOM MODIFIKASI PADA ISOLAT Mycobacterium tuberculosis 151 Dewi Andayani Farmawati; I Nengah Wirajana; Sagung Chandra Yowani
Jurnal Kimia (Journal of Chemistry) Vol. 9, no. 1 Januari 2015
Publisher : Program Studi Kimia, FMIPA, Universitas Udayana (Program of Study in Chemistry, Faculty of Mathematics and Natural Sciences, Udayana University), Bali, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (66.834 KB) | DOI: 10.24843/JCHEM.2015.v09.i01.p07

Abstract

Tuberculosis (TB) is a disease caused by the Mycobacterium tuberculosis. Isolation  DNA is a necessary step to obtain the bacterial chromosomal DNA used in the Polymerase Chain Reaction (PCR). Boom isolation method is an isolation method commonly used in isolation DNA of M. tuberculosis. In Bali, the isolation DNA of M. tuberculosis conducted at the Laboratory of Biomolecular FK UNUD uses boom modification method. This research aims to compare the quality of DNA produced by the Boom methods and Boom modification methods. This research was started with the isolation process using Boom method and Boom modification  and subsequently amplified by PCR. Detection of PCR products was performed with electrophoresis method. DNA quality was determined by the thickness of bands DNA PCR product and purity analysis by spectrophotometry UV-Vis. The results obtained show that the quality of DNA Mycobacterium tuberculosis 151  isolate using Boom modification method (Laboratory of Biomolecular FK UNUD) is relatively better than Boom original methods (Boom et al, 1990).
KARAKTERISASI TOXOPLASMA GONDII ISOLAT INDONESIA Sagung Chandra Yowani; Endang Kumolosasi; Marlia Singgih Wibowo
Jurnal Kimia (Journal of Chemistry) Vol. 1, No. 1 Januari 2007
Publisher : Program Studi Kimia, FMIPA, Universitas Udayana (Program of Study in Chemistry, Faculty of Mathematics and Natural Sciences, Udayana University), Bali, Indonesia

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Abstract

Cathodic protection basically reduces the corrosion rate of a metallic structure by reducing its corrosionpotential, Toxoplasma gondii isolated from diaphragm of sheep at an abbatoir in Sukabumi, West Java had beencharacterized by Centre Research Institute for Animal Sciences. The characterization included study of morphologyby optical microscope, study of ultrastructure by transmission electron microscope, the study of the parasite growthin mice Mus musculus, and study of proteins of the parasite. The growth of parasite in mice had been studied usingtwo groups of mice i.e., normal group and immunosuppressed group. The number of parasites was comparedstatistically using student’ t-pair test. Results showed that dexamethasone at a dose of 5.2 mg/20 g body weight intraperitoneally to the immunosuppresed mice did not increase the number of extracelluler parasites in the peritonealfluid. The best parasite harvest time was on the 4th day after inoculation. Determination of parasite protein obtainedat 4 days after inoculation using sodium dodecyl sulphate polyacrylamide gel electrophoresis showed a dominantsurface protein of 42 kDa.
PROFIL TERAPI OBAT PADA PASIEN RAWAT INAP DENGAN DIARE AKUT PADA ANAK DI RUMAH SAKIT UMUM NEGARA Arifani Siswidiasari; Ketut Widyani Astuti; Sagung Chandra Yowani
Jurnal Kimia (Journal of Chemistry) Vol. 8, No. 2 Juli 2014
Publisher : Program Studi Kimia, FMIPA, Universitas Udayana (Program of Study in Chemistry, Faculty of Mathematics and Natural Sciences, Udayana University), Bali, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (86.374 KB) | DOI: 10.24843/JCHEM.2014.v08.i02.p07

Abstract

The Diarrhea in children is the highest cause of morbidity and mortality in the world, especially in the developing countries. The purposes of this research are to describe about patient profile, the use of medicines profile and the treatment period in the RSU Negara. The research method used was a descriptive retrospective by taking medical records of childhood diarrhea patients in The Public Hospital RSU Negara  from July to December 2012. The diarrhea type studied was acute diarrhea in children  in age range of 0-14 years. The results showed that the drugs which were used for the acute diarrhea treatment in the Public Hospital of RSU Negara were: male (69.57%), female (30.43%), with age range: 0 - <1 year old (60.87%), 1 - <5 years old (34.78%), and 5 - <14 years old (4.35%). The highest classification of acute diarrhea were acute diarrhea with mild dehydration (63.04%) and without dehydration (36.96%). The use of antibiotics (89.13%), without antibiotics (10.87%), the use of ringer's lactate (93.48%), dextrose (13.04%), zinc (65.22%), antiemetic (58.69%), antipyretic (54.35 %), antacids (2.17%), H2 blocker (23.91%), probiotics (21.74%), synbiotics (34.78%), ORS (10.87%), dexamethasone (4.35%), dygestive enzymes (2.17%), nystatin (2.17%). The condition of diarrhea patient when they were released from the hospital were cured (67.39%), begins to be cured (32.61%), with various of  treatment duration from  3 days (69.57%) , 4 days (23.91%), and 5 days (6.52%).
PEMBERDAYAAN IBU-IBU, BIDAN DAN KADER POSYANDU MELALUI PENYULUHAN TENTANG PEMBERIAN MAKANAN SEHAT UNTUK MENINGKATKAN GIZI DAN DAYA TAHAN TUBUH BAYI DAN ANAK DI DESA PENGOTAN KABUPATEN BANGLI Rini Noviyani; N. P. Ariantari; Rasmaya Niruri; K. Widyani Astuti; S. Chandra Yowani
Buletin Udayana Mengabdi Vol 13 No 2 (2014): Vol 13, No. 2 (2014)
Publisher : Lembaga Penelitian dan Pengabdian kepada Masyarakat

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Abstract

The Community Services was held in Bangli Utara Public Health Facility, Pengotan district, Bangli. The purpose of this activity is to give information about balanced nutition and massage for babies to participants which are housewives, midwifery and posyandu staff in Bangli Utara Public Health Facility, Pengotan. They were expected to have better understanding about balanced nutrition compared to imbalanced nutrition and how to massage their babies. The methods used in this activity were deliver information about balanced nutrition and invited discussion also the baby massage practice trained to them. The result showed that participants were very interested in our program. It could be proved by their activity in discussion.Keywords: information, balanced nutrition, baby massage practice
WHO ICD-10 BASED ONLINE DISEASE DIAGNOSIS FOR GENERATING DIGITAL MEDICAL RECORD APPLICATION DEVELOPMENT I Gusti Ngurah Lanang Wijayakusuma; Sagung Chandra Yowani
SINTECH (Science and Information Technology) Journal Vol. 5 No. 1 (2022): SINTECH Journal Edition April 2022
Publisher : Prahasta Publisher

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.31598/sintechjournal.v5i1.1040

Abstract

Medical Record is a medical document that contain history of patient’s disease also information about given treatments and medicines. Diagnosis of patient’s disease is one of content in Medical Record. Public health office recommends medical facility to write diagnosis into ICD-10 WHO standard. However, there are many of medical facility translate diagnosis into ICD-10 WHO standard manually. This manual way will make a lot of mistake or wrong translate result. This research will develop an online application to help the doctor to write patient’s disease diagnosis into ICD-10 WHO automatically. Doctors need to type the keyword of diagnosis name then selected diagnosis will automatically write into ICD-10 WHO standard. This application also can generate Digital Medical Record that can help medical facility to reopen or save Medical Record Data in a long time.
Writing Guidance and Cover Belakang Sagung Chandra Yowani
Journal of Health Sciences and Medicine Vol 1 No 2 (2017): JHSM (September 2017)
Publisher : Institute for Research and Community Services Udayana University

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Abstract

DNA Probe Design for Detection Mutation at Codon 315 In katG Gene of Mycobacterium Tuberculosis to Real-Time Polymerase Chain Reaction I Gusti A. A. Santhi Rahmaryani; Ni Kadek Ariani; Dyah Subadrika Warma Dewi; Ni Komang Sasi Ani; Ade Ari Sundari; Kadek Widya Yuli Hartati; Sagung Chandra Yowani
Journal of Health Sciences and Medicine Vol 1 No 2 (2017): JHSM (September 2017)
Publisher : Institute for Research and Community Services Udayana University

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (773.559 KB) | DOI: 10.24843/JHSM.2017.v01.i02.p08

Abstract

High-level resistance to isoniazid as a first-line tuberculosis drugs can be caused by mutations in codon 315 katG Mycobacterium tuberculosis . Mutation at codon 315 is the most frequent mutation with the highest amino acid variation, compared to other codons in the Mycobacterium tuberculosis katG gene. Therefore, a specific probe is required for rapid and proper detection of mutations at codon 315. In this study, the design of a nucleotide sequence probe with TaqMan labeling was performed using Clone Manager Suite 6 software . The mutant probe obtained was analysed in two stages. The initial analysis is based on the length of the probe (22-30 bases), Tm (70ºC), %GC (35-65%), not in hairpin form, dimer (< 5 bases), runs and repeat (? 4 for base A, T, C, and < 3 for base G). Furthermore the final analysis was carried out with no G base in 2 bases at the end of the 5’ probe and the amount of base C ? G. The study resulted in 260 probe mutants. After the initial analysis, 11 mutant probes were obtained to recognize mutations in the codon of 315 katG Mycobacterioum tuberculosis genes. The probe consists of 2 probes for the S315T mutation, 6 probes for S315N mutation, and 3 probes for S315V mutation. The criteria of the 11 mutant probes are 22-23 bases long, Tm 70ºC, % GC 56-63%, 4 dimer , 2 runs , and does not have repeats and does not form hairpin at a temperature of 56ºC. Based on the final analysis, 3 mutant probes were obtained fulfilling the TaqMan probe labeling criteria, namely K315MT1 for specific detection of mutation S?T and K315MN5, then K315MN23 for specific detection of mutation S?N. The conclusion of this study shows that the best mutant nucleotide sequence probes for the detection of mutations at codon of 315 KatG Mycobacterium tuberculosis genes are 5’-FAM-CC ACC GGC ATC GAG GTC GTA TG-TAMRA-3’; 5’FAM-ATC ACC AAC GGC ATC GAG GTC G-TAMRA-3’; dan 5’FAM-C ACC AAC GGC ATC GAG GTC GTA T-TAMRA-3’. The design of the mutant probe according to the TaqMan probe criterion for real-time PCR was obtained by 3 probes from the 11 selected mutant probes in the initial analysis.
Co-Authors A. W. Dwiputri Ade Ari Sundari Ade Ari Sundari Amelia Putri, Ni Luh Dian Saptari Arifani Siswidiasari Asmara A. A. R. Astuti, M.A.P. Ayu Nyoman Chandra Yustiana Ayu Putu Chika Iswari Anjani, Sang Cista Dewi, Ni Putu Fiona Dek Pueteri Dewi Suryani Deniariasih, N.W. Devi, Ni Wayan Antika Sri Devita Kusdianingrum Dewa Ayu Swastini Dewi Andayani Farmawati Dwicandra, N.M.O. Dyah Subadrika Warma Dewi Endang Kumolosasi Gede Bayu Surya Ekayana, I Heni Pujiastuti I Gede Ketut Sajinadiyasa I Gusti A. A. Santhi Rahmaryani I Gusti Ayu Agung Septiari I Ketut Juniarta I Ketut Tunas I Made Dira Swantara I Nengah Wirajana I Nyoman Gede Budiana I Wayan Kasa Ida Ayu Gendari Ida Ayu Ratih Dwi Nugraha Putri Ida Bagus Nyoman Putra Dwija Indra Juana Adikara Jennifer Tamara Jennifer Tamara Kadek Ratna Sari Dewi Kadek Widya Yuli Hartati Ketut Ratnayani Ketut Widyani Astuti Liangky Syane S Luh Vida Sasmitha Luk Ketut Budi Maitriani M. A. Pratiwi Made Dharmesti Wijaya Made Rai Dwitya Wiradiputra Marfu'ah, Nurul Marlia Singgih Wibowo Mirawati N.K.W. Ni Kadek Ari Cipta Pratiwi Ni Kadek Ariani Ni Ketut Sri Anggreni Ni Komang Sasi Ani Ni Made Febrianti Ni Made Yustikarini Ni Nyoman Pradnya Utari Ni Putu Ariantari Ni Putu Intan Satya Dewi Ni Putu Monica Rosdiana Dewi Paramitha Ni Wayan Sukma Pramitha Sari1 Osamu Iitsuka Pradnyaniti, D.G Putri, Ni Kadek Sri Adnyani Alit Putu Ayu Indrayathi Putu Lita Astriani Rasmaya Niruri Rasmaya Niruri Ratna Sari Dewi, Kadek Rini Noviyani Sang Ayu Putu Chika Iswari Anjani Saputra, Gusti Nyoman Oka Sari Dewi, Kadek Ratna Sudarma, I Wayan Ari Syamsul Arifin Tasya Pramiswari Tirtawati, Ni Putu Ayu Wijayakusuma, I Gusti Ngurah Lanang Yayanasri Yayanasri, Yayanasri Yustiantara, Putu Sanna