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Journal : JOIV : International Journal on Informatics Visualization

Convolutional Neural Network featuring VGG-16 Model for Glioma Classification Agus Eko Minarno; Sasongko Yoni Bagas; Munarko Yuda; Nugroho Adi Hanung; Zaidah Ibrahim
JOIV : International Journal on Informatics Visualization Vol 6, No 3 (2022)
Publisher : Politeknik Negeri Padang

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.30630/joiv.6.3.1230

Abstract

Magnetic Resonance Imaging (MRI) is a body sensing technique that can produce detailed images of the condition of organs and tissues. Specifically related to brain tumors, the resulting images can be analyzed using image detection techniques so that tumor stages can be classified automatically. Detection of brain tumors requires a high level of accuracy because it is related to the effectiveness of medical actions and patient safety. So far, the Convolutional Neural Network (CNN) or its combination with GA has given good results. For this reason, in this study, we used a similar method but with a variant of the VGG-16 architecture. VGG-16 variant adds 16 layers by modifying the dropout layer (using softmax activation) to reduce overfitting and avoid using a lot of hyper-parameters. We also experimented with using augmentation techniques to anticipate data limitations. Experiment using data The Cancer Imaging Archive (TCIA) - The Repository of Molecular Brain Neoplasia Data (REMBRANDT) contains MRI images of 130 patients with different ailments, grades, races, and ages with 520 images. The tumor type was Glioma, and the images were divided into grades II, III, and IV, with the composition of 226, 101, and 193 images, respectively. The data is divided by 68% and 32% for training and testing purposes. We found that VGG-16 was more effective for brain tumor image classification, with an accuracy of up to 100%. 
Optimization of General Threshold Value for Preprocessing in Plasmodium Parasites Detection Nugroho, Hanung Adi; Nurfauzi, Rizki
JOIV : International Journal on Informatics Visualization Vol 7, No 4 (2023)
Publisher : Society of Visual Informatics

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.62527/joiv.7.4.1285

Abstract

The high mortality rate of malaria makes it a severe disease that spreads throughout all-region by infected female Anopheles mosquitoes, especially in tropical countries. Accurate early malaria detection is one of the ways to reduce the mortality rate. Microscopy-based malaria examinations are still considered the gold standard. Due to numerous large malaria patients with limited parasitologists, an automated detection system is needed as a second opinion to assist parasitologists. This study proposed an optimization method for finding an optimal global threshold value for pre-processing parasite detection. There were three stages of the proposed method. The first is to pre-process digital microscopic images using color channel selection, contrast stretching, and morphological operation. The second is to find the global threshold value using multiple modified Otsu’s. The third is to determine the optimum global threshold value. In the last stage, predicted threshold values are generated using a pattern recognition approach to determine the optimum global threshold value. The proposed method evaluated 468 microscopic images captured from hundreds of thin smear blood slides. The slides are provided by the Department of Parasitology-UGM and the Eijkman Institute for Molecular Biology. The set image contains 691 malaria parasites in all types and life stages of malaria parasites. The proposed method obtained a sensitivity of 99.6 % and the smallest FPs number compared to without the optimization.  It indicates that the proposed method has the potential to be implemented in the initial stages of the malaria detection system.
Batik Classification using Microstructure Co-occurrence Histogram Minarno, Agus Eko; Soesanti, Indah; Nugroho, Hanung Adi
JOIV : International Journal on Informatics Visualization Vol 8, No 1 (2024)
Publisher : Society of Visual Informatics

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.62527/joiv.8.1.2152

Abstract

Batik Nitik is a distinctive form of batik originating from the culturally rich region of Yogyakarta, Indonesia. What sets it apart from other batik styles is its remarkable motif similarity, a characteristic that often poses a considerable challenge when attempting to distinguish one design from another. To address this challenge, extensive research has been conducted with the primary objective of classifying Batik Nitik, and this research leverages an innovative approach combining the microstructure histogram and gray level co-occurrence matrix (GLCM) techniques, collectively referred to as the Microstructure Co-occurrence Histogram (MCH).The MCH method offers a multi-faceted approach to feature extraction, simultaneously capturing color, texture, and shape attributes, thereby generating a set of local features that faithfully represent the intricate details found in Batik Nitik imagery. In parallel, the GLCM method excels at extracting robust texture features by employing statistical measures to portray the subtle nuances within these batik patterns. Nevertheless, the mere fusion of microstructure and GLCM features doesn't inherently guarantee superior classification performance. This research paper has meticulously examined many feature fusion scenarios between microstructure and GLCM to pinpoint the optimal configuration that would yield the most accurate results. The dataset used consists of 960 Batik Nitik samples, comprising 60 categories. The classifiers employed in this study are K-Nearest Neighbor (KNN), Support Vector Machine (SVM), Decision Tree (DT), Naïve Bayes (NB), and Linear Discriminant Analysis (LDA). Based on the experimental results, the fusion of microstructure and GLCM features with the (LDA) classifier yields the best performance compared to other scenarios and classifiers.
Batik Image Representation using Multi Texton Co-occurrence Histogram Minarno, Agus Eko; Soesanti, Indah; Nugroho, Hanung Adi
JOIV : International Journal on Informatics Visualization Vol 8, No 3-2 (2024): IT for Global Goals: Building a Sustainable Tomorrow
Publisher : Society of Visual Informatics

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.62527/joiv.8.3-2.3095

Abstract

This paper introduces a novel approach to batik image representation using the texton-based and statistical Multi Texton Co-occurrence Histogram (MTCH). The MTCH framework is leveraged as a robust batik image descriptor, capable of encapsulating a comprehensive range of visual features, including the intricate interplay of color, texture, shape, and statistical attributes. The research extensively evaluates the effectiveness of MTCH through its application on two well-established public batik datasets, namely Batik 300 and Batik Nitik 960. These datasets serve as benchmarks for assessing the performance of MTCH in both classification and image retrieval tasks. In the classification domain, four distinct scenarios were explored, employing various classifiers: the K-Nearest Neighbors (K-NN), Support Vector Machine (SVM), Decision Tree (DT), and Naïve Bayes (NB). Each classifier was rigorously tested to determine its efficacy in correctly identifying batik patterns based on the MTCH descriptors. On the other hand, the image retrieval tasks were conducted using several distance metrics, including the Euclidean distance, City Block, Bray Curtis, and Canberra, to gauge the retrieval accuracy and the robustness of the MTCH framework in matching similar batik images. The empirical results derived from this study underscore the superior performance of the MTCH descriptor across all tested scenarios. The evaluation metrics, including accuracy, precision, and recall, indicate that MTCH not only achieves high classification performance but also excels in retrieving images with high similarity to the query. These findings suggest that MTCH is a highly effective tool for batik image analysis, offering significant potential for applications in cultural heritage preservation, textile pattern recognition, and automated batik classification systems.
Classification of Brain Tumors on MRI Images Using DenseNet and Support Vector Machine Eko Minarno, Agus; Setiyo Kantomo, Ilham; Setiawan Sumadi, Fauzi Dwi; Adi Nugroho, Hanung; Ibrahim, Zaidah
JOIV : International Journal on Informatics Visualization Vol 6, No 2 (2022)
Publisher : Society of Visual Informatics

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.30630/joiv.6.2.991

Abstract

The brain is a vital organ in the human body, performing various functions. The brain has always played a major role in the processing of sensory information, the production of muscular activity, and the performance of high-level cognitive functions. Among the most prevalent diseases of the brain is the development of aberrant tissue in brain cells, which results in the formation of brain tumors. According to data from the International Agency for Research on Cancer (IARC), more than 124,000 people worldwide were diagnosed with brain tumors in 2014, and more than 97,000 people died due to the condition. Current research indicates that magnetic resonance imaging (MRI) is the most effective means of detecting brain cancers. Because brain tumors are associated with significant mortality risk, a large number of brain tumor MRI imaging datasets were used in this research to detect brain cancers using deep learning techniques. To classify three forms of brain tumors, including glioma, meningioma, and pituitary, a deep learning model called DenseNet 201 paired with Support Vector Machines (SVM) was employed in this work included three types of brain tumors. Based on the results of the tests that were conducted, the best accuracy results obtained in this study were 99.65 percent, with a comparison ratio of 80 percent for training data and 20 percent for testing data, oversampled with the SMOTE method, with the best accuracy results obtained in this study being 99.65 percent.
Classification of Diabetic Retinopathy Disease Using Convolutional Neural Network Minarno, Agus Eko; Cokro Mandiri, Mochammad Hazmi; Azhar, Yufis; Bimantoro, Fitri; Nugroho, Hanung Adi; Ibrahim, Zaidah
JOIV : International Journal on Informatics Visualization Vol 6, No 1 (2022)
Publisher : Society of Visual Informatics

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.30630/joiv.6.1.857

Abstract

Diabetic Retinopathy (DR) is a disease that causes visual impairment and blindness in patients with it. Diabetic Retinopathy disease appears characterized by a condition of swelling and leakage in the blood vessels located at the back of the retina of the eye. Early detection through the retinal fundus image of the eye could take time and requires an experienced ophthalmologist. This study proposed a deep learning method, the Efficientnet-b7 model to identify diabetic retinopathy disease automatically. This study applies three preprocessing techniques that could be implemented in the dataset "APTOS 2019 Blindness Detection". In preprocessing technique trial scenarios, Usuyama preprocessing technique obtained the best results with accuracy of 89% of train data and 84% in test data compared to Harikrishnan preprocessing technique which has 82% accuracy in test data, and Ben Graham preprocessing has 81% accuracy in test data. In this study, Hyperparameter tuning was conducted to find the best parameters for use on the EfficientNet-B7 Model. In this study, we tested the Efficientnet-B7 model with an augmentation process that can reduce the occurrence of overfitting compared to models without augmentation. Preprocessing techniques and augmentation techniques can influence the proposed EfficientNet-B7 model in terms of performance results and reduce the overfitting of models.
Co-Authors - Nurfadilah, - A.A. Ketut Agung Cahyawan W Achmad Rizal Ade Sofa Adhistya Erna Permanasari Agus Eko Minarno Ahmad Nasikun Al-Fahsi, Resha Dwika Hefni Albert Ch. Soewongsono, Albert Ch. Alfarisi, Ikhsan Anondho Wijanarko Aqil Aqthobirrobbany Aqthobirrobbany, Aqil Aras, Rezty Amalia Arham, Aulia Arif Masthori Atmaja Perdana, Chandra Ramadhan Azof Ghazali Sujono Bhisma Murti Cahyani Windarto Chitra Octavina Cindy Claudia Febiola, Cindy Claudia Citra Prasetyawati Cokro Mandiri, Mochammad Hazmi Danny Kurnianto Dewanta, Wika Dewi Kartika Sari Dian Nova Kusuma Hardani Dianursanti Dimas, Dimas Dindin Hidayat Dwi Haryono E. Elsa Herdiana Murhandarwati Elisabeth Deta Lustiyati Erwin Setyo Nugroho Eva Yuliana Fitri Faisal Najamuddin Fathania Firwan Firdaus Faza Maula Azif Fitri Bimantoro Ganesha L Putra Guyub Nuryanto Handani, Deni Hasdani, Hasdani Hasnely, Hasnely Hastuti, Uki Retno Budi Heri Hermansyah Heru Supriyono Hesti Khuzaimah Nurul Yusufiyah Hotama, Christianus Frederick Hutami, Augustine Herini Tita I Md. Dendi Maysanjaya Ibnu Taufan, Ibnu Ibrahim, Zaidah Ichsan Setiawan Igi Ardiyanto Ignatia Dhian Estu Karisma Ratri Imelda Imelda Indah Soesanti Indriana Hidayah Ismail Setiawan Jafaruddin Jafaruddin, Jafaruddin Kartika Firdausy Kirana, Thea Koko Ondara Krisna Nuresa Qodri KZ Widhia Oktoeberza Lina Choridah Listyalina, Latifah M. Khairun Iffat Made Satria Wibawa Maemonah, Maemonah Mahdi Abdullah Syihab Marshell Tendean Momoji Kubo Muhammad Bayu Sasongko Muhammad Rausan Fikri Naomi Shibasaki-Kitakawa Nasikun, Ahmad Ndii, Meksianis Z Nenden Siti Aminah Noor Abdul Haris Noor Akhmad Setiawan Nora Anisa Br. Sinulingga Novianti Puspitasari Nugroho, Anan Nur Fadhilah Nurcahyani Wulandari Nurfauzi, Rizki Oktoeberza, Widhia KZ Oyas Wahyunggoro Perdana, Adli Waliul Persada, Anugerah Galang Pranowo, Vicko Prasojo, Sasmito Praswasti P. D.K Wulan Puspitasari, Novianti Putri Bungsu Rachman, Anung Ratna Lestari Budiani Buana Rima Fitria Adiati Rina Sri Widayati Riri Ferdiana Risanuri Hidayat Rita Arbianti Rizky Naufal Perdana Robert Silas Kabanga Rochim, Febry Putra Roekmijati W. Soemantojo Saftirta Gatra Dewantara Sandy Anwar Mursito Sarjana Sarjana Sasongko Yoni Bagas Septian Rico Hernawan Setiyo Kantomo, Ilham Sudaryanto . Sukiyo Sukiyo Sumadi, Fauzi Dwi Setiawan Sunu Wibirama Suzanna Ndraha Syahrul Purnawan Syahwami, Syahwami Tania Surya Utami TATI NURHAYATI Teguh Bharata Adji Toshiy Yonemoto Tri Lestari Ulung Jantama Widhia K.Z Oktoeberza Widhia K.Z Oktoeberza Widya Sari Wika Dewanta Willy Anugrah Cahyadi Windarta, Budi Woraratpanya, Kuntpong Yenny Rahmawati Yuda Munarko Yufis Azhar Yulaikha Istiqomah Yulyanti, Vesi Zaidah Ibrahim Zubri, Aldino