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Morpho-anatomical structure and DNA barcode of Sonchus arvensis L. Dwi Kusuma Wahyuni; SHILFIANA RAHAYU; PUTUT RAKHMAD PURNAMA; TRIONO BAGUS SAPUTRO; SUHARYANTO; NASTITI WIJAYANTI; HERY PURNOBASUKI
Biodiversitas Journal of Biological Diversity Vol. 20 No. 8 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200841

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Abstract. Wahyuni DK, Rahayu S, Purnama PR, Saputro TB, Suharyanto, Wijayanti N, Purnobasuki H. 2019. Morpho-anatomical structure and DNA barcode of Sonchus arvensis L. Biodiversitas 20: 2417-2426. Tempuyung or show thistle (Sonchus arvensis L.) belongs to the Asteraceae. Morpho-anatomy and DNA (Deoxyribonucleic Acid) barcoding of the plant correlates with species identification and metabolite synthesis. This research aims to look at morpho-anatomical structures and analyze the DNA barcode of Sonchus arvensis L (tempuyung). Three samples used for morpho-anatomical analysis are leaves, stems, roots, fruit, and seeds. Anatomical samples are made using the embedding method. DNA barcode uses multiple locus from plastid genome: rbcL and matK. Morpho-anatomical structure of tempuyung showed a similar structure of Sonchus genus. The stem presents in the intercellular space, whereas the roots and leaves present in the vascular tissue and the seeds. Fruits present in each part of the body. Tissues that formed root are epidermis, cortex, endoderm, and stele. Tissues that formed stem are epidermis, cortex, and stele. Tissues that formed leaf are epidermis, cortex, phloem, and xylem. Tissues that formed the fruit and seed are paranormal and sclerenchyma tissues. Sonchus arvensis sequence for rbcL has a similar 100% maximum identity to rbcL gene of S. arvensis, Sonchus asper, and Sonchus oleraceus, whereas Sonchus arvensis matK sequence has a similar 99.31% maximum identity to other S. arvensis matK sequences in BLAST system. These findings provide morpho-anatomical features and DNA barcoding for identification of S. arvensis. from others species in the same genus. Thus also can be considered as pharmaceutical standard.
Development and regeneration of somatic embryos from leaves-derived calli of Coffea liberica FITRIA ARDIYANI; Edy Setiti Wida Utami; HERY PURNOBASUKI; SENJA APRILIA PARAMITA
Biodiversitas Journal of Biological Diversity Vol. 21 No. 12 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211246

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Abstract. Ardiyani F, Utami ESW, Purnobasuki H, Paramita SA. 2020. Development and regeneration of somatic embryos from leaves-derived calli of Coffea liberica. Biodiversitas 21: 5829-5834. Coffea liberica is an important and potentially commercial plant with a high economic value from the Coffea genus. Therefore, the availability of planting material is needed to increase productivity and ensure the sustainability of its farming. Somatic embryogenesis is a powerful propagation method used to produce clonal plants from limited genetic material. In the present research, we have shown that C. liberica could be successfully regenerated in vitro via somatic embryogenesis from leaves derived embryogenic callus. These calli were cultured on Murashige Skoog (MS) medium added with 1 mgL-1 BAP or in combination with 2.4 D (0.5, 1.0, 1.5 and 2 mgL-1) for embryo development induction. Furthermore, the medium containing only BAP was best for embryo development induction after culturing for 12 weeks, with the highest number of cotyledonary stage embryos (17.8%) and producing a total of embryo (20.2). Following cotyledonary stage embryo were cultured on new MS medium containing 0.5 mgL-1 BAP, 0.5 mgL-1 IAA, 0.5 mgL-1 NAA only, and 0.5 mgL-1 BAP in combination with 0.5 mgL-1 IAA or 0.5 mgL-1 NAA. Interestingly, the results showed that cotyledonary stage embryos were converted into complete plants at all treatment, but the MS medium containing 0.5 mgL-1 BAP was found to be the most effective in promoting regeneration with 2.6 leaves per-plantlet and height of 5.2 mm. Based morphological analysis confirm that the development of somatic embryo from leaves-derived calli of Coffea liberica started with the formation of embryo globular, heart, torpedo, cotyledonary stages, and finally conversion of cotyledonary embryo into complete plant.
Morpho-anatomical characterization and DNA barcoding of Achillea millefolium L. MOCHAMMAD ILHAM; SITI RIZQIYATUL MUKARROMAH; GALUH AYU RAKASHIWI; DANI TRI INDRIATI; BRUNI FLARANDA YOKU; PUTUT RAKHMAD PURNAMA; JUNAIRIAH JUNAIRIAH; SEHANAT PRASONGSUK; HERY PURNOBASUKI; DWI KUSUMA WAHYUNI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230430

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Abstract. Ilham M,Mukarromah SR, Rakashiwi GA, Indriati DT, Yoku BF, Purnama PR, Junairiah, Prasongsuk S,Purnobasuki H, Wahyuni DK. 2022. Morpho-anatomical characterizationand DNA barcoding of Achillea millefolium L. Biodiversitas 23: 1958-1969. One of the important things to study the distribution of secondary metabolites in the plant body is to carry out the identification process. Morphological markers have several limitations to recognize plants, therefore supporting data is needed so that the information becomes more comprehensive. This study aims to identify Achillea millefolium L. based on morphological, anatomical, and DNA barcoding markers to obtain specific data and avoid confusion. Morphological studies were carried out descriptively using vegetative organs, while anatomical studies of rhizomes, stems, and leaves used the paraffin method. The DNA barcoding was performed by analyzinggenes from 3 different individuals. The research was carried out by amplifying and sequencing the partial gene in the ribulose-bisphosphate carboxylaselarge subunit (rbcL) regions and maturase-K (matK). The results showed that the plant had taproots, short stems due to root rosette and the leaves were double compound. The rhizome and stem tissues had almost the same structure, while the leaves had a tissue arrangement that was similar to other plants in general, except that the mesophyll tissue was undifferentiated. The results of DNA barcoding showed a percentage of identity above 98% for both the rbcLand matK genes.
Morpho-anatomical characterization and DNA barcoding analysis of Pluchea indica (L.) Less. DWI KUSUMA WAHYUNI; SITI RIZQIYATUL MUKARROMAH; PUTUT RAKHMAD; MOCHAMMAD ILHAM; GALUH AYU RAKASHIWI; DANI TRI INDRIATI; BRUNY FLARANDA YOKU; HERY PURNOBASUKI; JUNAIRIAH JUNAIRIAH; SEHANAT PRASONGSUK
Biodiversitas Journal of Biological Diversity Vol. 23 No. 8 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230851

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Abstract. Wahyuni DK, Mukarromah SR, Rakhmad P, Ilham M, Rakashiwi GA, Indriati DT, Yoku BF, Purnobasuki H, Junairiah, Prasongsuk S. 2022. Morpho-anatomical characterizationand DNA barcoding analysisof Pluchea indica (L.) Less.. Biodiversitas 23: 4272-4282. Pluchea indica (L.) Less. is a member of the Asteraceae family and is popular as a medicinal plant. It is very important to authenticate plants using various markers to confirm the labeling of plants and to reveal the bioactive compounds for pharmaceutical research. This study aims to characterize the morpho-anatomical and DNA barcoding aspects of P. indica. Three samples obtained from Taman Husada Graha Famili, Surabaya, Indonesia were used in this study. Morphological studies were carried out descriptively, while the paraffin method was used for anatomical observations. DNA barcoding analysis was performed by amplifying and aligning the rbcLand matKgenes. Morphologically, P. indicahas organs like Asteraceae plants in general, with specific characteristics in leaves and flowers. P. indica has an anatomical organ similar to that of Asteraceae plants globally, only that there are specific histological features on its leaves, including anomocytic stomata, glandular cells, and multicellular glandular trichomes. Alignment and reconstruction of the phylogenetic tree showed that the sample plants were closely related to P. indica in the GenBank database. Based on morpho-anatomical characters and DNA barcodes, the plant under study was confirmed as P. indica L. (Less).
Morpho-anatomical characterization and DNA barcode of Cosmos caudatus Kunth. HERY PURNOBASUKI; GALUH AYU RAKHASHIWI; JUNAIRIAH JUNAIRIAH; DWI KUSUMA WAHYUNI; RAMADHANI EKA PUTRA; RIKA RAFFIUDIN; RC HIDAYAT SOESSILOHADI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 8 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230830

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Abstract. Purnobasuki H, Rakhashiwi GA, Junairiah, Wahyuni DK, Putra RE, Raffiudin R, Soessilohadi RCH. 2022. Morpho-anatomical characterization and DNA barcode of Cosmos caudatus Kunth. Biodiversitas 23: 4097-4108. Secondary metabolites in plants have various benefits, therefore their distribution in plant body parts is important to study. The identification process of plants should be conducted using several characters, including morphological and molecular data. This study aimed to identify and confirm Cosmos caudatus Kunth using morpho-anatomy characters and DNA barcodes. The plants used were three samples taken from the Husada Graha Famili Park, Surabaya. The morpho-anatomical investigation was carried out descriptively, while the DNA barcoding study was processed by amplifying and sequencing the rbcL and matK genes. Morphological studies indicate that the roots and stems of C. caudatus are similar to the organs of dicots shrubs in general. The leaves have a pinnate type with two different colors on each side of the leaf. Compound flowers are cup-type with two types of flowers, namely disc flowers and ray flowers. Based on anatomical observation, all vegetative organs have the same tissue as dicotyledonous plants. The anatomical characteristic of C. caudatus lies in its trichomes due to its anthocyanin content and stomata which are anomocytic and anisocytic types. DNA barcoding results showed that the three sample plants had identical similarities with several Cosmos genera contained in the GenBank database with percentage identities values ??above 98%, query covers 96-100%, and e-values ??of 0.
Short Communication: The flowering process of Prunus cerasoides Buch.-Ham. Ex D.Don in Bali Botanic Garden GEBBY AGNESSYA ESA OKTAVIA; RAJIF IRYADI; TRI WARSENO; HERY PURNOBASUKI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 2 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240259

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Abstract. Oktavia GAE, Iryadi R, Warseno T, Purnobasuki H. 2023. Short Communication: The flowering process of Prunus cerasoides Buch.-Ham. Ex D.Don in Bali Botanic Garden. Biodiversitas 24: 1186-1191. Prunus cerasoides Buch.-Ham. Ex D.Don is a native plant of the Indian-Indochinese floristic zone and one of the Eka Karya Bali Botanical Gardens' collection plants (EKBBG). Weather factors have an impact on the length of blossoming. Moreover, the microclimate variations study is a fascinating subject. A plant's adaptation is influenced by changes in the environment regularly. This research goal was to figure out how P. cerasoides flowers in EKBBG and how that relates to environmental parameters. The flowering time of four P. cerasoides trees from the EKBBG collection was observed. The weather from satellite data of the EKBBG Registration Unit provided environmental data in the form of air temperature, humidity, air pressure, and rainfall. The IBM SPSS Statistics 23 software was used to analyze the data. The results revealed that P. cerasoides in EKBBG flower twice a year, with the development stage of flower buds, blooming, and then the fall phase of the floral ornaments. Due to the blossoms falling, the fruit did not mature. Moreover, the number of blooms that develop is unaffected by temperature or UV index.
Pollination biology of yellow passion fruit (Passiflora edulis forma flavicarpa) at typical Indonesian small-scale farming RAMADHANI EKA PUTRA; GUNAWAN WIBISANA; IDA KINASIH; RIKA RAFFIUDIN; RC HIDAYAT SOESILOHADI; HERY PURNOBASUKI
Biodiversitas Journal of Biological Diversity Vol. 24 No. 4 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240430

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Abstract. Putra RE, Wibisana G, Kinasih I, Raffiudin R, Soesilohadi RCH, Purnobasuki H. 2023. Pollination biology of yellow passion fruit (Passiflora edulis forma flavicarpa) at typical Indonesian small-scale farming. Biodiversitas 24: 2179-2188. Yellow passion fruit (Passiflora edulis forma flavicarpa) has been considered one of the potential local fruits targeted as the export commodity of Indonesia. However, this fruit production level is relatively unstable, which lowers their potency as cash crops and makes them secondary fruits for small-scale farmers. One of the possible factors related to this condition is pollination success. This research aimed to study the pollination biology of yellow passion fruit in terms of flower interaction with insects and the morphological aspect of flowers. The observation was conducted in four sites at Kampung Organik Beji, Wonogiri Regency, between January-February 2022. Pollinators' census was done by scan sampling while flower-visiting insect activities were monitored by focal sampling. This study found 26 species of flower-visiting insects which can be grouped into 5 Ordo and 12 Families with moderate diversity index (H’=2.15), evenly distributed (J’=0.66), and low domination (D=0.32). Among identified insects, carpenter bees (Xylocopa latipes), stingless bees (Tetragonula laeviceps), and Asiatic honey bees (Apis cerana) were considered as pollinators in which X. latipes (Vt=11.81±7.44 second, Fvr=2.41±1.55) visited flower (Vt) on shorter times, and more flower visitation rate (Fvr) than T. laeviceps (Vt=12.36±8.32 second, Fvr=1.10±0.30). Furthermore, this study found that the benefit of natural pollination was better than hand cross-pollination. However, the benefit was hampered by a lack of plant protection and soil fertility management. This study may be applied as baseline information to create pollinator protection zones in the area near the plantation zone to ensure the pollination services for crops.
Effect of Curvularia andropogonis infection on secretory tissues and phenylalanine ammonia lyase enzyme of Cymbopogon nardus ROFIATUN SOLEKHA; NI N. T. PUSPANINGRUM; AISYAH H. RAMADANI; FEBIANTI D. HAPSARI; DINI ERMAVITALINI; HERY PURNOBASUKI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 2 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250218

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Abstract. Solekha R, Puspaningrum NNT, Ramadani AH, Hapsari FD, Ermavitalini D, Purnobasuki H. 2024. Effect of Curvularia andropogonis infection on secretory tissues and phenylalanine ammonia lyase enzyme of Cymbopogon nardus. Biodiversitas 25: 598-604. Cymbopogon nardus L. oil production decreased due to red spot disease caused by Curvularia andropogonis fungal infection. The objective of this study was to investigate the infection effect of C. andropogonis on secretory tissue formation in citronella leaf epidermis and the enzymatic defense expression response in C. nardus. Anatomical responses were observed from leaf secretory structure slide while PAL reactions were measured from enzyme activity in leaf samples of three treatment groups with healthy, wounded, and infected conditions. The morphological results of infected leaves changed from green to brownish triggered by pathogenic infection conditions that activated the PAL enzyme pathway and phenylpropanoid production as a defense. The results showed that the density of cells storing secondary metabolites flavonoids, tannins, and saponins in infected leaves increased compared to wounded and healthy ones. Secondary metabolites flavonoids, tannins, and saponins in wounded leaves increased compared to healthy leaves. It was observed that enzymatic response escalated when infection occurred. PAL enzyme activity test of C. nardus leaves showed that infected leaves had the highest value (0.0051 U/mL), followed by wounded leaves (0.0033 U/mL) and healthy leaves (0.0027 U/mL). Likewise, the specific activity of PAL enzyme in infected leaves was highest (0.121 U/mg), followed by injured leaves (0.040 U/mg) and healthy leaves (0.022 U/mg). The overall results exhibited that C. andropogonis infection affects the quality of secretory tissue and increases PAL enzyme activity as a form of defense. By detecting secretory tissue and defense enzymes after infection, further research can be carried out regarding controlling Curvularia andropogonis infections by engineering enzymes and secondary metabolites.
Pathogenesis-related proteins response in citronella grass (Cymbopogon nardus) infected by Curvularia andropogonis ROFIATUN SOLEKHA; M. AINUL MAHBUBILLAH; M. BADRUT TAMAM; FADHILATUSTSANI SOFIALANA; ALIFIA HAYA AS-SYIFA; ACHMAD DJAZULI; HERY PURNOBASUKI
Biodiversitas Journal of Biological Diversity Vol. 26 No. 11 (2025)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d261110

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Abstract. Solekha R, Mahbubillah MA, Tamam MB, Sofialana F, As-Syifa AH, Djazuli A, Purnobasuki H. 2025. Pathogenesis-related proteins response in citronella grass (Cymbopogon nardus) infected by Curvularia andropogonis. Biodiversitas 26: 5485-5494. The development and growth of citronella grass (Cymbopogon nardus) are often hindered by Curvularia andropogonis fungal infection, which causes leaf disease. One key approach is to identify the expression of Pathogenesis-Related (PR)-17 and PKS type III defense proteins in citronella after C. andropogonis infection, serving as a model for counterattacking fungal infection. This study aimed to (i) determine chalcone synthase enzyme activity in C. nardus against C. andropogonis infection, (ii) identify the PR-17 response of C. nardus leaves, and (iii) identify the metabolic variations of flavonoid derivatives of C. nardus leaves. High-Performance Liquid Chromatography was carried out to analyze the enzyme activity. Protein identification was performed using sodium dodecyl sulfate. The variation of secondary metabolites was measured using Gas Chromatography-Mass Spectrometry. The results indicated that the enzyme CHS activity in infected C. nardus leaves had increased significantly compared to healthy leaves. PR-17, PR-2, and PR-3 were only expressed in C. nardus infected with C. andropogonis. Profile of flavonoid-derived metabolites in C. nardus infected with C. andropogonis changed significantly, involving seven flavonoid-derived metabolites. The activation of CHS, accompanied by elevated expression of defense-related proteins and increased levels of flavonoid derivatives, creates a synergistic defense strategy in infected C. nardus. These responses strengthen the plant immunity, restrict fungal colonization, and enhance overall resistance, making them important indicators of plant-pathogen interactions.
Co-Authors ACHMAD DJAZULI Adi Setyo Purnomo Adi Sofyan Ansori, Muhammad Agustina, Niken Ahmad Ridlwan Jamil Aini, Nur Sofiatul AISYAH H. RAMADANI Alfian, Fariz R. Alfiyyana Nurrahma Mawardani Ali Agus ALIFIA HAYA AS-SYIFA Alifiansyah, Mochamad RT. Andi Gita Maulidyah Indraswari Suhri Anggraini, Dhea Anika Sindhya Dewi Ansori, Arif NM. Arya Zulfikar P. Aulia, Halimatus S. B. Saadah Bambang Prajoga Bambang Prajoga Eko Wardoyo Bambang Prajoga Eko Wardoyo, Bambang Prajoga Eko Bezhinar, Tatyana Bonkalo, Tatyana BRUNI FLARANDA YOKU BRUNY FLARANDA YOKU Burkov, Pavel DANI TRI INDRIATI DANI TRI INDRIATI Derkho, Marina Dewangga, Rezha Tanu DINI ERMAVITALINI Dini Ermavitalini Dini Ermavitalini Dio Nurdin Setiawan, Dio Nurdin DWI KUSUMA WAHYUNI DWI KUSUMA WAHYUNI DWI KUSUMA WAHYUNI Dwi Kusuma Wahyuni Dwi Kusuma Wahyuni Dwika Bramasta Edy Setiti Wida Utami Edy Setiti Wida Utami Edy Setiti Wida Utami Edy SW Utami, Edy SW Eko Prasetyo K. Eko Prasetyo Kuncoro Elfianah, Verah ENDANG ARISOESILANINGSIH F. N. Rachman FADHILATUSTSANI SOFIALANA Farid Kamal Muzaki FEBIANTI D. HAPSARI Fetty, Amelia JT. FITRIA ARDIYANI Fitria Ardiyani GALUH AYU RAKASHIWI GALUH AYU RAKASHIWI GALUH AYU RAKHASHIWI GEBBY AGNESSYA ESA OKTAVIA Gudz, Petr GUNAWAN WIBISANA Hamidah . Herdiansyah, Mochammad A. Herdiansyah, Mochammad Aqilah Hermawan, Endang Husna, Etika Ziadana Al IBNUL QAYIM IDA KINASIH Ida Kinasih Ika Sukma Dewi Indah Purnamasari Jakhmola, Vikash Jamil, Ahmad Ridlwan JUNAIRIAH JUNAIRIAH JUNAIRIAH JUNAIRIAH Junairiah Junairiah Khairullah, Aswin Rafif Kharisma, Viol D. Kharisma, Viol Dhea Kholifatul Wanda Putri, Kholifatul Wanda Kovalchuk, Dmitriy F. Leonardo Pascalis Dimas Cahyo Baskoro M. BADRUT TAMAM Mahbubillah, M. Ainul Maksimiuk, Nikolai Mega Rosita Mirzaq Hussein Anwar, Mirzaq Hussein MOCHAMMAD ILHAM MOCHAMMAD ILHAM Munawir Sazali Murtadlo, Ahmad Affan Ali N. I. Oktavitri NASTITI WIJAYANTI NI N. T. PUSPANINGRUM Ni'matuzahroh Ni'matuzahroh Nilna Faizah Fiddarain, Nilna Faizah Nina Ratna Djuita Ni’matuzahroh Ni’matuzahroh Nur Indradewi O Nur Indradewi Oktavitri Pratiwi, Intan A. Prihartini Widiyanti Purnamasari, Indah Putra, Justitia ERP. Putra, Ramadhani PUTUT RAKHMAD PUTUT RAKHMAD PURNAMA PUTUT RAKHMAD PURNAMA Qonitatun Nisa, Qonitatun R.C. Hidayat Soesilohadi Rahadian Zainul Rahayu , Anisa Esti Rahmahana, Ratna Syifa’a RAJIF IRYADI RAMADHANI EKA PUTRA RAMADHANI EKA PUTRA Ramadhani Eka Putra RC HIDAYAT SOESILOHADI RC HIDAYAT SOESSILOHADI RC Hidayat Soesilohadi Rebezov, Maksim RIKA RAFFIUDIN RIKA RAFFIUDIN RIKA RAFFIUDIN Rizaldy, Rafli Rofiatun Solekha Rollando, Rollando Rosvita Tri Jullyanti Santini Ika Rafsanjani SEHANAT PRASONGSUK SEHANAT PRASONGSUK SENJA APRILIA PARAMITA SERAFINAH INDRIYANI Setianingsih, Primanita NM. SHILFIANA RAHAYU Shmeleva, Svetlana Sih Kahono Siska Yulia Rukhmana Siti Nur Hafida Siti Nur Hafida, Siti Nur SITI RIZQIYATUL MUKARROMAH SITI RIZQIYATUL MUKARROMAH Sucipto Hariyanto SUHARYANTO T. Nurhariyati TATIK WARDIYATI Teguh Hari Sucipto, Teguh Hari Thalita Meidina TRI WARSENO Tri Muji Ermayanti Tri Muji Ermayanti Tri Nurhariyati Triono Bagus Saputro TRIONO BAGUS SAPUTRO Triono Bagus Saputro, Triono Bagus Widyananda, Muhammad Hermawan