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All Journal Buletin Peternakan Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences Jurnal Ilmu dan Teknologi Hasil Ternak The Journal of Experimental Life Sciences (JELS) Jurnal Ilmu-Ilmu Peternakan (Indonesian Journal of Animal Science) Jurnal Ilmu Ternak Veteriner Research Journal of Life Science Jurnal Teknologi Pertanian Jurnal Ternak Tropika Briliant: Jurnal Riset dan Konseptual Jurnal Penelitian Pendidikan IPA (JPPIPA) Proceeding INTERNATIONAL SEMINAR IMPROVING TROPICAL ANIMAL PRODUCTION FOR FOOD SECURITY JURNAL ILMIAH PETERNAKAN TERPADU Jurnal Ilmiah Fillia Cendekia Jurnal Nutrisi Ternak Tropis (JNT) Bantara Journal of Animal Science Jurnal Agripet
Eko Widodo
Lecturer, Faculty Of Animal Science, University Of Brawijaya, Indonesia
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Civil Engineering, Building, Construction & Architecture Computer Science & IT Earth & Planetary Sciences Education Environmental Science Immunology & microbiology Materials Science & Nanotechnology Medicine & Pharmacology Neuroscience Physics Veterinary Other

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Next-Generation Sequencing of the Microbial Community Profile In Free-Range Chicken (Gallus gallus domesticus) Cecum from East Nusa Tenggara Province: Microbial community profile in free-range chicken (Gallus gallus domesticus) cecum Eufrasia Reneilda Arianti Lengur; Yoga Dwi Jatmiko; Endang Arisoesilaningsih; Eko Widodo
Journal of Tropical Life Science Vol. 13 No. 2 (2023)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.13.02.13

Abstract

Free-range chicken is livestock reared to support the humans' need for protein alongside its ritualistic use in traditional medicine to treat diseases. This study investigates the diversity of bacterial communities in the free-range chicken cecum reared in different East Nusa Tenggara Province localities comprising Sambi 1, Sambi 2 villages, Labuan Bajo, and Kupang City. The extracted chromosomal DNA was subjected to next-generation sequencing using the V3-V4 region primers. Results revealed that the Kupang chicken cecum had the highest total tags, while the Sambi 2 village recorded the lowest. Similarly, Sambi 2 chicken cecum exhibited the highest unique tags (6662) and OTUs number (1261), while the Kupang samples gave the lowest at 2550 and 745, respectively. The Shannon diversity index for bacterial diversity demonstrated that cecum samples from Labuan Bajo (5.679) were more diverse than Sambi 1 (5.378), Sambi 2 (5.653), and Kupang samples (3.77). The bacteria with the highest dominance index (0.935) was found in Sambi 2, while the lowest was observed in the Kupang samples (0.082). The three bacterial phyla showing the highest relative abundance were those from Sambi 1, Sambi 2, and Labuan Bajo cecum samples, comprising Firmicutes, Bacteroidota, and Actinobacteriota.Conversely, the Kupang samples showed an abundance of Firmicutes, Bacteroidota, and Campilobacterota, compared to the Lactobacillus-dominated Kupang, Sambi 1, and Sambi 2 chicken cecum samples. The highest relative abundance for Bifidobacterium occurred in Sambi 1 and Sambi 2 chicken cecum samples, the Kupang samples were Campylobacter dominated, and Olsenella was abundant in the Labuan Bajo samples. Intriguingly, the bacterial composition in the tested chicken cecum samples largely comprised beneficial bacteria such as the lactic acid bacteria group. This bacterial group can be further characterized for obtaining probiotic cultures that could improve the health of free-range chickens.
Co-Authors Achmanu . Adli, Danung Nur Agus Erta Setyawan Aji Sukoco Akhmad Zaenal Wijaya Albert Podung Anna Lidiyawati Awang Tri Satria Azmi, Muhamad Malikul Betty Bagau Bondan Prakoso, Bondan Cherlie Sarajar Dadan Rosana Danial Mukhtar Husada David Kurniawan David Kurniawan Dedes Amertaningtyas Derana Tri Mustikawatie Dian Rohmawati Didik Setyawarno Diyanti Ayu Apriana Drajad Adi Panggayu Dwi Kiat Puspitasari Dwi Sunarti Edhy Sudjarwo Edhy Sudjarwo Edjeng Suprijatna Endang Arisoesilaningsih Endang Pudjihastuti, Endang Eufrasia Reneilda Arianti Lengur Faizal Andri Florencia N. Sompie Hafsah Hafsah Halim Natsir Hartutik (Hartutik) Hartutik Hartutik Heli Tistiana Heni Setyo Prayogi Herly Evanuarini Hudan Allama Imam Thohari Indah Puspita Sari Irfan H. Djunaidi Irfan H. Junaidi Jein Rinny Leke Jelita, Denisya Disma Khusna, Adinda Lailatul Koen M Afni Rahman laudita Setia Busta M Halim Natsir M. Halim Natsir Mahfud , Lutfi Djauhari Maria Yohanista Ma’rifah, Binti Muhammad Halim Natsir Muhammad Tahir Mustofa, Fatmawati Nimas Dwi Sukmawardani Nining Haryuni Nurina Rahmawati Osfar Sjofjan Osfar Sofjan Permana, Blumen Komaladevi Ratna Siahaan Ria Dewi Andriani Rina Muryani Romy Abdillah Ramadhan Roro Rianthie Jessieca A.G Rositawati Indrati Ruli Nanda Pratama Sandha Octavia Sarjana, Teysar Adi Setianingsih, Wita Shawqi, Athallah Yusuf Shihah, Hanna Dzawish Sofyan, Ariya Sri Kismiati, Sri Sri Wahjuningsih Sri Wahyuningsih Syafrial, Rizqi Rachmat Wahidin Mardiono Swantho Menggi Emma Wahyuni, Nur Maulida Wita Setianingsih Y A Tribudi Yoga Dwi Jatmiko Yuli Indriani