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All Journal JURNAL KIMIA SAINS DAN APLIKASI Pharmaciana: Jurnal Kefarmasian Indonesian Journal of Cancer Chemoprevention MPI (Media Pharmaceutica Indonesiana) Jurnal Kedokteran Gigi Universitas Padjadjaran Acta Pharmaciae Indonesia : Acta Pharm Indo ALCHEMY Jurnal Penelitian Kimia Indonesian Journal of Chemistry Jurnal Kartika Kimia JKPK (Jurnal Kimia dan Pendidikan Kimia) Pharmacy Reports Kolaborasi Jurnal Pengabdian Masyarakat Jurnal Ilmiah Berkala: Sains dan Terapan Kimia Mandala of Health : A Scientific Journal Molekul: Jurnal Ilmiah Kimia Journal of Applied Science for Pharmaceuticals and Health
Fareza, Muhamad Salman
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Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Dentistry Education Energy Engineering Environmental Science Health Professions Immunology & microbiology Materials Science & Nanotechnology Medicine & Pharmacology Nursing Public Health

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Free Chlorine Determination in Disinfectant Product using Visible Spectrophotometry based on Prussian Blue Degradation Wasito, Hendri; Siagian, Defi Srium; Fareza, Muhamad Salman
Acta Pharmaciae Indonesia Vol 9 No 2 (2021): Acta Pharmaciae Indonesia : Acta Pharm Indo
Publisher : Pharmacy Department, Faculty of Health Sciences, Jenderal Soedirman University, Purwokerto, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20884/1.api.2021.9.2.5371

Abstract

Disinfectant products with excessive chlorine could be dangerous for health and need quality control. It is important to develop an analytical method for monitoring product quality. The main objective of this work is to develop an alternative method and evaluate the analytical performance of visible spectrophotometry for determining free chlorine in disinfectant products based on the Prussian blue decomposition process. The capability of chlorine to oxidize ferrous to ferric ions makes the Prussian blue generated by ferrosulfate and potassium ferricyanide is decomposed and measured by spectrophotometer. The formation of Prussian blue was improved by optimizing some reaction conditions and assessing incubation time. Linearity, analytical concentration range, precision, accuracy, detection limit, and quantitation limit parameters were among the examined analytical parameters. The results showed that the optimum concentration of ferrosulfate, potassium ferysianide, and hydrochloric acid for Prussian blue formation was 2.0 mmol L-1, 3.0 mmol L-1, and 0.5 mol L-1, respectively, with 15 minutes incubation time after chlorine addition. Analytical performance parameters seemed appropriate for routine analysis purposes. The developed method can also be applied as an alternative analytical method to determine the free chlorine concentration of disinfection products in the market.
Phytochemical screening and purification of n-hexane fraction of Calophyllum soulattri leaves Sunarto, Sunarto; Yuliasari, Agnes; Susilowati, Sri Sutji; Wasito, Hendri; Wijaya, Triyadi Hendra; Fareza, Muhamad Salman
Acta Pharmaciae Indonesia Vol 10 No 2 (2022): Acta Pharmaciae Indonesia : Acta Pharm Indo
Publisher : Pharmacy Department, Faculty of Health Sciences, Jenderal Soedirman University, Purwokerto, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20884/1.api.2022.10.2.5858

Abstract

Background: Calophyllum soulattri Burm F. is widely utilized in traditional medicine. It is necessary to identify secondary metabolites from C. soulattri leaves to determine the pharmacologically active chemicals. Objective: This study aimed to screen the phytochemical content and purify the n-hexane fraction of C. soulattri leaves from Banyumas, Indonesia. Methods: The n-hexane fraction was macerated with methanol, followed by liquid-liquid fractionation with n-hexane. The n-hexane fraction was tested for flavonoids, triterpenoids/steroids, saponins, and phenols using the test tube method. In addition, the compounds were purified using column chromatography. The purified compound was identified by the Liebermann-Burchard reagent, which was compared with commercially available steroid drugs as reference. Results: Phytochemical analysis revealed that the n-hexane fraction of C. soulattri leaves contained secondary metabolites such as flavonoid, steroid, and phenol compounds. Analyses with the Liebermann-Burchard reagent indicated that the purified compound was potentially a steroid. Conclusion: The compound extracted from the n-hexane fraction of C. soulattri leaves was expected as a steroid.
Evaluation of natural compounds as VEGFR-2 inhibitors for breast cancer therapy: insights from molecular docking and drug-likeness analysis Aprilia, Vika; Sarmoko; Fareza, Muhamad Salman; Baroroh, Hanif Nasiatul; Choironi, Nur Amalia
Pharmacy Reports Vol. 4 No. 2 (2024): Pharmacy Reports
Publisher : Indonesian Young Scientist Group and UPN Veteran Jakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.51511/pr.82

Abstract

Breast cancer remains one of the most common cancers worldwide, with VEGFR-2 (KDR) playing a key role in tumor angiogenesis. Inhibiting VEGFR-2 is a promising therapeutic strategy. Natural compounds are increasingly studied for their potential to inhibit VEGFR-2. This study aims to assess the binding affinity of 11 natural compounds (andrographolide, alpha-mangostin, pinostrobin, pinocembrin, ethyl-p-methoxycinnamate (EPMS), xanthorrhizol, galangin, gamma-mangostin, curcumin, cinnamaldehyde, and alashanoid B) to the VEGFR-2 protein through molecular docking and Lipinski's rule analysis, identifying promising candidates for breast cancer treatment. Molecular docking simulations were performed for 11 compounds and sunitinib as a control, with binding energies and interactions analyzed. The compounds were also evaluated for drug-likeness using Lipinski’s rule of five. Curcumin showed the highest binding affinity to VEGFR-2 with a binding energy of -9.9 kcal/mol, surpassing sunitinib (-9.4 kcal/mol). Key interactions were observed with active site residues Cys919 and Asp1046. All tested compounds met the criteria for oral bioavailability per Lipinski’s rules. Curcumin demonstrates potential as a VEGFR-2 inhibitor due to its favorable binding affinity and drug-like properties. Enhancing curcumin’s bioavailability is recommended for effective therapeutic application.
Optimizing Ultrasound-Assisted Extraction Methods of Etlingera elatior Using Response Surface Methodology for High Performance Liquid Chromatography Fingerprinting Wasito, Hendri; Ridha, Kirana Shafa; Fareza, Muhamad Salman
Jurnal Kimia Sains dan Aplikasi Vol 28, No 7 (2025): Volume 28 Issue 7 Year 2025
Publisher : Chemistry Department, Faculty of Sciences and Mathematics, Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/jksa.28.7.355-361

Abstract

Kecombrang flower (Etlingera elatior) is widely used in traditional medicine and contains various metabolites. High-performance liquid chromatography (HPLC) fingerprinting can be employed as an analytical technique to comprehensively reveal the metabolite profile, while ultrasound-assisted extraction (UAE) was developed to optimize metabolite extraction. This study aims to determine the optimal extraction conditions for E. elatior and apply these conditions in HPLC fingerprinting. This study utilized central composite design (CCD) and response surface methodology (RSM) to optimize the extraction of E. elatior flowers, focusing on extraction time and the simplicia-to-solvent ratio. The optimal extraction results were applied to HPLC fingerprints of the flowers, leaves, and stems of E. elatior. The chromatograms were further analyzed using chemometric methods, namely principal component analysis (PCA), partial least squares discriminant analysis (PLSDA), and hierarchical cluster analysis (HCA) to classify and interpret the variability of metabolite profiles in different parts of E. elatior. The optimal UAE conditions were determined to be a time of 46 minutes and a simplicia-to-solvent ratio of 1:25 (g/mL). Chemometric analysis revealed that the samples were well clustered, which reflects the similarity of metabolites among them. The HCA further showed that the metabolite profile of E. elatior flowers is closely related to that of the stems.
Bioinformatics Analysis of Rho GTP-ase Activating Protein 35 (ARHGAP35) in Breast Cancer Migration Febrian, Dicky Rizky; Setyono, Joko; Fareza, Muhamad Salman; Choironi, Nur Amalia; Fadlan, Arif; Sarmoko, Sarmoko
Indonesian Journal of Cancer Chemoprevention Vol 12, No 3 (2021)
Publisher : Indonesian Society for Cancer Chemoprevention

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14499/indonesianjcanchemoprev12iss3pp161-169

Abstract

Breast cancer is a second deadly cancer after lung cancer worldwide. Progression of cancer is driven by mutated cancer drive gene such as ARHGAP35. This study aims to analyze the role of ARHGAP35 in the growth and development of breast cancer cells. ARHGAP35 expression level was analyzed using Oncomine (p-value<1E-4; gene rank top 10%). Overall survival (OS) and disease-free survival (DFS) were evaluated by using GEPIA (median cutoff; HR displayed with 95% CI). STRING was used for analyzing the protein-protein interaction network, while WEBGESTALT for KEGG pathway and gene ontology (GO) of ARHGAP35 and associated proteins and cBioPortal for gene mutation. ARHGAP35 was overexpressed in several types of breast cancer, namely invasive ductal breast carcinoma (IDC), invasive ductal and lobular breast carcinoma (IDLC), invasive lobular breast carcinoma (ILC), male breast carcinoma, and mixed ductal and lobular carcinoma (MDLC). High expression of ARHGAP35 had significantly lower OS (p=0.045) compared to low expression of ARHGAP35 and the difference in DFS was not significant (p=0.98). ARHGAP35 interacted with RHOA, RHOB, RHOC, RHOD, RASA1, RND1, RAC1, CDC42, FYN and SRC. KEGG pathway and GO analysis showed that these proteins are highly involved in actin-based processes through adherent junction, axon guidance, focal adhesion, regulation of actin cytoskeleton, and tight junction. Mutation rate analysis showed 34 missense, 29 truncating, 3 fusion, and 1 in frame on ARHGAP35. Taken together, ARHGAP35 may involve in the growth and development of breast cancer through regulation of actin cytoskeleton pathway.Keywords: ARHGAP35, breast cancer, KEGG pathway, mutation rate, actin cytoskeleton.
Synthesis and Cytotoxic Activity of Methoxylated Chalcones in Breast Cancer MCF-7 and Prostate Cancer DU-145 Cell Lines Fareza, Muhamad Salman; Samudra, Genta Hafied Naga; Asrada, Syahdan; Fischellya, Dafi; Wijaya, Triyadi Hendra; Choironi, Nur Amalia; Wasito, Hendri; Suhesti, Tuti Sri; Mustikaningtyas, Ika; Rehana, Rehana; Setiyabudi, Lulu; Sarmoko, Sarmoko
Molekul Vol 20 No 3 (2025)
Publisher : Universitas Jenderal Soedirman

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20884/1.jm.2025.20.3.13612

Abstract

Chalcones, a class of naturally occurring compounds, exhibit a broad spectrum of biological activities, including anticancer properties. In this study, a series of methoxylated chalcones were synthesized via Claisen-Schmidt condensation and evaluated for cytotoxic activity against breast cancer MCF-7 and prostate cancer DU-145 cell lines. The synthetic route involved Claisen-Schmidt condensation, leading to various methoxy-substituted chalcone derivatives. The structures of the synthesized chalcones were confirmed through NMR and mass spectrometry. Cytotoxicity was assessed using the PrestoBlue assay, with 4-bromochalcone (compound 2) displaying the highest cytotoxic activity against MCF-7 cancer cell lines (IC50 = 26.99 µM). These results indicate that methoxylated chalcones hold promise as potential lead compounds for the development of new anticancer agents targeting breast and prostate cancer.
Analisis Target Protein Pada Penyakit Kanker Serviks dari Senyawa Ethyl Para Methoxy Cinnamate Secara In Silico Ayunda Tasya Hapsari; Muhamad Salman Fareza; Nur Amalia Choironi
Journal of Applied Science for Pharmaceuticals and Health Vol 1 No 2 (2024): Journal of Applied Science for Pharmaceuticals and Health (Desember)
Publisher : Centre of Applied Science for Pharmaceutical Science Universitas Jenderal Soedirman

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20884/1.jasph.2024.1.2.14999

Abstract

Kasus kanker serviks merupakan kanker tertinggi ke-5 diantara kanker lainnya di dunia. Amplifikasi DNA adalah salah satu mekanisme terjadinya kanker ini. Karena itu, keparahan penyakit ini bisa berkembang. Gen yang berperan dalam perkembangan kanker serviks adalah CCNB1, CCNB2, CDK, dan MMP. Terdapat masalah pada beberapa obat yang menargetkan beberapa protein tersebut seperti erlotinib, alvocidib, marimastat, dan lain-lain. Oleh karena itu, penemuan obat baru untuk mengatasi kasus ini perlu dilakukan. Senyawa Ethyl Para Methoxy Cinnamate (EPMC) mempunyai aktivitas sitotoksik IC50 sebesar 35 μg/ml yang bersifat sangat sitotoksik terhadap sel HeLa. Penelitian ini bertujuan untuk mengetahui potensi target dan profil docking molekul senyawa EPMC yang berpotensi menghambat kanker serviks. Pencarian data menggunakan database Pubchem, SWISS Target Prediction, PubMed, STRING, dan PDB. Situs Webgestalt dilakukan untuk analisis Geneontologi, jalur KEGG, dan asosiasi obat. Hasil PTTGs digunakan untuk melihat interaksi antara protein menggunakan STRING dan gen hub 10 teratas dengan cystoscape. Simulasi docking dilakukan untuk menentukan profil mooring. Hasil: Target potensial EPMC adalah EGFR, CCND1, CDK4, CDK2, CCNA1, HGF, MMP9, CCNE1, CCNB1, CDH1. Hasil simulasi docking menunjukkan MMP9 memiliki energi ikatan yang lebih rendah dibandingkan kontrol positif, yaitu sekitar -6,9 kkal/mol. Oleh karena itu, MMP9 berpotensi menjadi target EPMC melalui jalur persinyalan PI3K-Akt. Kesimpulan: Senyawa EPMC dapat menghambat pertumbuhan sel kanker dengan menargetkan MMP9 melalui jalur pensinyalan PI3K-Akt.
Efek Penambatan Senyawa Demetoksikurkumin Dan Bisdemetoksikurkumin Terhadap Protein LSD1 Nadia Sayyidadah Aulia; Muhamad Salman Fareza; Triyadi Hendra Wijaya; Nahrul Hasan; Putri Khaerani Cahyaningrum; Ari Wahyudi
Journal of Applied Science for Pharmaceuticals and Health Vol 2 No 1 (2025): Journal of Applied Science for Pharmaceuticals and Health (June)
Publisher : Centre of Applied Science for Pharmaceutical Science Universitas Jenderal Soedirman

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20884/1.jasph.2025.2.1.16466

Abstract

Beta-talasemia merupakan penyakit genetik pada sintesis hemoglobin di dalam sel darah merah yang ditandai dengan menurunnya produksi β-globin. Senyawa kurkumin diketahui dapat meningkatkan kadar HbF pada sel K562. Senyawa demetoksikurkumin dan bisdemetoksikurkumin diketahui memiliki stabilitas dan bioavaibilitas yang lebih baik dari kurkumin. Penelitian ini bertujuan untuk melihat interaksi senyawa demetoksikurkumin dan bisdemetoksikurkumin pada protein LSD1 secara in silico. Penelitian eksperimental yang dilakukan terbagi dalam dua tahap. Pertama, validasi metode yang meliputi pengunduhan struktur LSD1 (PDB ID: 6KGP), preparasi struktur protein dengan menghilangkan molekul air dan memisahkan molekul protein dan ligan natif, penambatan kembali dengan Ligan natif menggunakan AutoDock Vina dan penghitungan nilai RMSD. Kedua, penambatan molekuler senyawa demetoksikurkumin dan bisdemetoksikurkumin dengan protein LSD1 menggunakan koordinat hasil validasi yang valid dan visualisasi penambatan dengan menggunakan BIOVIA Discovery Studio 2020. Hasil validasi menunjukkan nilai RMSD yaitu 1,402 Å. Energi ikatan terendah untuk protein LSD1 yaitu -10,4 kkal/mol dan -10,2 kkal/mol untuk senyawa demetoksikurkumin dan bisdemetoksikurkumin. Residu asam amino pada LSD1 yang berperan pada pengikatan senyawa uji demetoksikurkumin yaitu Thr624; Val288 dan Arg316. Residu asam amino pada LSD1 yang berperan pada pengikatan senyawa uji demetoksikurkumin yaitu Thr624; Leu659; Val811; Arg316; Leu625; Tyr761 dan Trp751. Penelitian ini menunjukkan bahwa senyawa demetoksikurkumin menunjukkan hasil yang lebih baik dan interaksi yang lebih potensial pada protein LSD1 dibandingkan bisdemetoksikurkumin
GC-MS Analysis and Antibacterial Activity of Essential Oils of Five Syzygium Species Leaves Nur Amalia Choironi; Sunarto Sunarto; Esti Dyah Utami; Muhamad Salman Fareza
ALCHEMY Jurnal Penelitian Kimia Vol 19, No 1 (2023): March
Publisher : UNIVERSITAS SEBELAS MARET (UNS)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20961/alchemy.19.1.67401.61-67

Abstract

The essential oil can inhibit pathogenic bacterial activities, which can be developed to be a natural preservative for food. This research aimed to evaluate the antibacterial activity of the essential oils from five species Syzygium on Bacillus cereus, Escherichia coli, Listeria monocytogenes, Staphylococcus aureus, and Salmonella enterica sv Typhimurium. The research results show that five Syzygium sp. Essential oils have moderate antibacterial properties with a minimum inhibitory concentration (MIC) value of 250 ‒ 500 μg/mL. S. polyanthum essential oils have the highest antibacterial activity than the rest species on B. cereus at 250 μg/mL. Meanwhile, the essential oil of S. polycephalum also showed the highest antibacterial activity with a MIC value of 250 μg/mL against L. monocytogenes. The chemical component analysis using GC-MS shows the main constituents farnesol, nerolidol, and n-decanal, presenting the antibacterial effect.
Co-Authors . Harwoko Ade Martinus Ade Martinus Afif Hariawan Pratama Agnes Yuliasari Anggraeni, Vina Juliana Aprilia, Vika Ari Asnani Ari Wahyudi Asrada, Syahdan Ayunda Tasya Hapsari Beti Pudyastuti Beti Pudyastuti Choironi, Nur Amalia Defi Srium Siagian Didin Mujahidin Dina Parika Dody Novrial Dody Novrial, Dody Dwi Utami Anjarwati Elesenda May GIta Esti Dyah Utami Esti Dyah Utami Eviyana Eviyana Fadlan, Arif Fadlan, Arif Fajar Wahyu Pribadi Febrian, Dicky Rizky Fischellya, Dafi Giri Gumelar Hanif Nasiatul Baroroh Harwoko Harwoko Hasan, Nahrul Hendri Wasito HENDRI WASITO Hening Pratiwi Irse Priyaganda Bani Musa Joko Setyono Joko Setyono Joko Setyono Kaefiyah Nurul Insani Lela Lailatul Khumaisah Mustikaningtyas, Ika Nadia Sayyidadah Aulia Nia Kurnia Sholihat Nilta Dizzania Nur Amalia Choironi Nur Amalia Choironi Nur Amalia Choironi Nuryanti Nuryanti Ponco Iswanto Putri Khaerani Cahyaningrum Putri Nur'afni Sa'adah Rehana Rehana Rehana Rehana Rehana, Rehana Ridha, Kirana Shafa Rifki Febriansah Rizka Hidayati Rizki Akbar Ramadhan Samudra, Genta Hafied Naga Sarmoko Sarmoko Sekar Cahyo Nurani Setiyabudi, Lulu Siagian, Defi Srium Siska Febdian Nitami Soenarto Soetomo Sri Sutji Susilowati Sri Sutji Susilowati Sunarto Sunarto Sunarto Sunarto Sunarto Sunarto Sunarto Sunarto Sunarto Sunarto Sunarto, Sunarto Thianti Sylviningrum Triyadi Hendra Triyadi Hendra Wijaya Triyadi Hendra Wijaya Tryandika Telaumbanua Tuti Sri Suhesti Vintya Roosalinda Permatasari Wahyu Dwi Kusdaryanto Warsinah Yuliasari, Agnes