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All Journal MANAJEMEN HUTAN TROPIKA Journal of Tropical Forest Management ILMU KELAUTAN: Indonesian Journal of Marine Sciences Peronema Forestry Science Journal FORESTA BIOTROPIA - The Southeast Asian Journal of Tropical Biology SELAPARANG: Jurnal Pengabdian Masyarakat Berkemajuan Jurnal Ilmu dan Teknologi Kayu Tropis Sarwahita : Jurnal Pengabdian Kepada Masyarakat PERENNIAL Journal of Sylva Indonesiana ABDI MOESTOPO: Jurnal Pengabdian pada Masyarakat Prosiding Konferensi Nasional PKM-CSR Jurnal Sylva Lestari Repong Damar: Jurnal Pengabdian Kehutanan dan Lingkungan Jurnal Pengabdian Masyarakat Bangsa Global Forest Journal Journal of Fisheries & Marine Jurnal Penelitian Hasil Hutan
Arida Susilowati Iswanto
Center Of Excellence For Mangrove, Universitas Sumatra Utara, Medan, 20155. Indonesia
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Journal : Journal of Fisheries

 1 
Implementation of 16S rRNA Gene for Fish and Shrimp Barcoding in Mangrove Ecosystems in North Sumatra and Aceh, Indonesia Hatika Hairani; Rizka Amelia; Ipanna Enggar Susetya; Arida Susilowati; Yuntha Bimantara; Tadashi Kajita; Mohammad Basyuni
Jurnal Ilmiah Perikanan dan Kelautan Vol. 15 No. 1 (2023): JURNAL ILMIAH PERIKANAN DAN KELAUTAN
Publisher : Faculty of Fisheries and Marine Universitas Airlangga

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.20473/jipk.v15i1.36686

Abstract

Highlight Research The genetic diversity of fish and shrimp from mangrove habitats was relatively substantial, with a heterozygosity of 0.926 and the exception of Langsa samples. AMOVA revealed that the diversity among individuals in the populations were higher compared to those within individuals. DNA barcode in mangroves is useful in developing mangrove conservation and restoration initiatives   Abstract Fish and shrimp are among the species that are vulnerable to high level of disturbance in mangrove ecosystem. This study aimed to investigate the implementation of 16S rRNA gene for fish and shrimp barcoding in mangrove ecosystems in North Sumatra and Aceh, Indonesia. 50 samples fresh fish and shrimp were collected from five mangrove ecosystems in North Sumatra, namely Belawan, Lubuk Kertang, Percut Sei Tuan, and Pulau Sembilan and Langsa of Aceh for DNA extraction process. The research was divided into four activities: sample collection, DNA isolation, PCR amplification, and data analysis. DNA was extracted using kit extraction (kit Reliaprep gDNA Tissue Miniprep System) and with PCR amplification. Genetic parameters were analyzed using Gen Alex 6.51 software and the relationship between sites was examined using the MVSP 3.22. The genetic diversity of fish and shrimp from mangrove habitats was relatively substantial, according to the findings, with a heterozygosity of 0.926, with the exception of Langsa samples, which were only identified in subclass A1. Genetic relationship between sites revealed that all samples clustered into two branches and were randomly dispersed within each site. This work confirmed the 16S rRNA gene worked for fish and shrimp barcoding in mangrove ecosystems, North Sumatra and Aceh, Indonesia and our findings are expected to be useful in developing mangrove conservation and restoration initiatives.
Co-Authors Agung Wibowo Agus Purwoko Ahmad Baiquni Rangkut Ahmad Baiquni Rangkuti Ahmad Baiquni Rangkuti Alfan Gunawan Ahmad Ameilia Zuliyanti Siregar Aminuyati Anggita Amelati Harahap Anita Zaitunah Anita Zaitunah Apri H Iswanto Apri Heri Iswanto Arif NURYAWAN Arrofaha, Nawwall Atok Subiakto Attarik, Nuriskia Baiquni Rangkuti, Ahmad Bastian Samuel P. Ginting Bejo Slamet Corryanti Corryanti Cut Rizlani Kholibrina Darli, Viny Volcherina Delvian Delvian Deni Elfiati Deni Elfiati Deni Elfiati Deni Elfiati Desrita Desrita Eling Tuhono Erman Munir Evi Sribudiani Ewi Irfani Fifi Gus Dwiyanti Fitra Yuda Pratama Fitra Yuda Utama Hafizah Arinah Hafizah Arinah Harefa, Meilinda Suriani Harisyah Manurung Hatika Hairani Henti Hendalastuti Rachmat Ida Mallia Ginting Imam Wahyudi Indrawan, Imam Wahyudi Ipanna Enggar Susetya Irsyad Kamal Iskandar Z Siregar Iskandar Z. Siregar ISKANDAR ZULKARNAEN SIREGAR Iwan RISNASARI Jajang Sutiawan Jajang Sutiawan Jelly Permana Purba Kansih Sri Hartini Kansih Sri Hartini KUSUMADEWI SRI YULITA Laswi Irmayanti, Laswi Lestari, Andi Tri Luthfi Hakim Luthfi Hakim M. Basyuni M. Taufan Mariah Ulfa Mariah Ulfa Masitta Tanjung Melinda Suriani Harefa Moehar Maraghiy Harahap Mohammad Basyuni Muhammad Irvan Rizmi Muhammad Mardhiansyah Muhammad Zyldanvi Bahri Mutya Kana Purba Nelly Anna Netti Herlina OK Hasnanda Syahputra OK Hasnanda Syahputra Onrizal Onrizal Pebriandi, Pebriandi Pelawi, Deanova Frestiana Br Pindi Patana Prijanto Pamoengkas Purwoko, Agus Rachmat, Henti Hendalastuti Ridwanti Batubara Ridwanti Batubara Rifqi Ulfah Nikmah Ritonga, Faujiah Nurhasanah Ritonga, Lia Anggraini Rizka Amelia Rizka Amelia Rudi Hartono Rudi Hartono Ryzki Pebriansyah Sahab, Ahmad Samsuri Samsuri Samsuri, Samsuri Sirait, David Raymod Siregar, Ulfa Juniarti Somadona, Sonia Sucipto, Tito Sulistyono, Nurdin Supriyanto Supriyanto Supriyanto Supriyanto Suri Fadhilla Susila, Susila Tadashi Kajita Tadashi Kajita Tito Sucipto Tuhono, Eling Yossi Oktorini Yuntha Bimantara Zulkifli Nasution Zulkifli Nasution