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All Journal TELKOMNIKA (Telecommunication Computing Electronics and Control) Bulletin of Electrical Engineering and Informatics Jurnal Ilmiah Teknik Elektro Komputer dan Informatika (JITEKI) SITEKIN: Jurnal Sains, Teknologi dan Industri Journal of Environmental Engineering and Sustainable Technology Jurnal Teknologi Informasi dan Ilmu Komputer Jurnal POINTER JURNAL PENGABDIAN KEPADA MASYARAKAT Journal of Information Technology and Computer Science Jurnal Pengembangan Teknologi Informasi dan Ilmu Komputer SISFO Jurnal Inovasi Hasil Pengabdian Masyarakat (JIPEMAS) JAST : Jurnal Aplikasi Sains dan Teknologi Indonesian Journal of Electrical Engineering and Computer Science Tri Dharma Mandiri: Diseminasi dan Hilirisasi Riset Kepada Masyarakat (Jurnal Pengabdian Kepada Masyarakat) Kohesi: Jurnal Sains dan Teknologi Journal of Information System and Application Development
Lailil Muflikhah
Fakultas Ilmu Komputer, Universita Brawijaya, Malang, Indonesia
Arts Humanities Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Computer Science & IT Control & Systems Engineering Decision Sciences, Operations Research & Management Economics, Econometrics & Finance Education Electrical & Electronics Engineering Energy Engineering Environmental Science Health Professions Industrial & Manufacturing Engineering Languange, Linguistic, Communication & Media Mechanical Engineering Public Health Social Sciences Other

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Journal : Bulletin of Electrical Engineering and Informatics

 1 
Profiling DNA Sequence of SARS-Cov-2 Virus Using Machine Learning Algorithm Lailil Muflikhah; Muh. Arif Rahman; Agus Wahyu Widodo
Bulletin of Electrical Engineering and Informatics Vol 11, No 2: April 2022
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/eei.v11i2.3487

Abstract

Corona virus disease-19 (COVID-19) is growing rapidly because it is an infectious disease. This disease is caused by a virus belonging to the type of DNA virus with very diverse genetics. This study proposes a feature extraction method using k-mer to obtain nucleotide frequencies in protein coding. In profiling viral DNA sequences, this study proposes to obtain similarity by country using hierarchical k-means, where the results are averaged by the hierarchical clustering method and then find the initial cluster center. The experimental results show that the silhouette, purity, and entropy are 0.867, 0.208, and 0.892, respectively. Then, we apply the Gini index feature selection to find the important components as characteristics in each country. The selected components are implemented using the ensemble method, Random Forest, to evaluate their performance. The experimental results showed high performance, including sensitivity, accuracy, specificity, and area under the curve (AUC).
Co-Authors A. Bachtiar , Fitra Abdurrachman Bachtiar, Fitra Achmad Jafar Al Kadafi, Achmad Jafar Addin Sahirah, Rafifa Adinugroho, Sigit Adnawirya Pratama, Cendikia Agung Setiyoaji Agus Ardiansyah Agus Wahyu Widodo Agus Wahyu Widodo, Agus Wahyu Ahmad Nur Royyan Ahmad Wildan Attabi' Ahmad Zaki Akbar Grahadhuita Al Kautsar, Prima Daffa Aldi Bagus Sasmita Aldino Caturrahmanto Anis Zubair, Anis Annisaa Amalia Safitri Aqmal Maulana Tisno Nuryawan Ardiza Dwi Septian Arief Andy Soebroto Ashidiq, Muhammad Fihan Aulia Herdhyanti Bachtiar, Harsya Baharudin B. Baharum Baihaqi, Galih Restu Bajsair, Fath' Hani Sarli Bayu Laksana Yudha Bayu Rahayudi Bening Herwijayanti Bintang, Tulistyana Irfany Brillian Ghulam Ash Shidiq Budi Darma Setiawan Candra Dewi Candra Dewi Daneswara Jauhari Daneswara Jauhari, Daneswara Darma Setiawan, Budi Darmawan, Riski Daud, Nathan Dewi, Buana Dhimas Wida Syahputra Dian Eka Ratnawati Dimas Joko Hariyanto Dimas Joko Haryanto Duwi Purnama Sidik Edy Santoso Edy Santoso Eni Hartika Harahap Eva Agustina Ompusunggu Faris Dinar Wahyu Gunawan Fatimah Az-Zahra, Adinda Feri Eko Herman Firdaus, Nada Fitra Abdurrachman Bachtiar Fitrotuzzakiyah, Shafira Puspa Gessia Faradiksi Putri Gumelar, Dimas HANA RATNAWATI Hanggar Wahyu Agi Prayogo Haris, Asmuni Haryanto, Dimas Joko Hinandy Nur Anisa Hoar, Wilhelmina Sonya Ichsan Achmad Fauzi Iftinan, Salsa Nabila Imam Cholissodin Imam Cholissodin Imam Cholissodin Imam Cholissodin Indriati Indriati Indriati Indriati Issa Arwani Kautsar, Ahmad Izzan Khairunnisa, Alifah Ksatria Bhuana Kukuh Bhaskara Kukuh Haryobismoko Kurnianingtyas, Diva Laily Putri Rizby Luqyana, Wanda Athira Luthfi Afrizal Ardhani M. Ali Fauzi M. Tanzil Furqon, M. Tanzil Marine Putri Dewi Yuliana Marji . Marji Marji Maulana, Muhammad Taufik Maulidiya, Afifulail Maya Nur Muh Arif Rahman Muh Hamim Fajar Muh. Arif Rahman Muhammad Abduh Muhammad Fajri Muhammad Ferian Rizky Akbari Muhammad Rafif Al Aziz MUHAMMAD SYAFIQ Muhammad Tanzil Furqon Muhammad Wafiq Mukhrodi, Dillah Lyra Nabil Auliya, Muhammad Hanif Nashi Widodo Nisa, Lisa N. Noor Fatyanosa, Tirana Novanto Yudistira Nurfansepta, Amira Ghina Nurhidayati Desiani Nurul Dyah Mentari Nurul Hidayat Nurul Hidayat Olivia Bonita Puji Indah Lestari Puspita Sari Putra Pandu Adikara Putri, Rania Aprilia Dwi Setya Rachmad Indrianto Rachmatika, Isnayni Sugma Rafifah Nawawi, Danisha Ramadhan, Galang Gilang Randi Pratama Nugraha Randy Cahya Wihandika Ratih Kartika Dewi Rekyan Regarsari Mardhi Putri Rekyan Regasari Mardi Putri, Rekyan Regasari Mardi Rendi Cahya Wihandika Rheza Raditya Andrianto Ria Ine Pristiyanti Rika Raudhotul Rizqiyah Riski Darmawan Riyanarto Sarno Rizal Setya Perdana Rizal Setya Perdana Robbiyatul Munawarah Rowan Rowan Rusydi Hanan, Muhammad Satrio Hadi Wijoyo Setiana, Maya Setya Perdana, Rizal Shalsadilla, Shafatyra Reditha Sholeh, Mahrus Sukma, Lintang Cahyaning Supraptoa Supraptoa Surya Dermawan Susanto, Dominicus Christian Bagus Sutrisna, Naufal Putra Sutrisno Sutrisno Sutrisno, Sutrisno Syafruddin Agustian Putra Syarif Hidayatulloh Tahtri Nadia Utami Tibyani Tibyani Tirana Noor Fatyanosa, Tirana Noor Tri Fadilah, Ghina Utaminingrum, Fitri Vianti Mala Anggraeni Kusuma Vidya Capristyan Pamungkas Wahyu Rizki Ferdiansyah Wardana, Dzaky Ahmadin Berkah Warut, Gregorius Batara De Wibowo, Dhimas Bagus Bimasena Wijaya, Nicholas Yobel Leonardo Tampubolon Yogi Suwandy Yulian Ekananta Yunita, W. Lisa Zakiyyah, Rizka Husnun Zanna Annisa Nur Azizah Fareza