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All Journal HAYATI Journal of Biosciences Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Buletin Agrohorti Jurnal Fitopatologi Indonesia Jurnal Hortikultura Indonesia (JHI) BIOTROPIA - The Southeast Asian Journal of Tropical Biology Jurnal Agro Teknologi Tropika Indonesian Journal of Agricultural Science AGRIVITA, Journal of Agricultural Science Journal of Tropical Biodiversity and Biotechnology JURNAL BIOLOGI INDONESIA Jurnal Penelitian Pertanian Tanaman Pangan Journal of Tropical Crop Science Agritrop : Jurnal Ilmu-Ilmu Pertanian (Journal of Agricultural Science) Buletin Palma Berita Biologi Biodiversitas Journal of Biological Diversity

Sintho Wahyuning Ardie

Department Of Agronomy And Horticulture, Faculty Of Agriculture, IPB University, Dramaga Campus, Bogor 16680, Indonesia

Author-ID : 231376

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Economics, Econometrics & Finance Environmental Science Immunology & microbiology Medicine & Pharmacology Veterinary

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Pembentukan Buah dan Perkecambahan Tanaman Jarak Pagar pada Transformasi Langsung Melalui Jalur Tabung Polen Zainudin, Agus; Purwoko, Bambang Sapta; Santoso, Tri Joko; Ardie, Sintho Wahyuning; Trikoesoemaningtyas, dan
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 46 No. 1 (2018): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

The genetic transformation via pollen-tube pathway in jatropha is the first alternative method that was applied in this plant. The objective of the research was to study fruit set and germination of three genotypes of jatropha following direct transformations via pollen-tube pathways. The research was conducted during April 2014 until January 2015 at jatropa’s experimental field, Pasuruan, and at green house of ICABIOGRAD, Bogor. Three genotypes of jatropha i.e., IP3A, IP3P and JcUMM18 were used. In the first experiment, split plot design was used where 3 levels of DNA plasmid concentration as a main plot and 5 levels of stigma-drip time of DNA plasmid as a subplot. In the second experiment randomized block design was used with single factor consisting of 15 combinations of concentration and stigma-drip time of DNA plasmid as treatments and control. The results demonstrated that interaction between concentration and application time of DNA plasmid did not significantly affect fruit and seeds formation of three Jatropha genotypes. Combination of DNA plasmid concentration with time of stigma-drip had significant effect on seed germination rate of IP3A genotype, but not significant on the other variables. The concentration of 0.05-0.5 µg µL-1 and application time of DNA plasmid at 1-10 hours after pollination could be applied on jatropha genetic transformation via pollen-tube pathways.Keywords: DNA plasmid, Jatropha curcas, pCAMBIA1301, pollen-tube, stigma-drip

Efficiency of Genetic Transformation via Pollen-Tube Pathway of Jatropha (Jatropha curcas L.) Based on Histochemical and Molecular Analysis Zainudin, Agus; Purwoko, Bambang Sapta; Santoso, Tri Joko; Ardie, Sintho Wahyuning; Trikoesoemaningtyas, and
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 45 No. 3 (2017): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

The genetic transformation via pollen-tube pathway is an alternative method to overcome the constraints imposed by genotype specificity in transformation and regeneration in jatropha (Jatropha curcas L.) tissue culture. Therefore, it is necessary to establish important parameters for efficient genetic transformation of jatropha via pollen-tube pathway. The objective of the research was to study the efficiency of direct transformation of jatropha via pollen-tube pathway based on histochemical and molecular analysis. Solution of purified pCAMBIA1301 DNA plasmid carrying a hptII marker gene and a gus reporter gene with concentration level of 0.05, 0.25, 0.50 µg µl-1 were applied to stigma of flowers at 1, 2, 4, 7, 10 h after pollination. Seedling of IP3A, IP3P and JcUMM18 jatropha’s genotypes derived from 15 combination treatments of plasmid DNA concentration and application time, also wild type was subjected to histochemical and molecular analyses. Based on those analyses, the efficiency of transformation via pollen-tube pathway of three jatropha genotypes ranged from 1.5-16.7%. PCR analysis showed that a number of positive plants were identified by using specific primers hptII and gus, i.e. 1-3 and 3-7 plants of the 15 combined treatments, respectively. It indicated that the transformation efficiency via the pollen-tube pathway varied in each jatropha genotype.Keywords: Jatropha curcas L., pCAMBIA1301, plasmid DNA, stigma-drip

Toleransi Beberapa Genotipe Gandum (Triticum aestivum L.) Terhadap Kekeringan pada Stadia Perkecambahan Firdausya, Andina Fabrini; Khumaida, Nurul; Ardie, dan Sintho Wahyuning
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 44 No. 2 (2016): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

ABSTRACTDrought is a major abiotic stress impeding wheat production world wide. Selection of potentially drought tolerant genotypes are necessary for wheat improvement. The objective of this study was to test the tolerance level of nine wheat genotypes to drought stress at germination stage. Assesment at germination stage using osmoticum solution is an effective method for selecting tolerant genotypes to drougt stress in a short period of time. The experiment was arranged on a randomized complete block design with two factors and three replications. The first factor was wheat genotype consisted of Nias, Selayar, Dewata, H-20, Munal, SBD, SBR, S-03, and YMH. The second factor was concentration of PEG 6000 consisted of 0, 5, 10, 15, and 20%. Observation variables were germination percentage, shoot length, root length, number of root, number of leaf, seedling fresh weight, and seedling dry weight. Increasing level of PEG concentration inhibited the growth of wheat seedling. Based on the highes R2 value on the regression analysis, relative root length can be used as selection character. Based on RD50 value of relative root length, 15% PEG was determined concentration to select drought tolerant on wheat genotypes. Nias genotype was identified as tolerant genotype, while SBD, S-03, YMH, and Munal were identified as drought sensitive genotypes.Keywords: abiotic stress, osmotic potential, Polyethylene Glycol, RD50, relative root length

Karakterisasi Morfologi dan Sifat Kuantitatif Gandum (Triticum aestivum L.) di Dataran Menengah Widowati, Sartika; Khumaida, Nurul; Ardie, Sintho Wahyuning; Trikoesoemaningtyas, dan
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 44 No. 2 (2016): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

ABSTRACTIndonesia is one of the largest wheat importers. Suitable environmental condition for wheat needs to be studied if wheat is going to be widely cultivated in Indonesia. The adaptability of wheat grown in various climates and altitudes is one of the important aspects. The objective of this experiment was to study the quantitative and morphological character of wheat grown in middle land (540 m asl) in Bogor, West Java. The experiment was arranged in randomized complete block design with three replications. Wheat genotypes used were three national varieties (Nias, Selayar, and Dewata), four new improved varieties (Guri 3 Agritan, Guri 4 Agritan, Guri 5 Agritan, and Guri 6 Unand), and one introduced genotype (SBD). Data were collected for several quantitative variables and seventeen morphological characters based on UPOV descriptor. The result showed that wheat growth was restricted in Bogor. Genotype determined plant height, leaf number, ear length, root length, number of spikelet, harvest time, seed weight, number of tillers, and plant biomass. Based on ear length, grain weight, and plant biomass, Guri 3 Agritan had the highest production than the other genotypes.Keywords: diversity, genetic relationship, high temperature, introduced genotype, phylogenetic

In Vitro Selection of Four Soybean Genotypes using PEG for Drought Tolerance Saepudin, Adam; Khumaida, Nurul; Sopandie, Didy; Ardie, and Sintho Wahyuning
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 45 No. 1 (2017): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

The use of somatic embryo for in vitro selection program is very useful since the selected traits will be inherited in the progeny. This study was aimed to obtain somaclonal variants for drought tolerances of soybean genotypes from in vitro selection using polyethylene glycol (PEG). The experiments were set up in two factors with completely randomize design and each treatment was replicated ten times. Four soybean genotypes (Tanggamus, Anjasmoro, Yellow Biloxi, CG-22-10, and SP-10-4) were used in this study as first factor experiment. In vitro selection was in embryogenic callus level using media containing PEG (0, 5, 10, 15, and 20%) as second factor experiment was done to all genotypes. The results showed that after 3 months in the selection medium, SP-10-4 and Tanggamus genotypes showed higher percentage of fresh callus (surviving callus) and number of embryogenic callus, compared to Anjasmoro and Yellow biloxi. In contrast, CG-22-10 had the lowest number of fresh callus and number of embryogenic callus compared to other genotypes. PEG in high concentration decreased the percentage of fresh callus and number of embryogenic callus in all genotypes. Tanggamus was the only genotype that survived until cotyledonary-stage embryos after transferring in MS0 regeneration medium. Seven Tanggamus somatic embryos from PEG selection succesfully germinated and regenerated into plantlet as drought-tolerant somaclone candidates. Keywords: abiotic stress, embryogenic callus, Glycine max, somaclone

Keragaman Beberapa Aksesi Temu Hitam (Curcuma aeruginosa Roxb.) Berdasarkan Karakter Morfologi Setiadi, Adi; Khumaida, Nurul; Wahyuning Ardie, dan Sintho
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 45 No. 1 (2017): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Curcuma aeruginosa Roxb. or black turmeric belongs to the family Zingiberaceae is one of the important medicinal plant that is widely distributed in Southeast Asia, including in Indonesia. This plant has been used by the people especially as raw material for medicine and cosmetics industries. However, the development of black turmeric is still constrained by the availability of germplasm collection and improved varieties. The objective of this study was to determine the vegetative morphological characters and phylogenetic relationship among 10 accessions of black turmeric and 3 accessions of genus Curcuma in Indonesia. Data was collected for 15 morphological quantitative characters of black turmeric at the Experimental Garden at Sukamantri IPB based on UPOV and PPVFRA descriptors. The result of principal component analysis has determined three principal components with the proportion of diversity 73.94%. Cluster analysis three clusters accession of black turmeric, namely cluster 1 consisted of accession Cianjur, Malang, Rimbo, and Kendal; cluster 2 consisted of accession Bogor, turmeric (Curcuma longa L.), java turmeric (Curcuma xanthorrhiza Roxb.), Liwa, Natar, white turmeric (Curcuma zedoaria Roscoe.); cluster 3 consisted of accession Cirebon, Kuningan 1, and Kuningan 2. Keywords: cluster, component analysis, germplasm, medicinal plant, phylogenetic

Peranan Fosfor dalam Meningkatkan Toleransi Tanaman Sorgum terhadap Cekaman Aluminium Lestari, Tri; ,, Trikoesoemaningtyas; Ardie, Sintho Wahyuning; Sopandie, dan Didy
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 45 No. 1 (2017): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

The management of P nutrition can be a good solution for aluminum toxicity and P nutrient deficiency in acid soil. This study aimed to determine the role of phosphorus in improving the tolerance of sorghum to Al stress in nutrient culture. This research was conducted at green house of IPB Bogor, tissue culture laboratory in the Department of AGH IPB and Balai Besar Pasca Panen Cimanggu Bogor, from January to November 2014. A completely randomized factorial design was used in three experiments. The results revealed that addition of P improved the tolerance of two sorghum genotypes to Al stress as indicated by the reduction in root length inhibition by Al, where P was more effective in tolerant genotype Numbu. Addition of P reduced the accumulation of Al in the root tissues as shown by the lighter intensity of hematoxylin staining, especially in Numbu. Aluminum stress increased the secretion of oxalate acid in both sorghum genotypes, where P lowered oxalate acid secretion in both genotypes. These facts showed that the role of P in improving the tolerance of sorghum to Al stress might be associated with the inhibition of Al absorption into the root tissues, although the mechanism is not yet known.Keywords: Al stress, organic acid secretion, role of P, root staining method, sorghum

Evaluasi Hasil dan Kandungan Pati Mutan Ubi Kayu Hasil Iradiasi Sinar Gamma Generasi M1V4 Subekti, Isnani; Khumaida, Nurul; Ardie, Sintho Wahyuning; Syukur, dan Muhamad
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 46 No. 1 (2018): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Cassava is one of the important starch producer crops. Although Indonesia ranks as the third largest cassava producer country, Indonesia still imports cassava starch to meet the domestic demand in food and non-food industries. Gamma ray irradiation has been implemented to generate cassava mutants in order to support development of superior cassava variety, especially high yield and high starch content, especially high yield and high starch content. The objectives of this research were to evaluate the yield potential and the starch content of gamma irradiated 40 putative cassava mutants at M1V4 generation. This research was arranged in randomized complete block design with three replications and conducted at Cikabayan Experimental Field, IPB, Bogor, from May 2016 to March 2017. The starch content was measured using gravimetric methods. The results showed that five mutants, G2142, G3151, G2141, G1143, and G3111, had higher tuber weight per plant (6-7 kg per plant) compared to the background ‘Gajah’ genotype (4.7 kg per plant). ‘G2112’ mutant genotype showed higher starch content (23.86%) compared to the background ‘Gajah’ genotype (17.65%). The specific gravity (SG) was positively correlated with starch content (r = 0.905), indicated that the higher the SG, the higher the starch content of cassava.Keywords: gravimetric, mutant, specific gravity (SG), yield

Heritabilitas, Karakterisasi, dan Analisis Clustergram Galur-galur Padi Dihaploid Hasil Kultur Antera Anshori, Muhammad Fuad; Purwoko, Bambang Sapta; Dewi, Iswari Saraswati; Ardie, Sintho Wahyuning; Suwarno, Willy Bayuardi; Safitri, dan Heni
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 46 No. 2 (2018): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Doubled haploid rice formation through anther culture becomes one of the alternatives in the plant breeding. The lines need to be characterized, clustered, and selected. This study aimed at determining heritability, characters, and cluster of doubled haploid lines obtained from anther culture. This experiment was conducted at IPB Rice Field Experiment Station, Darmaga, Bogor from October 2016 until January 2017. The experiment was managed according to randomized complete block design (RCBD) with 3 replications and genotype as the single factor treatment. Genotypes used were 60 genotypes consisting of 56 doubled haploid lines and 4 control varieties. The controls were Ciherang, Inpara 5, Inpari 29, and Inpari 34 Salin Agritan. The results showed that all characters have significant effect and high heritability (above 60%), so they could be used as a selection character. The tested genotypes could be grouped into three main groups. The first group consisted of 11 genotypes, the second group consisted of 44 genotypes, and the third group consisted of 5 genotypes. The main group determinant characters were productive tillers, percentage of filled grain number, plant height, panicle length, and weight of 1,000 grains. The number of filled grain and productive tillers can be used as selection characters together with yield potential.

Pertumbuhan dan Perkembangan Ubi Kayu Genotipe Lokal Manggu pada Panjang Setek Batang yang Berbeda Nurul Khumaida; Siswati, Leni; Ardie, Sintho Wahyuning
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 47 No. 3 (2019): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Cassava plant is widely cultivated by Indonesian people. Research on the development of roots and tubers of cassava is still limited. The purpose of this study was to evaluate the effect of stem cut size on the root development system and tuber filling in the cassava local genotype “Manggu”. This study consisted of two experiments namely experiments in polybag and in the field. The study was conducted in the IPB experimental field at Cikabayan in December 2017-July 2018. The experiment used a randomized completely block design (RCBD) with two treatments and three replications, namely cuttings of 15 cm and 30 cm. Observation of basal roots, number of nodal roots, length of basal roots, length of nodal roots, number of tubers, number of leaves, plant diameter, and plant height were carried out destructively every week. The results showed that the root bulking process occurred in the nodal root and basal roots and it was observed since 5 WAP. The results showed a positive correlation between the total number of tubers and the number of tubers formed from nodal and basal roots, the number of basal roots, and the length of basal roots and it was negatively correlated with the number of leaves. The number of tubers from nodal roots is positively correlated with the number of basal root tubers while it is negatively correlated with the length of the nodal root. The development of roots into cassava tubers occurred since 5 WAP. Cutting size treatments significantly did not affect root development. Keywords: basal root, nodal root, stem cutting, stem length

Co-Authors Abdul Qadir ADI SETIADI Agus Zainudin Agustina, Ferra Anggita Ahmad Fathoni Aji, Titistyas Gusti Alex Hartana Anas D Susila Anas Dinurrohman Susila Anggraeni, Ratih Prajnaparamita Anjarsari, Nurul Aeni Anshori, Muhammad Fuad Ashan, Muh Aswad Azis Natawijaya Bambang Sapta Purwoko Budi Rahardjo Butarbutar, Lidya Kristina Sari Cahyono, Andy Agus Chusnah, Uswatun Dewi Sukma Dhika Prita Hapsari Diaguna, Ridwan Didy Sopandie Dwi Guntoro DWINITA W UTAMI Enny Sudarmonowati Enung Sri Mulyaningsih fatimah Fatimah Ferdinans, Ferdinans Firdausya, Andina Fabrini Ghulammahdi, Munif Hagia Sophia Khairani HAJRIAL ASWIDINNOOR Hariyadi Hartana, Alex Heni Safitri Heni Safitri Hermanasari, Rini IDA ROSDIANTI Ika Roostika Indrastuti A. Rumanti Irmanida Batubara Ismail maskromo Ismiyanti Ismiyanti Iswari Saraswati Dewi Iswari Saraswati Dewi Junia Anindya Purwandani, Junia Anindya Kansa Dianti Putri Karjunita, Nike Krisantini Lainufar, Putri Aulia Lefin Kafindra Luthfiani, Marisa Vidya M Reza Pahlevi M. Syukur Mahrup Mahrup, Mahrup Mashuri Waite maskromo, Ismail Miyamoto, Takuji Mohamad Rahmad Suhartanto Muaz Adbdul Karim Muaz Adbdul Karim Muhamad Syukur Munif Ghulamahdi MUNIF GHULAMMAHDI Mursyalatiyus, isnainy dinul N. Sri Hartati, N. Sri N. Sri i Hartati Nampiah Sukarno Natawijaya, Azis Novianti, Shilfa Nugraha, Yudhistira Nugroho, Candra Catur Nugroho, Rizki Bagus NURHAYATI NURHAYATI NURUL KHUMAIDA NURUL KHUMAIDA Nurul Khumaida Nurul Khumaida Nurul Khumaida Nurulalia, Lia Pahlevi, M Reza Parlindo, Fitra Pasaribu, Pesta Maria Hotnauli Pratama, Syilvia Nosya Prita Sari Dewi Putri, Prabawati Hyunita Rahmawati, Rika Sri Rahmi Henda Yani Ramadaniarto Rizqullah Reflinur Resti Putri Septyani Resti Putri Septyani Rika Miftakhul Jannah Rizki Bagus Nugroho Rizqullah, Ramadaniarto Romy Agus Saputro Romy Agus Saputro Rubiyo Rubiyo Rumanti, Indrastuti A. Sadewi Maharani, Sadewi Saenal, Nirwanti Saepudin, Adam Safitri, dan Heni Safitri, Vika Ayu Satya Nugroho Satya Nugroho Sholiha, Nabila Fairuz Siswati, Leni Siti Kurniawati Slamet Susanto Soekisman Tjitrosoedirdjo SRI RAHAYU Sri Ratnawati Subekti, Isnani Sudarsono Sudarsono Sudarsono Sudarsono Sudarsono Sudarsono Sudarsono SUDARSONO Sudarsono, Sudarsono Susilawati Susilawati Suwarno ,, Suwarno SUWARNO SUWARNO Suwarno Suwarno Suwarno, Suwarno Suwarno, Suwarno Syawaluddin, Dwi Dana Sylvia Nosya Pratama Syukur, M. Tri Joko Santoso TRI JOKO SANTOSO TRI KOESOEMANINGTYAS Tri Lestari Trias Sitaresmi Trikoesoemaningtyas Tsugama, Daisuke Ulfa, Umi Tahniah Umezawa, Toshiaki Vincentia Esti Windiastri, Vincentia Esti Wahyudi Wahyudi Widowati, Sartika Willy Bayuardi Suwarno Wospakrik, Andrean Heskiel YUDHISTIRA NUGRAHA Yudhistira Nugraha Yudiansyah Yudiansyah Yudiansyah Yudiansyah Yudiwanti Wahyu E. Kusumo Yuli Irvana Dewi Yuli Sulistyowati Yullianida , Za’aziza Ridha Julia

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