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All Journal HAYATI Journal of Biosciences Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) BIOTROPIA - The Southeast Asian Journal of Tropical Biology Jurnal Kelautan : Indonesian Journal of Marine Science and Technology Jurnal Sumberdaya Hayati Journal of Tropical Biodiversity and Biotechnology TREUBIA BERITA BIOLOGI JURNAL BIOLOGI INDONESIA ZOO INDONESIA saintis LIMNOTEK - Perairan Darat Tropis di Indonesia Majalah Ilmiah Biologi BIOSFERA: A Scientific Journal Saintifik : Jurnal Matematika, Sains, dan Pembelajarannya Jurnal Entomologi Indonesia Zoo Indonesia Journal of Fisheries & Marine
Tri Atmowidi
Departemen Biologi, Fakultas Matematika Dan Ilmu Pengetahuan Alam, IPB University, Kampus Dramaga, Bogor 16680
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Earth & Planetary Sciences Economics, Econometrics & Finance Education Environmental Science Immunology & microbiology Mathematics Physics Veterinary Other

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Keanekaragaman dan Distribusi Gastropoda Air Tawar di Sungai Ciapus, Jawa Barat, Indonesia: Diversity and Distribution of Freshwater Gastropods in Ciapus River, West Java, Indonesia Ayub Wirabuana Putra; Muhammad Al Anshari; Nurul Magfirah Sukri; Tri Heru Widarto; Tri Atmowidi; Magdalena Litaay; Windra Priawandiputra
Jurnal Sumberdaya Hayati Vol. 9 No. 4 (2023): 2023
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.9.4.145-151

Abstract

Despite being part of food web and bioindicator in freshwater ecosystems, gastropods are globally jeopardized. Therefore, the occurence of freshwater gastropods need to be assessed. This research aimed to examine diversity and distribution of freshwater gastropods along the Ciapus River in Bogor, West Java, Indonesia. The research was conducted from February to May 2020. Sampling was carried out within limited 15 minutes time period using five 1 × 1 m plots established at each of four survey stations. Gastropods were collected from the bottom of river, rock surface and riverbanks within 15-100 cm of water depth. Environmental parameters were recorded. Data was analyzed using biodiversity index parameters and diversity t-test. The survey collected a total 587 individuals from 7 species of freshwater gastropods. The abundance, species richness and diversity of gastropods in the Ciapus river were different between upstream and downstream, location with high altitude tend to have low number of species. Glyptophysa stagnalis became the only species recorded from upstream area. Meanwhile, there were 4 species, which were collected in other three stations and 2 species that recorded from two stations. In three stations, Tarebia granifera was the most dominant species.
Variasi Bentuk dan Warna Sisik Sayap Kupu-Kupu dan Ngengat: Variations in Shape and Color of Butterfly Wing Scales and Moths Marchika Rimadhanti Irmanda Rani; Tri Atmowidi; Tri Heru Widarto
Jurnal Sumberdaya Hayati Vol. 9 No. 4 (2023): 2023
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.9.4.164-170

Abstract

Butterflies and moths are members of Lepidoptera with the main characteristic of having two pairs of membranous wings covered with scales. The wings of butterflies and moths have colored patterns that can be used as protection from predators. The aim of this study was to compare the shape, size, and color variations of the scales on the wings of butterflies and moths. Samples of butterflies and moths were collected from the Dramaga Bogor Agricultural University campus. In this study, 11 species of butterflies were used belonging to three families, namely Pieridae, Nymphalidae, and Papilionidae, and 9 species of moths in four families, namely Erebidae, Geometridae, Hesperiidae, and Uraniidae. Observation of scales was carried out with a compound microscope connected to a camera, and measured using imageJ. The shape of the wing scales of butterflies and moths was elongated and widened with the base of the scales and the number of teeth on the distal part varied. The shape of the serrations on the butterfly scales tends to be rounded, while on the moth it is tapered. Larger scale sizes are found on light-colored butterfly scales and dark-colored moth scales.
Tipe peneluran, pengaruh lama ketiadaan inang dan pakan terhadap keragaan reproduksi parasitoid Anagrus nilaparvatae Pang et Wang (Hymenoptera: Mymaridae) Abdilah, Nurullah Asep; Atmowidi, Tri; Buchori, Damayanti
Jurnal Entomologi Indonesia Vol 13 No 3 (2016): November
Publisher : Perhimpunan Entomologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5994/jei.13.3.127

Abstract

Anagrus nilaparvatae Pang et Wang (Hymenoptera: Mymaridae) is a major egg parasitoid of brown planthopper, Nilaparvata lugens Stal (Hemiptera: Delphacidae). The purpose of this study was to examine the egg development type, the effect of host deprivation and feeding on the reproductive performance of parasitoid. Determination of the egg development type was done by dissecting females of A. nilaparvatae upon emerging. Adult females aged 0, 1, 2, 3, 4, 5, and 6 hours were killed in the freezer. Abdominal of wasp was dissected by micro pin. Mature egg of wasp were calculated and documented. Treatment of host deprivations were conducted by feeding 10% honey solution and depriving female parasitoids of host for 3, 6, 9, 12, and 18 hours consecutively. After treatments, female parasitoids were given hosts every day until the parasitoids died. Another group of parasitoids were given with water and treated with the same lenght of deprivation period. Results showed that the A. nilaparvatae egg development type is proovigenic. The egg maturation of parasitoid has been initiated since it first emerge with 75% mature eggs of potential fecundity. In the conditions provided 10% honey solution or water as feed, reproductive performance of A. nilaparvatae decreased with increasing duration of host deprivation period, include realized fecundity, parasitization rate, and longevity of female wasp. The decline in the reproductive performance was done by host deprivation for 9 to 18 hours. Longevity of female wasps varied from one to three days, with higher and lower values consecutively for 9 and 18 hours of host deprivation period.
Neraca kehidupan dan parameter demografi Henosepilachna vigintioctopunctata Fabricius (Coleoptera: Coccinellidae) pada empat tanaman inang berbeda Waskito, Adi; Atmowidi, Tri; Kahono, Sih
Jurnal Entomologi Indonesia Vol 15 No 3 (2018): November
Publisher : Perhimpunan Entomologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5994/jei.15.3.115

Abstract

Ladybird beetle, Henosepilachna vigintioctopunctata Fabricius (Coleoptera: Cocinellidae) has a wide host plants belonging to family of Solanaceae. The species can be a serious pests of solanaceous crops, such as, eggplants and potatoes. The aims of the research were to study life table and to measure demography parameters of H. vigintioctopunctata fed by leaves of Solanum torvum, S. nigrum, S. melongena, and Brugmansia suaveolens. Results showed that the highest longevity (68.7 days, male and 79 days, female) occurred in H. vigintioctopunctata fed by leaves of  S. nigrum, followed by S. torvum (20.6 days, male and 31.7 days, female), S. melongena (1.5 days, male and 2.5,0 days, female, and B. suaveolens (1.8 days, male and 1.7 days, female). Based on demography parameters, the highest net reproductive rate occured in H. vigintioctopunctata fed on leaves of S. torvum (R0 = 2.11 individu), followed by S. nigrum (R0 = 0.64 females/female), S. melongena (R0 = 0.06 females/female), and B. suaveolens (R0 = 0.006 females/female). Generation time was high in H. vigintioctopunctata fed by S. nigrum (28.53 days) and S. torvum (27.42 days) compared to S. melongena (5,9 days) and B. suaveolens (2.5 days). Intrinsic growth rate of H. vigintioctopunctata was highest in S. torvum (r = 0.0094 females/female/day). Based on the life table and demography parameters, S. torvum is the most suitable plant for growth and development of H. vigintioctopunctata.
The characterization of Apis cerana and Apis mellifera mrjp2 gene in Indonesia and the phylogeny relationship with mrjp family genes: Karakterisasi gen mrjp2 Apis cerana dan Apis mellifera di Indonesia dan hubungan filogeni dengan gen mrjp famili Shullia, Nurul Insani; Febiriani, Tia Vina; Raffiudin, Rika; Widjaja, Candra; Atmowidi, Tri
Jurnal Entomologi Indonesia Vol 21 No 1 (2024): March
Publisher : Perhimpunan Entomologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5994/jei.21.1.1

Abstract

The major royal jelly protein 2 (mrjp2) gene is one of the molecular markers that can discriminate between Apis cerana Fabricius and A. mellifera Linnaeus. Due to the lack of mrjp2 gene sequences registered in GenBank for Indonesian A. cerana and A. mellifera, DNA characterization and bioinformatics analysis were needed. This research aimed to characterize the exon-intron organization of mrjp2 genes for both Indonesian bee species and analyze the phylogenetic relationship with other mrjp family genes. DNA samples of Apis cerana and A. mellifera, collected from Bogor, were amplified using MF-MR primer at annealing temperatures of 47 oC and 50 oC, respectively. The length of A. cerana and A. mellifera DNA sequences were 579 and 597 bp, respectively. The DNA sequences of both species were comprised of partial exons 1, introns 1, exons 2, introns 2, and partial exon 3. The number of putative amino acids of A. cerana and A. mellifera mrjp2 genes were 111 and 123, respectively. We confirmed that the partial MRJP2 putative amino acids of both honey bees belong to the MRJP family and contained the peptide signal in the 14 first amino acid sites. Nucleotide variation of the mrjp2 gene in A. cerana was higher than A. mellifera. Phylogenetic tree construction showed that A. cerana and A. mellifera form a monophyletic clade with the A. mellifera mrjp7 gene and another mrjp family gene clustered as reported in a previous study.
The Diversity of Scarabaeid Beetles (Scarabaeidae: Coleoptera) in The Lowland Rainforest Ecosystem of Sorong Nature Tourism Park, West Papua, Indonesia Fitradiansyah, La Ode; Atmowidi, Tri; Priawandiputra, Windra; Kahono, Sih
Journal of Tropical Biodiversity and Biotechnology Vol 8, No 3 (2023): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.78230

Abstract

Scarabaeid beetles have an essential role in forest ecosystems, such as nutrient recycling, seed dispersal, forest regeneration, controlling parasite, and reducing carbon emissions. Until now, there has been no publication on scarabaeid beetle diversity in the lowland rainforest ecosystem of Papua, Indonesia. This study aims to measure the diversity of scarabaeid beetles in the lowland rainforest ecosystem of Sorong Nature Tourisme Park (SNTP), West Papua, Indonesia. Determination of study sites used in this study was using the purposive sampling method in three habitat types i.e., rehabilitation zone, conservation zone, and protection zone using baited dung traps (type A, B, and C dung traps), light trap, and active sampling. The fresh cow and human feces baits were used for dung traps that was replaced every 24 hours (68 repetitions for 68 days) in each habitat. Results showed a total of 30 individuals belonging to 13 species of scarabaeid beetles were collected. Onthophagus has the highest species richness (5 species) and the low species richness were Aphodius sp., Anomala sp., and Adoretus sp. (1 species). The protection zone has the highest diversity index (H’=2.09), followed by the conservation zone (H’=2), and rehabilitation zone (H’=0.5). Based on trap type, dung trap collected the most beetle species (9 species), followed by light trap (6 species), and active sampling (2 species). Based on Pearson correlation, soil pH significantly correlated with beetle abundance. This study was the first report of scarabaeid beetles in the West Papua, Indonesia.
Apis cerana Fabricius, 1793 in Sumatra: Haplotype Variations of Mitochondrial DNA and the Molecular Relationship with the Asian Honey Bees (Hymenoptera: Apidae) Simanjuntak, Juniarto Gautama; Priawandiputra, Windra; Raffiudin, Rika; Shullia, Nurul Insani; Jauharlina, Jauharlina; Pradana, Mahardika Gama; Meilin, Araz; Jasmi, Jasmi; Pujiastuti, Yulia; Lestari, Puji; Ilyasov, Rustem; Sitompul, Rahmadi; Atmowidi, Tri
HAYATI Journal of Biosciences Vol. 31 No. 4 (2024): July 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.4.768-780

Abstract

Honey bee Apis cerana is widely distributed in Asia and the Indonesian archipelago, including Sumatra. We studied the molecular variations of A. cerana using cytochrome c oxidase subunits 1 and 2 genes (cox1 and cox2) and the cox1/cox2 intergenic spacers (igs) in several altitudes in the six provinces of Sumatra. We explored the haplotype distributions of those three mtDNA markers for A. cerana in the low-, mid-, and highlands of Sumatra. We also analyzed their relationship with A. cerana in Sundaland and Asia using those markers. Our study revealed 12 new haplotypes of A. cerana cox1 in Sumatra, while nine and eight new haplotypes for cox2 and igs, respectively. Apis cerana in North Sumatra, Lampung, and South Sumatra had the three highest haplotype variations. Most of the specific haplotypes of inter-colony A. cerana from Sumatra were found in the lowlands, while most were in the highlands for intra-colony variations. We found low gene flow among populations of A. cerana in Sumatra. One haplotype, Sumatra4 cox2 from North Sumatra, was the same as Java3 haplotype, presumably due to anthropogenic impact. The molecular phylogenetic tree of A. cerana in the Sundaland revealed that A. cerana from Sumatra has a close relationship to those of Borneo compared to Java.
Species Richness and Nesting Sites of Stingless Bees in the Forest and Settlement Areas in Banten Province, Indonesia and their Morphometry Atmowidi, Tri; Oktaviani, Widia Bela; Karimah, Khadijah Nurul; Prawasti, Taruni Sri; Dorly; Priawandiputra, Windra
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1095-1105

Abstract

Stingless bees (Apidae: Meliponinae) are distributed in the tropics, and there are more than 600 species worldwide, Forty-six species were recorded in Indonesia. Nest of the species is generally found in tree holes, rocks, house walls, house wooden, bamboo cavities, and soil. Current research explores the species richness, nesting sites and morphometry of stingless bee species in the forest and settlement areas in Banten province, Indonesia. Road- and purposive sampling methods were used to explore the stingless bee species. Thirty-five body characters of each stingless bee species were measured. Results showed four stingless bee species found were Tetragonula laeviceps, Heterotrigona itama, Lepidotrogona terminata, and Tetragonula sp. The dominant species found was L. terminata in the forest, while T. laeviceps in the settlement areas. The nesting sites of stingless bees in the forests were found in the tree cavities of various plant species with tree diameter range 39.3-87.3 cm. In contrast, the nest of T. laeviceps was found in the tree of Swietenia mahagoni, Lansium parasiticum, and bamboo cavities of houses in the settlement areas. The nest entrances of stingless bees varied, i.e., oval-rounded, tubular with varied diameters, and blackish-brown in color. The internal structure of the nest consists of brood cells, pollen cells, and honey cells. Heterotrigona itama has the largest body size (5.52 mm in length), followed by L. terminata (4.99 mm in length) and T. laeviceps (3.86 mm in length). Thirty-three characters of H. itama were larger than L. terminata and T. laeviceps, except for gena width and malar length.
Diversitas Serangga Penyerbuk dan Pembentukkan Buah Tanaman Kakao (Theobroma cacao L.): Diversity of Pollinator Insects and Fruit Set of Cacao ( Theobroma cacao L.) Nugroho, Ari; Atmowidi, Tri; Kahono, Sih
Jurnal Sumberdaya Hayati Vol. 5 No. 1 (2019)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.5.1.11-17

Abstract

Cocoa (Theobroma cacao L.) is an entomophilous plant which is need insects for pollination. Pollinator insects increase cocoa’s fruit set. The aim of this research were to study diversity of pollinator insects, visiting activity of fly, Forcipomyia (Diptera), and fruit set of cocoa. Observation of pollinator insects was conducted by scan sampling method. Visiting activity of Forcipomyia were observed based on duration visit per flower, number of flowers visited per minute, and duration of activity on flowers. Pollen load on body of Forcipomyia were measured. Pollination effectiveness of insect were measured from the number and size of the cocoa fruit. Result showed that 19 species of insects visitors on cocoa flowers were observed. Nine species are pollinator of cocoa’s plants i.e. Forcipomyia, Cecidomyia, Stilobezzia, Drosophila, Orimarga, Dolichoderus, Pheidole, Megachile, and Nomia. Cocoa pollination by insects produced 3% fruit higher than flowers without insect pollination. Pollination by insects produced size and weight of fruit, and number of seed per fruit were higher than pollination without insects.
Additional nest structures and natural enemies of stingless bees (Hymenoptera: Apidae: Meliponinae) PANGESTIKA, NORITA WIDYA; ATMOWIDI, TRI; KAHONO, SIH
Jurnal Sumberdaya Hayati Vol. 4 No. 2 (2018)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.4.2.42-47

Abstract

Stingless bees (Hymenoptera: Apidae) are widely distributed in tropics and subtropics areas. Now these bees are farmed by the human because they produce honey and propolis. Natural enemies can disturb the colony that affects to nest structure and productivity of these bees. This study aimed to study the common nest structure and additional nest structure of stingless bees which caused by natural enemies. This research was conducted from August to November 2015. Samples were taken from three locations, i.e, Pasuruan (East Java), Tasikmalaya (West Java), and Rangkasbitung (Banten). Descriptive analysis was used to compare the structure and composition of the nest in bamboo and additional nest structures in relation with natural enemies. Generally, the structure and composition of the nest of stingless bees in bamboo consist of nest entrance, storage pots (honey and pollen), and brood cells. We didn’t found natural enemies of stingless bees in Pasuruan and Tasikmalaya and these colonies did not create additional nest structures. In contrast, the colonies in Rangkasbitung created additional nest structures i.e. the inner entrance covered by batumen and cerumen and also build a root-like structure. Natural enemies found in the colony at Rangkasbitung were cockroaches (Blattodea: Blattidae), histerid beetles, Platysoma leconti (Coleoptera: Histeridae), nitidulid beetles, Carphophilus sp. (Coleoptera: Nitidulidae), and ants, Pheidole sp. (Hymenoptera: Formicidae).
Co-Authors Abdilah, Nurullah Asep Adi Waskito Afriansyah Afriansyah ANDENG SUTRISNA Andi Gita Maulidyah Indraswari Suhri Anggreny Pramitha Wulandari Anggun Wicaksono Anisa, Henta Ria Annisa Sendekia Lubis Araz Meilin Ari Nugroho Ariani, Nunik Sri Arif Maulana Arif Rohmatullah, Arif Asmini Asmini Ayub Wirabuana Putra Bahar, Irnayanti Bambang Suryobroto Berry Juliandi Budi Setiawan Candra Widjaja DAMAYANTI BUCHORI dan Sih Kahono Dewi, Aisyah Nurlatifah Dimas Adjie Prasetyo Djunijanti Peggie Djunijanti Peggie Djunijanti Peggie, Djunijanti Dorly Dorly Dorly Dyah Perwitasari Elida Hefni Siregar Erawati, Nety Virgo Fahri Fahri Febiriani, Tia Vina Fitradiansyah, La Ode Fitriya, Jazirotul Fitriya, Jazirotul Hanna Latifa Hasan, Phika Ainnadya Hepburn, Randall Hepburn, Randall Ilyasov, Rustem Imai, Hiroo Irnayanti Bahar Jasmi Jasmi Jasmi Jasmi Jauharlina Jauharlina Jauharlina Jauharlina Kanthi A. Widayati KANTHI ARUM WIDAYATI Karimah, Khadijah Nurul Kurniawan, Yana Magdalena Litaay Magdalena Litaay Mahardika Gama Pradana Maker, Ursula Paulawati Marchika Rimadhanti Irmanda Rani Miharja, Jajang Mosi Retnani Fajarwati Muhammad Al Anshari Muhammad Fahmi Manarudin Muhammad Kadri, Muhammad Mujiono, Nova Nawangsari Sugiri NETY VIRGO ERAWATI Nisa, Weni Khoiru Nisfia Rakhmatun Nisa Nofialdi Nofialdi Noorchaliza, Fauzia Nova Mujiono NOVA MUJIONO Novidayanti, Aldea Anisyafera Nurul Insani Shullia Nurul Magfirah Sukri Nurullah Asep Abdilah Oktaviani, Widia Bela PANGESTIKA, NORITA WIDYA Pradana, Mahardika Gama Pradina Purwati Puji Lestari PUJI LESTARI Puji Rianti PUJI RIYANTI Pujiastuti PURNAMA HIDAYAT Putera, Alexander KS Ratih Rusman Rendy Setiawan Ria Anisa, Henta RIKA RAFFIUDIN Sabella, Yurika Nur Sefriatin Nurmaulani Septiani Dewi Ariska Siffahk, Lutmitha Nisaul Sih Kahono Sih Kahono Sih Kahono Sih Kahono Sih Kahono Sih Kahono Sih Kahono Simanjuntak, Juniarto Gautama Sitompul, Rahmadi SJAFRIDA MANUWOTO Soesilowati Hadisoesilo, Soesilowati Sugeng Utomo Sugeng Utomo Sulistijorini Syahras Fathin Aminuddin, Syahras Fathin TARUNI SRI PRAWASTI Taruni Sri Prawasti Taruni Sri Prawasti TARUNI SRI PRAWASTI Tia Vina Febiriani Tri Heru Widarto Wachju Subchan Waskito, Adi Wicaksono, Anggun Widjaja, Candra Windra Priawandiputra WINDRA PRIAWANDIPUTRA, WINDRA Winnie, Ruth Martha Woro Anggraitoningsih Noerdjito Woro Anggraitoningsih Noerdjito Woro Noerdjito Yana Kurniawan Yodhy, Lintang Yulia Pujiastuti YULIA PUJIASTUTI