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All Journal HAYATI Journal of Biosciences Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) BIOTROPIA - The Southeast Asian Journal of Tropical Biology Jurnal Kelautan : Indonesian Journal of Marine Science and Technology Jurnal Sumberdaya Hayati Journal of Tropical Biodiversity and Biotechnology TREUBIA BERITA BIOLOGI JURNAL BIOLOGI INDONESIA ZOO INDONESIA saintis Jurnal Biodjati LIMNOTEK - Perairan Darat Tropis di Indonesia Majalah Ilmiah Biologi BIOSFERA: A Scientific Journal Saintifik : Jurnal Matematika, Sains, dan Pembelajarannya Jurnal Entomologi Indonesia Zoo Indonesia Journal of Fisheries & Marine Berita Biologi
Tri Atmowidi
Departemen Biologi, Fakultas Matematika Dan Ilmu Pengetahuan Alam, IPB University, Kampus Dramaga, Bogor 16680
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Earth & Planetary Sciences Economics, Econometrics & Finance Education Environmental Science Immunology & microbiology Mathematics Physics Veterinary Other

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The characterization of Apis cerana and Apis mellifera mrjp2 gene in Indonesia and the phylogeny relationship with mrjp family genes: Karakterisasi gen mrjp2 Apis cerana dan Apis mellifera di Indonesia dan hubungan filogeni dengan gen mrjp famili Shullia, Nurul Insani; Febiriani, Tia Vina; Raffiudin, Rika; Widjaja, Candra; Atmowidi, Tri
Jurnal Entomologi Indonesia Vol 21 No 1 (2024): March
Publisher : Perhimpunan Entomologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5994/jei.21.1.1

Abstract

The major royal jelly protein 2 (mrjp2) gene is one of the molecular markers that can discriminate between Apis cerana Fabricius and A. mellifera Linnaeus. Due to the lack of mrjp2 gene sequences registered in GenBank for Indonesian A. cerana and A. mellifera, DNA characterization and bioinformatics analysis were needed. This research aimed to characterize the exon-intron organization of mrjp2 genes for both Indonesian bee species and analyze the phylogenetic relationship with other mrjp family genes. DNA samples of Apis cerana and A. mellifera, collected from Bogor, were amplified using MF-MR primer at annealing temperatures of 47 oC and 50 oC, respectively. The length of A. cerana and A. mellifera DNA sequences were 579 and 597 bp, respectively. The DNA sequences of both species were comprised of partial exons 1, introns 1, exons 2, introns 2, and partial exon 3. The number of putative amino acids of A. cerana and A. mellifera mrjp2 genes were 111 and 123, respectively. We confirmed that the partial MRJP2 putative amino acids of both honey bees belong to the MRJP family and contained the peptide signal in the 14 first amino acid sites. Nucleotide variation of the mrjp2 gene in A. cerana was higher than A. mellifera. Phylogenetic tree construction showed that A. cerana and A. mellifera form a monophyletic clade with the A. mellifera mrjp7 gene and another mrjp family gene clustered as reported in a previous study.
The Diversity of Scarabaeid Beetles (Scarabaeidae: Coleoptera) in The Lowland Rainforest Ecosystem of Sorong Nature Tourism Park, West Papua, Indonesia Fitradiansyah, La Ode; Atmowidi, Tri; Priawandiputra, Windra; Kahono, Sih
Journal of Tropical Biodiversity and Biotechnology Vol 8, No 3 (2023): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.78230

Abstract

Scarabaeid beetles have an essential role in forest ecosystems, such as nutrient recycling, seed dispersal, forest regeneration, controlling parasite, and reducing carbon emissions. Until now, there has been no publication on scarabaeid beetle diversity in the lowland rainforest ecosystem of Papua, Indonesia. This study aims to measure the diversity of scarabaeid beetles in the lowland rainforest ecosystem of Sorong Nature Tourisme Park (SNTP), West Papua, Indonesia. Determination of study sites used in this study was using the purposive sampling method in three habitat types i.e., rehabilitation zone, conservation zone, and protection zone using baited dung traps (type A, B, and C dung traps), light trap, and active sampling. The fresh cow and human feces baits were used for dung traps that was replaced every 24 hours (68 repetitions for 68 days) in each habitat. Results showed a total of 30 individuals belonging to 13 species of scarabaeid beetles were collected. Onthophagus has the highest species richness (5 species) and the low species richness were Aphodius sp., Anomala sp., and Adoretus sp. (1 species). The protection zone has the highest diversity index (H’=2.09), followed by the conservation zone (H’=2), and rehabilitation zone (H’=0.5). Based on trap type, dung trap collected the most beetle species (9 species), followed by light trap (6 species), and active sampling (2 species). Based on Pearson correlation, soil pH significantly correlated with beetle abundance. This study was the first report of scarabaeid beetles in the West Papua, Indonesia.
Apis cerana Fabricius, 1793 in Sumatra: Haplotype Variations of Mitochondrial DNA and the Molecular Relationship with the Asian Honey Bees (Hymenoptera: Apidae) Simanjuntak, Juniarto Gautama; Priawandiputra, Windra; Raffiudin, Rika; Shullia, Nurul Insani; Jauharlina, Jauharlina; Pradana, Mahardika Gama; Meilin, Araz; Jasmi, Jasmi; Pujiastuti, Yulia; Lestari, Puji; Ilyasov, Rustem; Sitompul, Rahmadi; Atmowidi, Tri
HAYATI Journal of Biosciences Vol. 31 No. 4 (2024): July 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.4.768-780

Abstract

Honey bee Apis cerana is widely distributed in Asia and the Indonesian archipelago, including Sumatra. We studied the molecular variations of A. cerana using cytochrome c oxidase subunits 1 and 2 genes (cox1 and cox2) and the cox1/cox2 intergenic spacers (igs) in several altitudes in the six provinces of Sumatra. We explored the haplotype distributions of those three mtDNA markers for A. cerana in the low-, mid-, and highlands of Sumatra. We also analyzed their relationship with A. cerana in Sundaland and Asia using those markers. Our study revealed 12 new haplotypes of A. cerana cox1 in Sumatra, while nine and eight new haplotypes for cox2 and igs, respectively. Apis cerana in North Sumatra, Lampung, and South Sumatra had the three highest haplotype variations. Most of the specific haplotypes of inter-colony A. cerana from Sumatra were found in the lowlands, while most were in the highlands for intra-colony variations. We found low gene flow among populations of A. cerana in Sumatra. One haplotype, Sumatra4 cox2 from North Sumatra, was the same as Java3 haplotype, presumably due to anthropogenic impact. The molecular phylogenetic tree of A. cerana in the Sundaland revealed that A. cerana from Sumatra has a close relationship to those of Borneo compared to Java.
Species Richness and Nesting Sites of Stingless Bees in the Forest and Settlement Areas in Banten Province, Indonesia and their Morphometry Atmowidi, Tri; Oktaviani, Widia Bela; Karimah, Khadijah Nurul; Prawasti, Taruni Sri; Dorly; Priawandiputra, Windra
HAYATI Journal of Biosciences Vol. 31 No. 6 (2024): November 2024
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.31.6.1095-1105

Abstract

Stingless bees (Apidae: Meliponinae) are distributed in the tropics, and there are more than 600 species worldwide, Forty-six species were recorded in Indonesia. Nest of the species is generally found in tree holes, rocks, house walls, house wooden, bamboo cavities, and soil. Current research explores the species richness, nesting sites and morphometry of stingless bee species in the forest and settlement areas in Banten province, Indonesia. Road- and purposive sampling methods were used to explore the stingless bee species. Thirty-five body characters of each stingless bee species were measured. Results showed four stingless bee species found were Tetragonula laeviceps, Heterotrigona itama, Lepidotrogona terminata, and Tetragonula sp. The dominant species found was L. terminata in the forest, while T. laeviceps in the settlement areas. The nesting sites of stingless bees in the forests were found in the tree cavities of various plant species with tree diameter range 39.3-87.3 cm. In contrast, the nest of T. laeviceps was found in the tree of Swietenia mahagoni, Lansium parasiticum, and bamboo cavities of houses in the settlement areas. The nest entrances of stingless bees varied, i.e., oval-rounded, tubular with varied diameters, and blackish-brown in color. The internal structure of the nest consists of brood cells, pollen cells, and honey cells. Heterotrigona itama has the largest body size (5.52 mm in length), followed by L. terminata (4.99 mm in length) and T. laeviceps (3.86 mm in length). Thirty-three characters of H. itama were larger than L. terminata and T. laeviceps, except for gena width and malar length.
Diversitas Serangga Penyerbuk dan Pembentukkan Buah Tanaman Kakao (Theobroma cacao L.): Diversity of Pollinator Insects and Fruit Set of Cacao ( Theobroma cacao L.) Nugroho, Ari; Atmowidi, Tri; Kahono, Sih
Jurnal Sumberdaya Hayati Vol. 5 No. 1 (2019)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.5.1.11-17

Abstract

Cocoa (Theobroma cacao L.) is an entomophilous plant which is need insects for pollination. Pollinator insects increase cocoa’s fruit set. The aim of this research were to study diversity of pollinator insects, visiting activity of fly, Forcipomyia (Diptera), and fruit set of cocoa. Observation of pollinator insects was conducted by scan sampling method. Visiting activity of Forcipomyia were observed based on duration visit per flower, number of flowers visited per minute, and duration of activity on flowers. Pollen load on body of Forcipomyia were measured. Pollination effectiveness of insect were measured from the number and size of the cocoa fruit. Result showed that 19 species of insects visitors on cocoa flowers were observed. Nine species are pollinator of cocoa’s plants i.e. Forcipomyia, Cecidomyia, Stilobezzia, Drosophila, Orimarga, Dolichoderus, Pheidole, Megachile, and Nomia. Cocoa pollination by insects produced 3% fruit higher than flowers without insect pollination. Pollination by insects produced size and weight of fruit, and number of seed per fruit were higher than pollination without insects.
Additional nest structures and natural enemies of stingless bees (Hymenoptera: Apidae: Meliponinae) PANGESTIKA, NORITA WIDYA; ATMOWIDI, TRI; KAHONO, SIH
Jurnal Sumberdaya Hayati Vol. 4 No. 2 (2018)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.4.2.42-47

Abstract

Stingless bees (Hymenoptera: Apidae) are widely distributed in tropics and subtropics areas. Now these bees are farmed by the human because they produce honey and propolis. Natural enemies can disturb the colony that affects to nest structure and productivity of these bees. This study aimed to study the common nest structure and additional nest structure of stingless bees which caused by natural enemies. This research was conducted from August to November 2015. Samples were taken from three locations, i.e, Pasuruan (East Java), Tasikmalaya (West Java), and Rangkasbitung (Banten). Descriptive analysis was used to compare the structure and composition of the nest in bamboo and additional nest structures in relation with natural enemies. Generally, the structure and composition of the nest of stingless bees in bamboo consist of nest entrance, storage pots (honey and pollen), and brood cells. We didn’t found natural enemies of stingless bees in Pasuruan and Tasikmalaya and these colonies did not create additional nest structures. In contrast, the colonies in Rangkasbitung created additional nest structures i.e. the inner entrance covered by batumen and cerumen and also build a root-like structure. Natural enemies found in the colony at Rangkasbitung were cockroaches (Blattodea: Blattidae), histerid beetles, Platysoma leconti (Coleoptera: Histeridae), nitidulid beetles, Carphophilus sp. (Coleoptera: Nitidulidae), and ants, Pheidole sp. (Hymenoptera: Formicidae).
Keanekaragaman Musuh Alami Koloni Lepidotrigona terminata Smith (Hymenoptera: Apidae: Meliponinae): Diversity of Natural Enemies in the Colony of Lepidotrigona terminata Smith (Hymenoptera: Apidae: Meliponinae) Wicaksono, Anggun; Atmowidi, Tri; Priawandiputra, Windra
Jurnal Sumberdaya Hayati Vol. 6 No. 2 (2020)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.6.2.33-39

Abstract

The research about types of natural enemies of stinless bees Lepidotrigona terminata had been conducted in West Java. All natural enemis were identified morphologically and their habitat. There were 687 individuals of 14 species of natural enemies obtained in this research, i.e., Pseudeuophrys sp., Heliophanus sp., Argiope versicolor, Plexippus paykuli, Marpissa sp., Parasteatoda tepidariorum, Tegenaria sp., Nasutitermes javanicus, Paratrechina sp., Polyrhachis sp., Paratrechina longicornis, Rhynchium haemorrhoidale, Hemidactylus frenatus and Hemidactylus garnotii. Based on observation, spider, ants, and lizard were the predators of stingless bee. The results are expected as data and knowledge in the conservation and cultivation of stingless bees.
Diversitas Serangga yang Berasosiasi dengan Tanaman Jeruk Pamelo (Citrus maxima) : The Diversity of Insect Assemblages on Pummelo (Citrus maxima) Ria Anisa, Henta; Priawandiputra, Windra; Kahono, Sih; Atmowidi, Tri
Jurnal Sumberdaya Hayati Vol. 8 No. 1 (2022)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.8.1.8-13

Abstract

Jeruk pamelo (Citrus maxima) yang sering disebut jeruk bali merupakan spesies yang bernilai ekonomi tinggi. Di Indonesia, spesies ini memiliki beberapa kultivar. Tanaman ini berinterksi dengan banyak spesies serangga, baik sebagai predator, parasitoid, atau penyerbuk. Penelitian ini bertujuan mengukur keanekaragaman serangga yang berasosiasi dengan tanaman jeruk pamelo dan hubungannya dengan faktor lingkungan. Pengamatan keanekaragaman serangga menggunakan metode scan sampling pada 30 tanaman jeruk pamelo. Hasil penelitian didapatkan sebanyak 1.388 individu serangga yang termasuk dalam 17 spesies dalam 11 famili dan 5 ordo, yaitu Hemiptera, Orthoptera, Coleoptera, Hymenoptera, dan Lepidoptera. Spesies serangga yang dominan ditemukan adalah Camponathus sp. (Hymenoptera: Formicidae), Tetragonula laeviceps (Hymenoptera: Apidae), dan Chrysolina sp. (Coleoptera: Chrysomelidae). Jumlah individu serangga tinggi di pagi hari (pukul 07.00-08.00), sedangkan jumlah spesies tinggi pada pengamatan siang hari.
Perilaku Defensif Lebah Apis cerana Terhadap Stimulus Isopentil Asetat (IPA): Honey bee Apis cerana Defensive Behavior based on Isopentyl Acetate (IPA) Stimulus Winnie, Ruth Martha; Atmowidi, Tri; Raffiudin, Rika
Jurnal Sumberdaya Hayati Vol. 10 No. 4 (2024): 2024
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.10.4.238-244

Abstract

Honey bee workers perform colony defense behavior to maintain colony integrity against predators. The aim of this research was to explore the response of A. cerana defensive behavior by using Isopentyl Acetate (IPA) as the stimulus which is the main volatile compound in the venom. Five concentrations of IPA volume i.e. 10, 20, 30, 40, and 50 µL IPA were used as the stimulus and each volume was pipetted to a cotton ball. The cotton ball was placed 10 cm in front of the hive entrance in oscillatory motion for five minutes. Natural defensive behavior of A. cerana (balling behavior), balling temperature and A. cerana predator were observed. Observation of defensive behavior was conducted by using colonies A. cerana obtained from Parung Panjang, Bogor and Nyalidung, Sukabumi; and using colonies A. cerana obtained from Sumedang and Banjarsari, Lebak. Based on the research, five A. cerana defensive behavior responses were observed, i.e.: guarding in front of bee hive entrance, recruitment at the hive entrance, fly toward the cotton ball, balling around the hive entrance, and balling on cotton ball. A. cerana showed defensive behavior due to IPA stimulus, however, there was no significant difference (P>0.05) with the variety IPA stimulus volume. We found the temperature of 44°C inside the natural balling of A. cerana defense behavior, as the colony defense mechanism in response to the natural predator Vespa sp. wasp.
Temporal resource partitioning of the flight activities of three bee species in East Java: Pembagian sumber daya temporal dari aktivitas terbang tiga spesies lebah di Jawa Timur Shullia, Nurul Insani; Subchan, Wachju; Raffiudin, Rika; Atmowidi, Tri; Priawandiputra, Windra; Ariani, Nunik Sri; Pujiastuti; Dewi, Aisyah Nurlatifah; Sabella, Yurika Nur; Siffahk, Lutmitha Nisaul; Nisa, Weni Khoiru; Novidayanti, Aldea Anisyafera
Jurnal Entomologi Indonesia Vol 21 No 3 (2024): November
Publisher : Perhimpunan Entomologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.5994/jei.21.3.234

Abstract

The dwarf honey bee Apis florea Fabricius, was successful coexistence with larger bees, Apis cerana Fabricius and Apis dorsata Fabricius in Bangalore, India. However, there is a lack of A. florea foraging behavior that shared the same plant resources with A. cerana and stingless bee Tetragonula laeviceps (Smith) in Indonesia. This study investigated the foraging activities of two honey bee species (A. florea and A. cerana) and the stingless bee T. laeviceps, which live sympatrically and also seek environmental factors that influence the foraging behavior of bees. The flight activity was recorded on the bee farm at Jombang Regency, East Java Province, from 06.00–16.00 hours for three consecutive days. Environmental factors of temperature, humidity, and light intensity in open and close to the nest areas were recorded. This study reported that A. florea started foraging activity at 09.00, while A. cerana and T. laeviceps started to forage earlier, at 06.00 in the morning. Therefore, the foraging activities of bees in East Java, revealed temporal resource partitioning, which confirmed the results of a previous study in Bangalore. The temperature and humidity mainly influenced the foraging activity of the three bee species (P<0,001). Temporal resource partitioning in A. florea suggests a foraging strategy that coexists with sympatric honeybees and stingless bees. The high flight activity of A. florea at midday suggests that this species can adapt to high temperatures. This result implies that A. florea could be a potential future pollinator in tropical regions facing the issue of a warming climate.
Co-Authors Abdilah, Nurullah Asep Afriansyah Afriansyah Andi Gita Maulidyah Indraswari Suhri Anggun Wicaksono Anisa, Henta Ria Annisa Sendekia Lubis Araz Meilin Ari Nugroho Ariani, Nunik Sri Arif Maulana Arif Rohmatullah, Arif Asmini Asmini Ayub Wirabuana Putra Bahar, Irnayanti Bambang Suryobroto Berry Juliandi Budi Setiawan DAMAYANTI BUCHORI Dewi, Aisyah Nurlatifah Dimas Adjie Prasetyo Djunijanti Peggie Djunijanti Peggie Djunijanti Peggie, Djunijanti Dorly Dorly Dorly Dwijayanti, Endah Dyah Perwitasari Elida Hefni Siregar Erawati, Nety Virgo Fahri Fahri Febiriani, Tia Vina Fitradiansyah, La Ode Fitria, Restu Fitriya, Jazirotul Fitriya, Jazirotul Hanna Latifa Hasan, Phika Ainnadya Hepburn, Randall Hepburn, Randall Ilyasov, Rustem Imai, Hiroo Irnayanti Bahar Jajang Miharja Jasmi Jasmi Jasmi Jasmi Jauharlina Jauharlina Jauharlina Jauharlina Junaidi, Muhamad Kahono, dan Sih Kanthi A. Widayati KANTHI ARUM WIDAYATI Karimah, Khadijah Nurul Kurnianingsih Kurniawan, Yana Magdalena Litaay Mahardika Gama Pradana Maker, Ursula Paulawati Marchika Rimadhanti Irmanda Rani Mosi Retnani Fajarwati Muhammad Al Anshari Muhammad Fahmi Manarudin Muhammad Kadri, Muhammad Mujiono, Nova Nana Supriatna Nawangsari Sugiri NETY VIRGO ERAWATI Nina Ratna Djuita Nisa, Weni Khoiru Nisfia Rakhmatun Nisa Nofialdi Nofialdi Noorchaliza, Fauzia Nova Mujiono NOVA MUJIONO Novidayanti, Aldea Anisyafera Nurul Insani Shullia Nurul Magfirah Sukri Oktaviani, Widia Bela PANGESTIKA, NORITA WIDYA Pradana, Mahardika Gama Pradina Purwati Puji Lestari PUJI LESTARI Puji Rianti Puji Riyanti Pujiastuti PURNAMA HIDAYAT Purnama, Indra Putera, Alexander KS Ratih Rusman Rendy Setiawan Ria Anisa, Henta RIKA RAFFIUDIN Sabella, Yurika Nur Sefriatin Nurmaulani Septiani Dewi Ariska Siffahk, Lutmitha Nisaul Sih Kahono Sih Kahono Sih Kahono Sih Kahono Sih Kahono Sih Kahono Simanjuntak, Juniarto Gautama Sitompul, Rahmadi SJAFRIDA MANUWOTO Soesilowati Hadisoesilo, Soesilowati Sugeng Utomo Sugeng Utomo Sukri, Nurul Magfirah Sulistijorini SUTRISNA, ANDENG Syahras Fathin Aminuddin, Syahras Fathin TARUNI SRI PRAWASTI Taruni Sri Prawasti Taruni Sri Prawasti TARUNI SRI PRAWASTI TATIK CHIKMAWATI Tri Heru Widarto Wachju Subchan Waskito, Adi Wicaksono, Anggun Widjaja, Candra WINDRA PRIAWANDIPUTRA, WINDRA Winnie, Ruth Martha Woro Anggraitoningsih Noerdjito Woro Anggraitoningsih Noerdjito Woro Noerdjito Wulandari, Anggreny Pramitha Yana Kurniawan Yodhy, Lintang Yulia Pujiastuti YULIA PUJIASTUTI