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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
Arjuna Subject : -
Articles 1,091 Documents
 89   90   91   92   93 
The Survival, Growth, and Accelerating Morphological Development of Stichopus horrens are Affected by the Initial Larval Stocking Densities Sembiring, Sari Budi Moria; Setiawati, Ketut Maha; Widiastuti, Zeny; Hutapea, Jhon Harianto; Gunawan, Gunawan; Setiadi, Ananto; Haryanti; Giri, Nyoman Adi Asmara
HAYATI Journal of Biosciences Vol. 32 No. 1 (2025): January 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.1.233-240

Abstract

Stichopus horrens is highly exploited due to their use as a pharmaceutical ingredient. Since then, this species has become extinct; therefore, it is necessary to start aquaculture. Gonad maturation and broodstock spawning succeeded, but the optimum larval-rearing stocking density has not yet been determined. Therefore, the present study aimed to determine the optimal stocking density to improve survival and accelerate the development of larval morphology. Three treatments were used: 100, 150, and 200 larvae L-1, each with four replicates. Twelve 100-litre plastic containers filled with 80 litres of seawater as larval rearing media were placed in a concrete tank with a water-bath system using a heater and a thermostat (29.0°C±1.0°C). The larvae were fed a mixture of microalgae (Chaetoceros muelleri, Isochrysis galbana, and Nitzchia sp.) twice a day-1. The data collected included survival and growth rates, larval morphological development, and water quality. The fastest metamorphose from auricularia to the doliolaria stage occurred in 100 larvae L-1, 15 days after hatching. The highest survival rate, growth rate, and percentage of larvae metamorphose to the doliolaria stage were obtained in the 100 larvae L-1 as 26.38%, 26.4 µm day-1, and 65.27%, respectively, and were significantly different (P<0.05). A stocking density of 100 larvae L-1 was optimal for promoting survival and growth and accelerating the morphological development of auricularia to the doliolaria stage.
Anti-Inflammatory Activity of Phyllanthus niruri L. Leaf Extract: In Vitro Study on RAW 264.7 Macrophage Cells and In Silico Analysis Intan Wiratmini, Ngurah; Pharmawati, Made; Sukmaningsih, Anak Agung Sagung Alit; Joko Raharjo, Sentot; Widowati, Wahyu
HAYATI Journal of Biosciences Vol. 32 No. 2 (2025): March 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.2.287-299

Abstract

Phyllanthus niruri L. is a medicinal plant recognized for its wide range of therapeutic benefits, particularly its anti-inflammatory properties. This research focused on assessing the impact of P. niruri leaf extract on pro-inflammatory cytokines in vitro using RAW 264.7 macrophage cells, analyze its phytochemical composition, and validate its potential anti-inflammatory mechanisms through molecular docking studies. The extract was analyzed for its phytochemical composition using LC-MS, revealing the presence of sesquiterpene glycosides, flavonoid glycosides, and tannins among the identified compounds. Cell viability tests showed that the extract was not toxic to the cells at concentrations up to 50 µg/ml. Treatment with the extract significantly reduced the levels of pro-inflammatory cytokines TNF-α and IL-1β in LPS-induced RAW 264.7 cells, with the most effective concentration being 50 µg/ml. Molecular docking studies further supported the anti-inflammatory potential of the extract by demonstrating its ability to inhibit COX-2 and TNF-alpha. These findings suggest that P. niruri leaf extract has promising anti-inflammatory properties and needs further investigation as a potential treatment for inflammatory diseases. The in silico study provided insights into the molecular interactions between the extract's compounds and inflammatory targets, supporting its anti-inflammatory mechanism of action.
Endophytic Actinomycetes of Liliaceae Plants as Biocontrol Agents of Fusarium oxysporum f.sp. cepae Causes of Basal Plate Rot Disease on Shallots Marianah, Lisa; Munif, Abdul; Giyanto; Tondok, Efi Toding; Nawangsih, Abdjad Asih
HAYATI Journal of Biosciences Vol. 32 No. 1 (2025): January 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.1.241-253

Abstract

Basal plate rot disease is one of the critical diseases in shallot plants. Control using synthetic chemical fungicides is still unable to overcome this problem, and it hurts the environment and reduces the population of essential microbes in plants. Endophytic actinomycetes have potential as biocontrol agents. They are reported to be able to inhibit the growth of pathogens, induce plant resistance, produce cell wall degrading enzymes, and promote growth. This research aims to obtain endophytic actinomycete isolates that have the potential to inhibit the growth of the fungus Fusarium. oxysporum f.sp. cepae causes of basal plate rot disease in shallot, and evaluate its inhibitory mechanism. Endophytic actinomycetes were isolated from tubers and roots of Liliaceae plants collected from shallots-production center area. The isolate obtained was tested for biosafety and continued with its inhibitory effectiveness against the fungus F. oxysporum f.sp. cepae in vitro, ability to induce resistance, and plant growth promotion test. The six best isolates were selected based on weighting using AHP and identified molecularly. The endophytic actinomycetes of Liliaceae plants can inhibit the growth of F. oxysporum f.sp. cepae up to 63.49% with an antibiosis mechanism, producing chitinase enzymes that cause lysis, induce resistance, and produce growth hormones such as IAA. Streptomyces sp. can inhibit the fungus F. oxysporum f.sp. cepae causes basal plate rot disease on shallot by producing antifungal compounds and chitinase enzymes, inducing resistance, and producing growth hormone.
Small But Healthy: An Adaptive Response in Baduy Children Rohmatullayaly, Eneng Nunuz; Shelvie Raffiza Nasihin; Kharisma Nurinsani Maulidinda; Sinta Septi Pangastuti; Tetri Widiyani
HAYATI Journal of Biosciences Vol. 32 No. 1 (2025): January 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.1.185-195

Abstract

Life history explains natural selection, resulting in phenotypic plasticity that can be studied through the growth pattern (growth rate and body size). The Baduy People, one of the indigenous peoples in Indonesia, exhibit prolonged growth, a slow growth rate, a low peak growth spurt, and small adult size as an adaptation to challenging biocultural conditions. The life history trade-offs of the Baduy People are demonstrated by ontogenetic allometry, which synchronizes between skeletal growth and future reproduction. The study aims to characterize the growth of Baduy children aged 0-5 years with more precise ‘tracking’ of developmental plasticity. We collected anthropometric data (body height-BH, body weight-BW, head circumference-HC, body mass index-BMI) using a cross-sectional method from 118 girls and 97 boys aged 0-5 years across 24 Baduy Luar hamlets. Data were analyzed with Generalized Additive Models for Location, Scale, and Shape (GAMLSS) in R version 4.2.1. Nutritional statuses were categorized based on the BMI z-score. The growth pattern showed a decline in growth rate after birth until 2 or 3 years, but the body size increased yearly. The body size (BH and BW) of Baduy children is lower than the Indonesian National Synthetic Growth Charts (INSGC), but most of them have a good nutritional status (>80%). This finding is consistent with the "small but healthy" hypothesis: a small body is an advantageous evolutionary strategy for energy efficiency and maximizing growth potential in challenging biocultural conditions.
Potential Probiotic Yeasts of the Pichia Genus Isolated from ‘Dadih’, a Traditional Fermented Food of West Sumatra, Indonesia Chihombori, Tatenda Calvin; Mustopa, Apon Zaenal; Astuti, Rika Indri; Mutiara, Ilma; Refli, Redoyan; Umami, Rifqiyah Nur; Fatimah; Irawan, Herman; Ekawati, Nurlaili; Trinugroho, Joko P; Akmaliyah, Rizna; Chairunnisa, Sheila; Amani, Febriyanti Nur; Manguntungi, Baso; Hertati, Ai; Mamangkey, Jendri
HAYATI Journal of Biosciences Vol. 32 No. 2 (2025): March 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.2.320-340

Abstract

Fermented buffalo milk, known as dadih, serves as a reservoir of potential probiotic yeasts. Over the past two decades, probiotic yeasts have gained increasing attention in both basic and clinical sciences due to their health benefits. This study aimed to isolate and characterize probiotic yeasts from dadih. Yeasts were isolated using yeast Extract, peptone, and dextrose (YPD) medium, and molecularly identified through 18S-rRNA sequencing. Probiotic potential was assessed by evaluating resistance to acidic pH, bile salts, proteolytic, lipolytic, and hemolytic activities. Secondary metabolites produced during fermentation were tested for antimicrobial properties. GBT30 and GBT37 isolates were selected based on their superior performance in probiotic property assays for further analysis. Molecular identification revealed these isolates as Pichia occidentalis (GBT30) and Pichia kudriavzevii (GBT37). Both strains demonstrated in vitro survivability under simulated gastrointestinal conditions and exhibited antimicrobial activity. Whole-genome sequencing of P. kudriavzevii GBT37 identified a genome size of 10,906,850 base pairs, distributed across four chromosomes with a GC content of 38.26%. Notably, secondary metabolite biosynthesis genes were located on contig 7. In addition, 26 probiotic-related genes, including GSY1, HSC82, HSP104, TPS1, ARN1, FLO1, ALA1, SIR2, and others, were identified in P. kudriavzevii GBT37, indicating its potential as a probiotic yeast. The traditional fermentation process of dadih offers probiotic yeasts with promising health benefits, supporting its potential as a functional food.
Dynamic Changes of Gut Microbiome in Borneo Earless Monitor Lizard Across Different Diets Diana, Milsa Solva; Fitri, Ainissya; Anja, Meryandini; Ridwan, Roni
HAYATI Journal of Biosciences Vol. 32 No. 1 (2025): January 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.1.80-88

Abstract

The Borneo earless monitor lizard (Lanthanotus borneensis) is one of the endemic animals of Indonesia. In 2019, the IUCN listed L. borneensis as an ‘endangered’ species. The declining population of the L. borneensis is a major concern for conservation efforts. One of the efforts to conserve endangered wild animals is to know the gut microbiome profile and the relationship between the host and the bacterial community in the body, which is associated with an influence on health. This research aims to determine the gut microbiome profile of animals with metagenomic analysis using Next-Generation Sequencing (NGS). This research was carried out by providing three feed types: earthworms, shrimp, and fish. Sample feces was collected by cloacal swabs and the DNA was sequenced using the Illumina NGS technique in the V4 16S rRNA region to examine the gut microbiome. The results of the metagenomic analysis showed differences in bacterial abundance in each feed treatment. The L. borneensis treated with earthworms and fish were dominated at the phylum level by Proteobacteria and Bacteriodota, while in shrimp, the phyla were Proteobacteria and Firmicutes. Index Shanon, Simpson, and the rarefaction curve also showed the highest bacterial diversity found in the fish treatment. This study can be used as a reference in designing suitable feed formulations for effective captive breeding for the conservation of L. borneensis
Characterization of Antibacterial Compounds from Marine Sponge-associated Streptomyces spp. against Some Pathogenic Bacteria Efendi, Firda Sri; Budiarti, Sri; Lestari, Yulin
HAYATI Journal of Biosciences Vol. 32 No. 1 (2025): January 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.1.55-69

Abstract

The increasing trend of antibiotic resistance among pathogenic bacteria is a worldwide problem. Streptomyces produce a number of bioactive compounds such as antibacterial. This study aimed to investigate the effect of different media and incubation time in increasing the antibacterial activity of marine sponge-associated Streptomyces spp. and characterize antibacterial compounds of marine sponge-associated Streptomyces spp. against pathogenic bacteria. Among the three tested media and some days of incubation times, Streptomyces spp. produce more antibacterial activity when grown using modified molasses medium at 15 days incubation. The ethyl acetate extracts of Dbi28t exhibited a significant inhibitory zone against Extended Spectrum β-Lactamase (ESBL)-producing Escherichia coli, Providencia rettgeri then followed by Proteus mirabilis and Pseudomonas putida and the results were higher than some commercial antibiotics. This study has identified nine antibacterial compounds in Dbi28t using Liquid Chromatography-tandem Mass Spectrometric (LC-MS/MS) analysis, with the most abundance belonging to pumilacidin A, then followed by pumilacidin B, surfactin B, surfactin A, phenazostatin B, chalcomycin B, neopyrrolomycin C, saquayamycin A and saphenamycin. This work provides the first report from a Streptomyces sp. Dbi28t produced pumilacidin, surfactin and other bioactive compounds with the modified molasses medium for optimization of characterization of its antibacterial compounds.
Relative abundance, activity pattern and habitat suitability of Great Argus (Argusianus argus grayi) in Sungai Wain Protected Forest, Balikpapan, East Kalimantan Ramadhanti, Hanny; Perwitasari-Farajallah, Dyah; Mulyani, Yeni Aryati; Rianti, Puji
HAYATI Journal of Biosciences Vol. 32 No. 2 (2025): March 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.2.507-515

Abstract

Great Argus (Argusianus argus) is a globally threatened species that is protected by law in Indonesia. This species is a habitat specialist that tends to be confined to primary forests and is susceptible to human disturbance and environmental change. Sungai Wain Protected Forest (SWPF) is an isolated lowland rainforest in Kalimantan. The rising deforestation rate has threatened species sustainability in recent decades, including the Great Argus in SWPF. This study aimed to systematically analyze camera trap data on the Great Argus's abundance, activity patterns, and habitat suitability prediction in SWPF. We used camera trap data from 2018-2022 at the SWPF. Great Argus's lowest relative abundance index was in 2020, and the highest was in 2022. Overall, the relative abundance index of the Great Argus was approximately 3.125 independent events per 100-day trap night. The activity pattern of the Great Argus started at dawn and then constantly decreased until dusk. The habitat suitability prediction for the Great Argus was mostly in primary forests. Distance to road and building were the variables that contributed the most to the results of habitat suitability modeling. Habitat loss and suitability are the determining factors for the sustainability of significant argus populations.
The Potency of Centella asiatica Leaf Extract on VEGF Expression and Angiogenesis in Second-Degree Burn Wound in Mice Utoyo, Frederick Surya; Widowati, Wahyu; Ratnawati, Hana
HAYATI Journal of Biosciences Vol. 32 No. 1 (2025): January 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.1.140-146

Abstract

Burn injuries present a significant global health challenge, with the highest incidence rates reported in Southeast Asia, including Indonesia. Healing burn wounds is a complex and dynamic process involving various cellular and molecular mechanisms, prominently featuring the role of Vascular Endothelial Growth Factor (VEGF) in tissue regeneration and wound repair. VEGF is crucial for inducing and regulating angiogenesis and supplying oxygen and nutrients to the healing tissue. This study aims to evaluate the potential of pegagan (Centella asiatica) leaf extract cream 1%, 3%, and 5% daily for 14 days in enhancing VEGF expression and angiogenesis in second-degree burn wounds in mice (Mus musculus). This study investigates the application of C. asiatica extract cream on second-degree burn wounds in mice, comparing its effects on VEGF protein expression and angiogenesis to those of base cream and silver sulfadiazine cream, with outcomes evaluated using immunohistochemistry (IHC) and hematoxylin and eosin (HE) staining methods. Our findings suggest that C. asiatica extract cream promotes reduced burn wound size, significant upregulated VEGF expression, and enhanced angiogenesis in treating burn wounds compared to positive control, with a 5% dose having the best result. The study concludes that C. asiatica extract cream may effectively treat burn wound healing through enhancing VEGF expression and angiogenesis.
Effects of Copper on Euglena sp. Local Strains and Remediation Capabilities Ardipeni, Witia; Suyono, Eko Agus; Dewayanto, Nugroho; Mufida, Na’imatul; Erfianti, Tia; Amelia, Ria; Kurnianto, Dedy
HAYATI Journal of Biosciences Vol. 32 No. 2 (2025): March 2025
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.32.2.387-394

Abstract

One of the well-known industries in Yogyakarta is the Kotagede silver craft, which produces heavy metal waste, one of which is copper. The copper content in the liquid waste of electroplating Kotagede silver crafts is 4.628 mg/L. At the same time, Indonesian Government Regulation No. 22 (2021) stipulates a critical limit of Copper (Cu) content in river and lake water, which is 0.2 mg/L. The purpose of the study was to analyze the effects of copper on local strains of Euglena sp. (growth, photosynthetic pigment production, and superoxide dismutase enzyme) as well as the effectiveness of Euglena sp. in copper remediation. The study was conducted by adding a copper solution obtained from CuSO4•5H2O to the culture medium of Euglena sp. The parameters observed in the study were growth (number of cells and biomass), photosynthetic pigment content (chlorophyll a, chlorophyll b, carotenoid total), Superoxide dismutase enzyme of Euglena sp. as well as the effectiveness of Euglena sp. in copper remediation. The results showed that copper inhibited the growth of Euglena sp. The highest growth was the control treatment (without adding copper to the culture medium). Likewise, the content of photosynthetic pigments and the culture of Euglena sp. exposed to copper were lower when compared to the control culture. The activity of the SOD enzyme is increased in cultures exposed to copper. The result of the research is Cu metal absorption efficiency by Euglena sp. by 21.93%, 10.93%, and 9.47% for a Cu concentration of 10 ppm, 15 ppm, and 20 ppm.

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