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All Journal HAYATI Journal of Biosciences VALENSI Cakrawala Pendidikan Jurnal Kependidikan: Penelitian Inovasi Pembelajaran JPMS (Jurnal Pendidikan Matematika dan Sains) JOURNAL OF EDUCATION Jurnal Penelitian Saintek CAKRA KIMIA (Indonesian E-Journal of Applied Chemistry) CHEMISTRY PROGRESS Jurnal Pendidikan Kimia Indonesia Jurnal Sains Dasar Jurnal Pendidikan Indonesia Jurnal Matematika & Sains Journal of Mathematical and Fundamental Sciences Alchemy Jurnal Penelitian Kimia TREUBIA BERITA BIOLOGI JURNAL BIOLOGI INDONESIA ZOO INDONESIA Jurnal Penelitian Pendidikan IPA (JPPIPA) ALCHEMY Jurnal Penelitian Kimia Jurnal Pendidikan Kimia (JPKim) Indonesian Journal of Chemistry Formatif: Jurnal Ilmiah Pendidikan MIPA Jurnal Pengabdian Masyarakat MIPA dan Pendidikan MIPA Indonesian Journal on Learning and Advanced Education (IJOLAE) Molekul: Jurnal Ilmiah Kimia Jurnal Entomologi Indonesia BIO-EDU: Jurnal Pendidikan Biologi Jurnal Inovasi Pembelajaran Kimia (Journal Of Innovation in Chemistry Education) Zoo Indonesia INSECTA: Integrative Science Education and Teaching Activity Journal Makara Journal of Science UNESA Journal of Chemical Education Jurnal Pengabdian dan Pemberdayaan Masyarakat Indonesia AMMA : Jurnal Pengabdian Masyarakat Jurnal Elemen Kimia Jurnal Riset Pembelajaran Kimia
Hari Sutrisno
Universitas Negeri Yogyakarta
Agriculture, Biological Sciences & Forestry Humanities Astronomy Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Computer Science & IT Decision Sciences, Operations Research & Management Earth & Planetary Sciences Education Electrical & Electronics Engineering Energy Engineering Environmental Science Law, Crime, Criminology & Criminal Justice Materials Science & Nanotechnology Mathematics Nursing Physics Public Health Social Sciences Other

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Journal : TREUBIA

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MOLECULAR PHYLOGENY OF INDONESIAN AGANAINE MOTHS (Lepidoptera: Noctuidae) BASED ON CO I GENE Sutrisno, Hari
TREUBIA Vol 38 (2011): Vol. 38, December 2011
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1417.713 KB) | DOI: 10.14203/treubia.v38i0.544

Abstract

Systematic of Aganaine moths has been long in dispute since they show both noctuids and arctiids morphological characteristics. Even the relationship among genera within Indonesian Aganaines is still unclear, and their phylogenetic relationships need to be reexamined since the morphological hypothesis proposed previously was not able to show the relationship among them. In order to clarify the phylogenetic relationship among five genera of Indonesian Aganaines, I used sequence of mitochondrial CO I gene (610-bp) to reconstruct their phylogenetic relationship using MP and NJ tree building methods. The results showed that the phylogenetic relationship proposed in this study contradicts the previous hypothesis. The monophyly of subfamily Aganainae has a strong bootstrap support at any tree building methods (88-95%). Neochera was divided into two clades and branched off first and then was followed by Euplocia, Peridrome, Agape, and Asota. The similarity between the previous hypothesis and this study is only on the sister-group relationship between Euplocia and Peridrome and the division of Neochera into two clades. The synapomorphy of Euplocia + Peridrome is a large androconial patch on the forewing upperside at the costal base. This study also showed that all internal nodes gained least supports. It indicates that the relationships among internal nodes proposed here were poorly supported due to the limited number of species and only a short fragment of one mitochondrial gene included in the analysis. Further studies are needed to be done by including more other species, other nuclear genes, and genitalia characters in order to test the validity of the relationships proposed here.Key words: Aganaine, Asota, Agape, Euplocia, Peridrome, Neochera, phylogeny
PHYLOGENY OF Glyphodes Guenee (Lepidoptera: Crambidae: Spilomelinae) BASED ON NUCLEOTIDE SEQUENCE VARIATION IN A MITOCHONDRIAL CO I GENE: CONGRUENCE WITH MORPHOLOGICAL DATA Sutrisno, Hari
TREUBIA Vol 33, No 1 (2003): Vol. 33 No. 1, December 2003
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (4743.987 KB) | DOI: 10.14203/treubia.v33i1.562

Abstract

The phylogeny of Glyphodes Cuenee (14 species) and four outgroup species (Feltia jaculifera, Metallarcha aureodiscalis, Talanga sexpunctalis and Agrioghrypta eurytusalis) was inferred fromnucleotide sequence variation across a 686-bp region in the CO I gene. Over the entire 686-bp region, 19.9% sites were informative (3.35% in the 1st-, 0.29% in the 2nd - and 16.32% in 3rd - codon position). The results also showed that the base composition of this region was high A+T biased (C= 0.258) and the averages ofestimated sequence divergence in the comparisons between species within and between groups were 7.1% and 9.0%, respectively. In general, the phylogeny based on CO I gene by including all substitutions or any partial data set used in this study was not only able to recover almost the three monophyletic groups withinGlyphodes as previously recovered by morphological phylogeny but also showed more clearly the relationships among them: Glyphodes group 2 was branched off first then followed by group 3 and 1.Key words: CO I, Glyphodes, morphology, phylogeny
SPECIES STATUS OF A RICE YELLOW STEM BORER, SCIRPOPHAGA INCERTULAS (LEPIDOPTERA: PYRALIDAE) BASED ON CO I GENE SEQUENCES Sutrisno, Hari -
TREUBIA Vol 36 (2008): Vol. 36, December 2008
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v36i0.100

Abstract

Study on species status of a rice yellow stem borer, Scirpophaga incertulas(Lepidoptera: Pyralidae) was conducted. The objectives of the study were to explorethe genetic variation among populations of S. incertulas in Java and to clarify itsspecies status based on CO I gene sequences. The results showed that from the entire680-bp region of sequences from10 population in Java, 99 % were constant. The averageof estimated sequence divergences in the comparisons among populations withinS.incertulas was very low about 0.01%. The base composition was slightly A+T biased(C:0.15) with G+C contents was 37.09%. The result of phylogenetic analysis showedthat S.incertulas is a single species with S.innotata as its sister group. The differenceson the body-size, black spot at female’s forewing, forewing length within S.incertulasare solely natural variation.
MITOCHONDRIAL DNA VARIATIO OF THE RICE YELLOW STEM BORER, Scirpophaga incertulas, (LEPIDOPTERA: CRAMBIDAE) IN JAVA, INDONESIA sutrisno, hari
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.556

Abstract

Scirpophaga incertulas is one of economically important rice pests in South East Asia, including Indonesia. Systematic investigation on biological characteristics of ecological races based on recently changed of agricultural practiced and environment has been conducted  in order to asses knowledge on genetic variation of population of S. incertulas in Indonesia. A 685 bp segment of mitochondrialDNA COII was amplified from 42 different yellow stem borer samples from five locations in Java. The objectives of this study were to generate mitochondrial CO II  sequences for all available yellow stem borer  samples and to define haplotypes and nucleotide sequence diversity of the different yellow stem borer populations. Six different haplotypes (YSB1, YSB2, YSB3, YSB4, YSB5 and YSB6) were identified in yellow stem borer populations. The majority of the sampled individuals caried haplotype YSB2. Overall, the results of Tajima’s test statistic indicated that the population of Java was D= 0.85201, which suggests that there was no indicative of purifying selection or there was no presence of deleterious mutation segregating in the population. However, the results were not significant (P> 0:10) and additional studies are required to confirm this finding.Key words: Scirpophaga incertulas, yellow stem borer, MitochondrialDNA COII 
INDOBIOSYS – DNA BARCODING AS A TOOL FOR THE RAPID ASSESSMENT OF HYPERDIVERSE INSECT TAXA IN INDONESIA: A STATUS REPORT Balke, Michael; de Araujo, Bruno Cancian; Schmidt, Stefan; von Rintelen, Thomas; Sutrisno, Hari; von Rintelen, Kristina; Ubaidillah, Rosichon; Hauser, Chrisoph; Peggie, Djunijanti; Narakusumo, Raden Pramesa
TREUBIA Vol 44 (2017): Vol. 44, December 2017
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v44i0.3381

Abstract

A status report with preliminary results for the IndoBioSys project is presented and the impact of the project results for our knowledge of the Indonesian fauna is discussed. Using the REST API available on the Barcode of Life Data System we recover 21,153 public records (3,390 BINs) from Indonesia and compare against the 21,813 records (3,580 BINs) generated by the IndoBioSys project. From all IndoBioSys BINs, 3,366 (94%) are new to Indonesia. IndoBioSys is responsible for a BIN increase of 36.5% in Lepidoptera, 62.6% in Trichoptera, 986% in Coleoptera, and 1,086% in Hymenoptera. After two years of the IndoBioSys project, the Museum Zoologicum Bogoriense became the depository institution of 51.9% of Lepidoptera records, 95.8% of Coleoptera records, 97.6% of Hymenoptera records and 59.4% of Trichoptera records for Indonesia available on Barcode of Life Data System (BOLD). Now, with 55% of all Indonesian records available on BOLD, it is the most important depository for records of Indonesian genetic biodiversity, housing more than 23,000 new voucher specimens in their collections. Before IndoBioSys, the Museum Zoologicum Bogoriense was responsible for only 9% of all records available in the Barcode of Life Data System for Indonesia, showing the importance of those pipelines in empowering the local institutions in becoming the reference depository of the local fauna.
INDOBIOSYS – DNA BARCODING AS A TOOL FOR THE RAPID ASSESSMENT OF HYPERDIVERSE INSECT TAXA IN INDONESIA: A STATUS REPORT Bruno Cancian de Araujo; Stefan Schmidt; Thomas von Rintelen; Hari Sutrisno; Kristina von Rintelen; Rosichon Ubaidillah; Chrisoph Hauser; Djunijanti Peggie; Raden Pramesa Narakusumo; Michael Balke
TREUBIA Vol 44 (2017): Vol. 44, December 2017
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v44i0.3381

Abstract

A status report with preliminary results for the IndoBioSys project is presented and the impact of the project results for our knowledge of the Indonesian fauna is discussed. Using the REST API available on the Barcode of Life Data System we recover 21,153 public records (3,390 BINs) from Indonesia and compare against the 21,813 records (3,580 BINs) generated by the IndoBioSys project. From all IndoBioSys BINs, 3,366 (94%) are new to Indonesia. IndoBioSys is responsible for a BIN increase of 36.5% in Lepidoptera, 62.6% in Trichoptera, 986% in Coleoptera, and 1,086% in Hymenoptera. After two years of the IndoBioSys project, the Museum Zoologicum Bogoriense became the depository institution of 51.9% of Lepidoptera records, 95.8% of Coleoptera records, 97.6% of Hymenoptera records and 59.4% of Trichoptera records for Indonesia available on Barcode of Life Data System (BOLD). Now, with 55% of all Indonesian records available on BOLD, it is the most important depository for records of Indonesian genetic biodiversity, housing more than 23,000 new voucher specimens in their collections. Before IndoBioSys, the Museum Zoologicum Bogoriense was responsible for only 9% of all records available in the Barcode of Life Data System for Indonesia, showing the importance of those pipelines in empowering the local institutions in becoming the reference depository of the local fauna.
Co-Authors . DARMAWAN . Ismail . SUPUTA Abukasim, Sudarto Abukasim, Sudarto M. Achmad Saiful Whatoni Ajeng Widya Indriana Alita, Alita Alusti Cundo Manik Alusti Cundo Manik Amirah, Giska Anik Nur Laili Antonia Fransiska Laka Ariswan Ariswan Ariswan Ariswan Ariswan Ariswan Ariswan Ariswan Ariswan, Ariswam Balke, Michael Bruno Cancian de Araujo Cahyorini Kusumawardani Chrisoph Hauser CIPTO WALUYO Dahlan, Jafar Das Salirawati de Araujo, Bruno Cancian Desfi Annisa Desfi Annisa Desfi Annisa, Desfi Dewanty Rafu, Maria Djunijanti Peggie Djunijanti Peggie, Djunijanti Dwi Anggi Marini Dyah Purwaningsih, Sugi Rahayu Pujianto Eddy Nurtjahya Eko Wahyu Budi Darmawan Eli Rohaeti Endang Dwi Siswani Endang Dwi Siswani Endang Widjajanti Laksono FX Fajar Naqsyahbandi Hagus Tarno Hari Purnomo Hauser, Chrisoph I WAYAN SUANA Ifan Rivaldo Iman hidayat Isnaya Khamida Zulfah Jajang Muhariyansah Jayanti, Sandra Desfa Jayawarsa, A.A. Ketut Kristian Handoyo Sugiyarto Kristina von Rintelen Kun Sri Budiasih M.Sulthon Nur Harman Syah Putra Maesaroh Maesaroh Maesaroh Maesaroh Maria Tensiana Tima Michael Balke Mulyawan Mursyidin, Abdul Halim Narakusumo, Raden Pramesa Nasihah, Durrotun Nensi Ulfatun Khasanan Nining Rahaningsih NUNUK WIDYASTUTI Nur Kholifah, Dwi Pusbelina, Aurelia Revi Raden Pramesa Narakusumo Ratna Novita Sari Retno Arianingrum Rizqiyah, Fatihatur ROSICHON UBAIDILLAH Schmidt, Stefan SISWO POLANDONO Sri Novita Yanda Stefan Schmidt Suasti Ayu Triwijiastuti Sudarsono Suharto . Suharto Suharto Sunarto Sunarto Sunarto Sunarto Susila Kristianingrum Thomas von Rintelen Toto Himawan Vina Ayu Mu'izayanti von Rintelen, Kristina von Rintelen, Thomas wan zahara zaitu hania Wipsar Sunu Brams Dwandaru Wisanggeni Bayu Aji Yanda, Sri Novita Yanti, Insani Efrili