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Karakterisasi Morfologi dan Sifat Kuantitatif Gandum (Triticum aestivum L.) di Dataran Menengah Widowati, Sartika; Khumaida, Nurul; Ardie, Sintho Wahyuning; Trikoesoemaningtyas, dan
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 44 No. 2 (2016): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (507.256 KB) | DOI: 10.24831/jai.v44i2.13485

Abstract

ABSTRACTIndonesia is one of the largest wheat importers. Suitable environmental condition for wheat needs to be studied if wheat is going to be widely cultivated in Indonesia. The adaptability of wheat grown in various climates and altitudes is one of the important aspects. The objective of this experiment was to study the quantitative and morphological character of wheat grown in middle land (540 m asl) in Bogor, West Java. The experiment was arranged in randomized complete block design with three replications. Wheat genotypes used were three national varieties (Nias, Selayar, and Dewata), four new improved varieties (Guri 3 Agritan, Guri 4 Agritan, Guri 5 Agritan, and Guri 6 Unand), and one introduced genotype (SBD). Data were collected for several quantitative variables and seventeen morphological characters based on UPOV descriptor. The result showed that wheat growth was restricted in Bogor. Genotype determined plant height, leaf number, ear length, root length, number of spikelet, harvest time, seed weight, number of tillers, and plant biomass. Based on ear length, grain weight, and plant biomass, Guri 3 Agritan had the highest production than the other genotypes.Keywords: diversity, genetic relationship, high temperature, introduced genotype, phylogenetic
Characterization of Full Length Sequence of JJ3 Isolated from Shade Tolerant Soybean Khumaida, Nurul; Kisman, ,; Sopandie, Didy
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 36 No. 2 (2008): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (97.794 KB) | DOI: 10.24831/jai.v36i2.13696

Abstract

The aim of this study was to characterize full length sequence of JJ3 isolated from shade tolerant soybean. The characterization of full length sequence involved analyses of structure of full length sequence, open reading frame (ORF) or coding sequence (CDS), and homology. The analyses of JJ3 full length sequence structure were done using GeneScanW program, coding sequence (CDS) or open reading frame (ORF) using ORF Finder program, and the homology of JJ3 full length sequence were done using BLAST and clustalW programs. Results showed that the full length sequence of JJ3 consisted of single exon and polyA. Single exon was a coding sequence (CDS) 633 bp produced open reading frame (ORF) with 210 amino acid deduction comprised of 136 conserved amino acids and 77 varied amino acids. The conserved domain of JJ3 produced functional protein, PsaD photosystem I (PSI) subunit, related to photosynthetic transport electron in PSI reaction center. The full length of JJ3 homolog to psaD, a gene encoding protein subunit photosystem I (PSI) related to mechanism of plant adaptation to shade stress, in wood tobacco (Nicotiana sylvestris), rice (Oryza sativa), tomato (Lycopersicon esculentum), barley (Hordeum vulgare), spinach (Spinacia oleracea), Arabidopsis (Arabidopsis thaliana), and potato (Solanum tuberosum).Key words: full length sequence, gene, homology, shade tolerant, soybean
In Vitro Selection of Four Soybean Genotypes using PEG for Drought Tolerance Saepudin, Adam; Khumaida, Nurul; Sopandie, Didy; Ardie, and Sintho Wahyuning
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 45 No. 1 (2017): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (593.318 KB) | DOI: 10.24831/jai.v45i1.13749

Abstract

The use of somatic embryo for in vitro selection program is very useful since the selected traits will be inherited in the progeny. This study was aimed to obtain somaclonal variants for drought tolerances of soybean genotypes from in vitro selection using polyethylene glycol (PEG). The experiments were set up in two factors with completely randomize design and each treatment was replicated ten times. Four soybean genotypes (Tanggamus, Anjasmoro, Yellow Biloxi, CG-22-10, and SP-10-4) were used in this study as first factor experiment. In vitro selection was in embryogenic callus level using media containing PEG (0, 5, 10, 15, and 20%) as second factor experiment was done to all genotypes. The results showed that after 3 months in the selection medium, SP-10-4 and Tanggamus genotypes showed higher percentage of fresh callus (surviving callus) and number of embryogenic callus, compared to Anjasmoro and Yellow biloxi. In contrast, CG-22-10 had the lowest number of fresh callus and number of embryogenic callus compared to other genotypes. PEG in high concentration decreased the percentage of fresh callus and number of embryogenic callus in all genotypes. Tanggamus was the only genotype that survived until cotyledonary-stage embryos after transferring in MS0 regeneration medium. Seven Tanggamus somatic embryos from PEG selection succesfully germinated and regenerated into plantlet as drought-tolerant somaclone candidates. Keywords: abiotic stress, embryogenic callus, Glycine max, somaclone
Keragaman Beberapa Aksesi Temu Hitam (Curcuma aeruginosa Roxb.) Berdasarkan Karakter Morfologi Setiadi, Adi; Khumaida, Nurul; Wahyuning Ardie, dan Sintho
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 45 No. 1 (2017): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (397.145 KB) | DOI: 10.24831/jai.v45i1.13773

Abstract

Curcuma aeruginosa Roxb. or black turmeric belongs to the family Zingiberaceae is one of the important medicinal plant that is widely distributed in Southeast Asia, including in Indonesia. This plant has been used by the people especially as raw material for medicine and cosmetics industries. However, the development of black turmeric is still constrained by the availability of germplasm collection and improved varieties. The objective of this study was to determine the vegetative morphological characters and phylogenetic relationship among 10 accessions of black turmeric and 3 accessions of genus Curcuma in Indonesia. Data was collected for 15 morphological quantitative characters of black turmeric at the Experimental Garden at Sukamantri IPB based on UPOV and PPVFRA descriptors. The result of principal component analysis has determined three principal components with the proportion of diversity 73.94%. Cluster analysis three clusters accession of black turmeric, namely cluster 1 consisted of accession Cianjur, Malang, Rimbo, and Kendal; cluster 2 consisted of accession Bogor, turmeric (Curcuma longa L.), java turmeric (Curcuma xanthorrhiza Roxb.), Liwa, Natar, white turmeric (Curcuma zedoaria Roscoe.); cluster 3 consisted of accession Cirebon, Kuningan 1, and Kuningan 2. Keywords: cluster, component analysis, germplasm, medicinal plant, phylogenetic
Evaluasi Hasil dan Kandungan Pati Mutan Ubi Kayu Hasil Iradiasi Sinar Gamma Generasi M1V4 Subekti, Isnani; Khumaida, Nurul; Ardie, Sintho Wahyuning; Syukur, dan Muhamad
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 46 No. 1 (2018): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (388.196 KB) | DOI: 10.24831/jai.v46i1.17610

Abstract

Cassava is one of the important starch producer crops. Although Indonesia ranks as the third largest cassava producer country, Indonesia still imports cassava starch to meet the domestic demand in food and non-food industries. Gamma ray irradiation has been implemented to generate cassava mutants in order to support development of superior cassava variety, especially high yield and high starch content, especially high yield and high starch content. The objectives of this research were to evaluate the yield potential and the starch content of gamma irradiated 40 putative cassava mutants at M1V4 generation. This research was arranged in randomized complete block design with three replications and conducted at Cikabayan Experimental Field, IPB, Bogor, from May 2016 to March 2017. The starch content was measured using gravimetric methods. The results showed that five mutants, G2142, G3151, G2141, G1143, and G3111, had higher tuber weight per plant (6-7 kg per plant) compared to the background ‘Gajah’ genotype (4.7 kg per plant). ‘G2112’ mutant genotype showed higher starch content (23.86%) compared to the background ‘Gajah’ genotype (17.65%). The specific gravity (SG) was positively correlated with starch content (r = 0.905), indicated that the higher the SG, the higher the starch content of cassava.Keywords: gravimetric, mutant, specific gravity (SG), yield
Optimasi Konsentrasi Asetosiringon dan Higromisin dalam Transformasi Genetik Padi Fatmawati dengan Perantaraan Agrobacterium tumefaciens Sisharmini, Atmitri; Purwoko, Bambang Sapta; Khumaida, Nurul; Trijatmiko, dan Kurniawan Rudi
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 46 No. 3 (2018): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (413.29 KB) | DOI: 10.24831/jai.v46i3.19445

Abstract

Protocols for genetic transformation of rice have been widely developed, however the protocols are not universal and inapplicable for all types of rice plants directly. Transformation protocol on rice cv. Fatmawati needs to be developed to generate transgenic lines. The present research was carried out to optimize genetic transformation protocol in rice cv. Fatmawati mediated by Agrobacterium tumefaciens harboring pCambia1301 construct using immature embryo as an explant. The experiment was arranged in a completely randomized design. Factors influencing efficiency of transformation, i.e., sensitivity of callus to hygromycin antibiotic, acetosyringone concentration used in cultivation medium, hygromycin concentration for transformant selection were optimized. The results showed that genetic transformation of rice cv. Fatmawati mediated by A. tumefaciens using immature embryos have been successfully carried out with several parameters. Addition of 100 µM acetosyringone in co-cultivation medium and 30 mg L-1 hygromycin for transformant callus selection were optimal for genetic transformation of rice cv. Fatmawati mediated by A. tumefaciens. Transformation efficiency was found to be 7.84% based on the lines carrying the hpt gene. This result would be a valuable reference in genetic transformation of rice cv. Fatmawati using target genes.Keywords: immature embryo, Oryza sativa, pCambia1301, transformation efficiency
Seleksi Simultan Karakter Daun Mengering dan Produktivitas pada Galur-galur Padi Wening, Rina Hapsari; Purwoko, Bambang Sapta; Suwarno, Willy Bayuardi; Rumanti, Indrastuti Apri; Khumaida, Nurul
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 47 No. 3 (2019): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (569.772 KB) | DOI: 10.24831/jai.v47i3.26076

Abstract

Drought is an important constraint for rice production in rainfed lowland and shallow freshwater swamp. The area often experiences drought stress at the generative stage of the plants. This study aimed at selecting adaptive lines to terminal drought and formulating a multiple regression model to estimate the productivity under drought stress conditions at the generative stage. The experiment was conducted in a greenhouse of the Indonesian Center for Rice Research, Subang, West Java, using an augmented design with five blocks. The genetic material used was ninety-nine lines and four checks varieties, namely Inpari 30, Limboto, Salumpikit, and IR 20. The model was formulated using stepwise regression analysis. Based on this study, ten lines were adapted to drought stress at the generative stage, namely B13983E-KA-12-2, B13926E-KA-13, B13507E-MR-19, B14366E-KY-50, B14366E-KY-37, IR86384- 46-3-1-B, BP20452e-PWK-0-SKI-1-1, BP20452e-PWK-0-SKI-2-4, BP20452e-PWK-0-SKI-3-3, and BP29790d-PWK-3 -SKI-1-5. The B13507E-MR-19 had the highest productivity (4.02 ton ha-1) under drought stress conditions. Yield under drought stress in the greenhouse could be predicted using a linear regression model involving plant height at early vegetative stage, plant height up to the panicle, tiller number at early vegetative stage, tiller number at late vegetative stage, tiller number at flowering, heading time, number of filled grain, and panicle exsertion length. This model was able to explain 75.92% of yield variation. Potential rice lines and the regression model obtained are expected to contribute to the development of rice varieties adaptive to drought. Keywords: drought tolerant, freshwater swamp, rainfed, regression model
Faktor-faktor yang Memengaruhi Produksi dan Efektivitas Panen pada Kakao Mulia Thifany, Ariny Jihan; Khumaida, Nurul; Santosa, Edi
Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Vol. 48 No. 2 (2020): Jurnal Agronomi Indonesia
Publisher : Indonesia Society of Agronomy (PERAGI) and Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (510.54 KB) | DOI: 10.24831/jai.v48i2.30565

Abstract

Low productivity of cocoa (Theobroma cacao L.) in Indonesia is caused by various factors such as improper harvesting practice. The research studied growth, development, and distribution of pod on two edel cocoa clones (DR 2 and DRC 16) and to evaluate factors affecting production and harvesting effectivity. The study was carried out at cocoa farm located at Renteng Plantation, Jember, East Java, Indonesia in January-May 2019. Pod growth, distribution, and disease incidents were evaluated on the stem 0-200 cm from soil level. The results showed that harvested pod met 73.51% of the standard quality. DR 2 and DRC 16 matured about 21-24 and 19-22 weeks after anthesis, respectively. Pods distributed predominantly at 151-200 cm above soil surface, and number of pod increased from lower to higher stem. Cocoa production was affected by clone, fruit position on the stem height, pest and disease infections, and harvester’s age and their height. In order to increase cocoa production, it is important to increase harvesting effectivity by managing fruit position such as maintaining tree height to fit with harvester’s age and height.
RAPD ANALYSIS TO DETECT SOMACLONAL VARIATION OF PINEAPPLE IN VITRO CULTURES DURING MICROPROPAGATION Roostika, Ika; Khumaida, Nurul; Ardie, Sintho Wahyuning
BIOTROPIA Vol. 22 No. 2 (2015): BIOTROPIA Vol. 22 No. 2 December 2015
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (21.504 KB) | DOI: 10.11598/btb.2015.22.2.422

Abstract

Plant off-type formation has become a concern in pineapple micropropagation, and reliable methods are required to detect and minimize this problem. This study was conducted to confirm the occurrence of somaclonal variation during the micropropagation of pineapple clone Simadu. The effects of culture period (long vs. short duration) and regeneration methods (direct organogenesis, indirect organogenesis, and somatic embryogenesis) were evaluated to determine their contribution to somaclonal variation. RAPD analysis using ten primers was performed to confirm genetic variation. The results showed that RAPD assays could be applied for early detection of somaclonal variation in pineapple, with OPA primers performing better than OPJ primers. Phenotypic variation observed in four-year-old field-grown pineapple plants and plantlets was associated with genetic variation. The findings demonstrated that the long culture period was the main factor contributing to somaclonal variation, while regeneration method and plant growth regulators also played a role in inducing genetic changes. Newly initiated cultures showed a higher level of genetic similarity. Therefore, applying an appropriate micropropagation strategy is necessary to minimize plant off-types. It is recommended to avoid using long-term cultures as mother stock and to apply direct organogenesis rather than indirect organogenesis or somatic embryogenesis for pineapple micropropagation.
INTRASPECIFIC VARIATION ON EARLY GROWTH OF Neolamarckia cadamba Miq. IN PROVENANCE–PROGENY TESTS IN WEST JAVA PROVINCE, INDONESIA Sudrajat, Dede J; Nurhasybi, Nurhasybi; Siregar, Iskandar Z; Siregar, Ulfah J; Mansur, Irdika; Khumaida, Nurul
BIOTROPIA Vol. 23 No. 1 (2016): BIOTROPIA Vol. 23 No. 1 June 2016
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1301.149 KB) | DOI: 10.11598/btb.2016.23.1.439

Abstract

Genetic parameters for early growth of Neolamarckia cadamba, an indigenous species with potential as a source of timber wood, were estimated in open-pollinated provenance–progeny tests conducted at two sites in West Java Province, Indonesia. The experiment was arranged in a randomized complete block design with 12 provenances, 105 families, and five replications in four-tree row plots. Total height and root collar diameter were measured at 18 months of age. Significant differences among provenances and among families within provenances were observed for height and collar diameter at all sites, except for collar diameter among provenances at the Parungpanjang site. In general, the Garut (GSJ) provenance performed better than the Kualakencana (KKP) and Nusa Kambangan (NKJ) provenances at both sites. Evaluation of variance components at the two sites showed that the provenance effects (ranging from 0.5 to 1.7%) contributed more to the total variance than family-within-provenance effects (ranging from 0.4 to 0.6%). Genetic correlations between height and collar diameter were weak to moderate. Heritability estimates were low for all traits at Limbangan, whereas they were moderate at Parungpanjang. Estimated genetic gain for height and diameter based on proportional family selection of 0.30 was 0.13 and 0.18 at Limbangan, and 0.31 and 0.16 at Parungpanjang, respectively. Continued heritability measurement is required to obtain stable values. Stable heritability combined with family selection and within-family selection will improve genetic gain.
Co-Authors , Kisman , Sukendah , Witjaksono . Wusnah A. Sofwan Achmad . ADI SETIADI Agus Purwito Agustina, Ferra Anggita AHMAD JUNAEDI Ahmad Rifqi Fauzi Ali Djamhuri Almia Permata Putri Amril Aman Andi Dahliaty Aniversari Apriana Aniversari Apriana Aniversari Apriana Ardana, I. N. Kutha Ardie, and Sintho Wahyuning Ardie, dan Sintho Wahyuning Aris Purwanto Arrin Rosmala Atmitri Sisharmini Atmitri Sisharmini Atmitri Sisharmini Bambang S. Purwoko Bambang Sapta Purwoko Bhayu Hartanti Bintang, dan Maria Buang Abdullah Cakranegara, Pandu Adi Cucu Sukmana, Cucu Danar Dono Dede J Sudrajat Dede J. Sudrajat Dede J. Sudrajat Dede J. Sudrajat Dede Jajat Sudrajat Dede Kurniadi DEWI SARTIAMI Dewi Sukma Dewi Sukma Didy Sopandie Diny Dinarti Dwi Pratiwi Edi Santosa Efendi, Darda Emmy Darmawati Enny Sudarmonowati Evi Fitriany Faqih Udin Firdausya, Andina Fabrini Freddy Tua Musa Panggabean Gustaaf A Wattimena, Gustaaf A Gustaaf A. Wattimena Gustaaf Adolf Wattimena Gustaaf Adolf Wattimena HADIPOENTYANTI, ENDANG Hartati, RR. Sri Heldiyanti, Rina Hendri Hermawan Adinugraha HUSNI, ALI I Ismayani I MADE ARTIKA Ida Duma Riris Ika Mariska Ika Mariska Ika Mariska Ika Mariska Ika Mariska Ika Mariska Ika Roostika Ika Roostika Ika Roostika Indrastuti Apri Rumanti Irdika Mansur Irfan MARTIANSYAH Iskandar Z. Siregar ISKANDAR ZULKARNAEN SIREGAR Iswari S Dewi Iswari S. Dewi Iswari Saraswati Dewi Jalaluddin Jalaluddin Kartika Ning Tyas Kartika Ning Tyas Kasutjianingati . Kisman Kisman Kurniawan R. Trijatmiko Kurniawan Rudi Trijatmiko Kurniawan Rudi Trijatmiko La Muhuria Lefin Kafindra Lestari, Risza Putri Lisnawaty Simatupang Lola Adres Yanti Lukman Hakim M Murtadha M. Amir M. Asyabul Zikki Maemonah, Maemonah MARIA BINTANG Marini Damanik Mariska, Ika Maryati Evivani Doloksaribu MEYNARTI SARI DEWI IBRAHIM MEYNARTI SARI DEWI IBRAHIM Muaz Adbdul Karim Muaz Adbdul Karim Muhamad Syukur Muhammad Irfan Habibi MUHAMMAD SYUKUR Mulyatno, Mulyatno Munif Ghulamahdi N. Sri i Hartati Nafilawati wa ode Nata Suharta Natalini Nova Kristina Natalini Nova Kristina Nataniel Tandirogang Nugroho, Candra Catur Nura ,, Nura Nurbaiti Nurbaiti Nurhasybi Nurhasybi Nurul Fatimah Nurul Fauziah O K Sofyan OTIH ROSTIANA OTIH ROSTIANA Pienyani Rosawanti Rahmi Henda Yani Rasyad, M. Ashadi Reny Herawati Rina Hapsari Wening, Rina Hapsari Rinda Cahyana Riyanti Catrina H S Riza Arief PUTRANTO Rizkiannur Putri, Amalia Roedhy Poerwanto Rossa Yunita Rossa Yunita Rossa Yunita Rozanna Dewi Ryan Budi Setiawan Sadewi Maharani Sadewi Maharani, Sadewi Saepudin, Adam Safitri Safitri Saronom S ilaban Sarwono Hardjowigeno Shafwan Fahmi Silawati, Tutisiana Silawati Tutisiana Sintho Wahyuning Ardie Siregar, Ulfah J Siswati, Leni Siti Aisyah Siti Kurniawati Slamet Budijanto Slamet Susanto Sobir Sobir Sri Enny Triwidiastuti Sri Helianty Sry Rahmadani Subekti, Isnani Sudarsono Sudarsono Sudarsono Suhesti, Sri Sukma, Dewi Sulastri Sulastri Sulhatun Sulhatun SUPRIADI SUPRIADI Suryati Suryati Suryo Wiyono Sutalaksana, Iftikar Z Sutrisno Mardjan Sutrisno, Sutrisno Suyanti Kasimin Syamsul Bahri Syamsul Bahri Tarigan, Asmara Iriani Tengku Mia Rahmiati Teti Arabia Thifany, Ariny Jihan Tri Handayani Tri Joko Santoso Tri Lestari Mardiningsih Tri Lestari Mardiningsih, Tri Lestari Trijatmiko, dan Kurniawan Rudi Trikoesoemaningtyas Trismi Ristyowati Ulfah J. Siregar Ulfah Juniarti Siregar Ummu Kalsum Wahyuning Ardie, dan Sintho Waizul Fahri Purba Waras Nurcholis Warid Warid Wattimena, and Gustaaf Adolf WATTIMENA, G. A. Wening Enggarini Wening Enggarini Widiatmaka Widodo , Widowati, Sartika Widya Hartati, Widya Wijayanti, Mustika Eka Willy Bayuardi Suwarno Yudiansyah Yudiansyah Yulia, Endah Yulia Yundari, Yundari Yunita, Rossa Zuli Nuraeni