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All Journal Biospecies Kolaboratif Bioeducation Journal Penelitian Pendidikan Biosfer: Jurnal Tadris Biologi Medical Journal of Indonesia BIOTIK: Jurnal Ilmiah Biologi Teknologi dan Kependidikan QUANTUM: Jurnal Inovasi Pendidikan Sains BIOMA : Jurnal Biologi Makassar Jurnal Penelitian Pendidikan IPA (JPPIPA) Jurnal Biologi Tropis Jurnal Basicedu Jurnal Ilmu Kedokteran dan Kesehatan Biota Atrium Pendidikan Biologi Serambi Biologi Pelita Eksakta Journal of Stem Cell Research and Tissue Engineering Sainstek : Jurnal Sains dan Teknologi Jurnal Biogenerasi Jurnal Ekologi, Masyarakat dan Sains FORUM PAEDAGOGIK Jurnal Biosense BiosciED: Journal of Biological Science and Education Halal Research Journal TROPICAL GENETICS Jurnal Vokasi Mekanika Al Jahiz: Journal of Biology Education Research Jurnal Basicedu Tropical Genetics Jurnal Serambi Biologi Jurnal Pendidikan IPA Indonesia
Yuni Ahda
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Religion Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Civil Engineering, Building, Construction & Architecture Computer Science & IT Decision Sciences, Operations Research & Management Education Engineering Environmental Science Health Professions Immunology & microbiology Languange, Linguistic, Communication & Media Materials Science & Nanotechnology Mathematics Mechanical Engineering Medicine & Pharmacology Physics Public Health Social Sciences Veterinary Other

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Journal : Jurnal Biologi Tropis

 1 
Primer Design of EDNRB Gene Exon 5 and PCR Optimization for Gene Mutation Analysis in Hirschsprung's Disease Anggun, Septiasri; Ahda, Yuni
Jurnal Biologi Tropis Vol. 25 No. 2 (2025): April-Juni
Publisher : Biology Education Study Program, Faculty of Teacher Training and Education, University of Mataram, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29303/jbt.v25i2.8971

Abstract

HD disease is a common cause of neonatal intestinal obstruction. HD disease is a congenital disorder of the colon characterized by the absence of parasympathetic ganglion cells in the sub mucosal plexus of Meissneri and the mienterikus plexus of Auerbachi. Objective: To design specific primers for amplification of exon 5 in EDNRB gene and test the specificity in silico. To determine the optimum PCR conditions for amplification of exon 5 in EDNRB gene. Methods This type of research is descriptive. The purpose of descriptive research is to provide an overview or description of the EDNRB exon 5 gene primer design and PCR optimization. Electrophoresis results showed the temperature of 56 oC is the right temperature characterized by a single band and looks the thickest and brightest with the appropriate amplicons size of 367 bp, The results for the EDNRB gene primer exon 5 obtained the optimum concentration of 0.8 µM. This is characterized by DNA bands that look clear and thickest. The specific sequence of forward primer is 5'ATTTCA GAGACG GGAAG TGG3' reverse primer is 5'GGCACT CACTCATCATCTTG 3' which produces amplicons with a length of 367 bp. The optimum annealing temperature is 56 oC and the optimum primer concentration is 0.8 µM.  
Polyploid Induction of Long Bean (Vigna sinensis) Using Colchicine with Different Concentrations Fitri, Anisa; Afandi, Echa Azkia; Anggun, Septiasri; Yuni Ahda
Jurnal Biologi Tropis Vol. 25 No. 3 (2025): Juli-September
Publisher : Biology Education Study Program, Faculty of Teacher Training and Education, University of Mataram, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29303/jbt.v25i3.9063

Abstract

Long bean (Vigna sinensis) is a plant from the Leguminosae family, which has an important role in the Indonesian economy because it is widely consumed as food. The purpose of this research is to utilize mutation technology in supporting plant breeding to produce superior long bean varieties. The research method carried out was a non-factorial Randomized Group Design (RAK), namely soaking the seeds of long bean plants with colchicine to see the effect of colchicine treatment on chromosomal mutations in long bean plants. The results showed significant differences between colchicine concentrations of 0.02% and 0.03%. At a concentration of 0.02%, the cell nucleus appeared solid red and in the center of the cell, but the number and shape of chromosomes were not clearly visible. This concentration is not optimal for inducing polyploidy. Meanwhile, at a concentration of 0.03%, the chromosomes were more clearly visible than the previous concentration.
Literature Review: The Role of RET Gene Mutations in The Emergence of Hirschsprung Disease Azalia, Salsa Novela; Ahda, Yuni
Jurnal Biologi Tropis Vol. 24 No. 2 (2024): April - Juni
Publisher : Biology Education Study Program, Faculty of Teacher Training and Education, University of Mataram, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29303/jbt.v24i2.6740

Abstract

Hirschsprung’s disease is a congenital condition characterized by a failure of nerve function along the gastrointestinal (GI) tract, resulting in the absence of enteric ganglia in the most distal segment of the colon. Although the prevalence rate is 1:5000 babies born, Hirschsprung’s disease can have a significant impact on patients, especially in terms of quality of life. One of the main genetic factors often associated with the etiopathogenesis of Hirschsprung’s disease is the RET gene. This study aims to provide scientific insight into advances in the understanding of genetic variants associated with RET gene mutations and their role in causing Hirschsprung disease. The research design used was literature review, articles were collected based on sources derived from Google Scholar, PubMed, and EMBASE which included national and international journals published in the last 10 years. Based on the articles collected, it was found that the RET gene is essential for the growth, migration, and maturation of precursor cells into functional neurons. Mutations in the RET gene can interfere with the normal formation and function of nerve cells, leading to symptoms typical of Hirschsprung’s disease.
Co-Authors Abdul Rasak Abdul Razak Abdul Razak Achyar, Afifatul Afandi, Echa Azkia Afriandi, Muhammad Agusminarti, Agusminarti Ahmad Fauzan Ahmad Saleh Akbar, Imam Qodri Ambiyar, Ambiyar Ananda, Azwir Anggun, Septiasri Angreni, Siska Anisha S Anni Faridah Arfianti, Fina Aripin, Nurul Atifah, Yusni Ayesa, Putri Ayu, Duni Azalia, Salsa Novela Azeli, Saskia Putri Azwir Anhar Azzahra, Yolanda Belia Putri BR Tarigan, Siti Nadiah Zahra D. N. Putri, Dini Daniel Happy Putra Darmanella Dian Eka Wati Darussyamsu, Rahmawati Dezi Handayani Diana Lyrawati Diana Susanti Dualom, Siti Dwi Hilda Putri Efdillah, Syilvia Eriza, Deni Septia Evi Suryawati Fadhil Ramadhan, Bintang FAJRINA, SUCI Fatni Mufit Ferdyan, Rhavy Festiyed Festiyed Fidela, Wita Fitri Arsih Fitri, Anisa Fitri, Lel Fitria, Davina Fitria, Yanti Gunawan, Revi Gina Haryanto Haryanto Hastutin, Sri Yuni Hayu, Elvira Heffi Alberida Herisanti, Dini Ilahi, Threesia Anugrah Indra Hartanto Iqra, Kuntum Nurul IRDAWATI Irdes Hidayana Siregar Jörg Gromoll Junil Adri K. Sari, Jelly Keiko Kasy Billah Keiko Kasy Billah Khairunnisa Lasmana, Oria Linda Advinda Linda Wati Lufri Lufri Marcloryne Agnesia Masyitoh Masyitoh Maulina, Adinda Rizky Meisya, Divia Yuda Miftahul Jannah Monica, Della Trya Muhammad Ikbal Mulia, Nanta Muslima, Risa Ukhti Mutia Dwi Herakasih Mutia, Ravena Najib Rahman. G Neng Sholihat Nining Nuraida Nukman Moeloek Nurbaiti, Desy Nurpatri, Yeni NURUL HIDAYAH P. Ningky, Yiyin Pratama, Sandi Fransisco Purnomo Soeharso Rahma Amelia, Anisha Chahya Rahmadhani Fitri Rahmawati Darussyamsu Ramadhan Sumarmin Ratih Komala Dewi Ratna Nila Sari Regina Rinti Mutiara Sari Rona Taula Sari, Rona Taula safitri, fira Sagurung, Mariance Dartiani Salsabil, Velina Samsudin, Syakirah Santosa, Tomi Apra Sari, Rinti Mutiara Sefina, Nadia Sepriyani, Eria Marina Septelia I. Wanandi Siagian, Gunaria Siregar, Titik Ermila Sri Suciati Ningsih Syafrilianto, Syafrilianto Syahrastani, Syahrastani Syamsurizal Syari, Elsy Melia T. Berlian Taufiqa, Zuhrah Valofi, Nagra Aulia Vivi Fitriani Wahyuni, Nur Anisa Wahyuni, Sisri Winda Ayu Fietri Yerimades, Yerimades Yerimadesi Yerimadesi Yerimadesi Yuda Meisya, Divia Yusi Febriani Zalni, Tita Yunia Zega, Dwi Junita Zhafira