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Molecular Identification and Phylogenetic Tree Reconstruction of Marine Fish Species from the Fishing Port of Kutaradja, Banda Aceh Sapto Andriyono; Adrian Damora; Hyun-Woo Kim
Journal of Tropical Biodiversity and Biotechnology Vol 7, No 3 (2022): December
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.71955

The enormous potential of marine resources possessed by Banda Aceh Province is expected to be utilised optimally. Accuracy in marine fish resource identification is a critical requirement to support their utilisation and preservation in Banda Aceh Province. In this study, a molecular identification approach was carried out in addition to conducting a morphological identification, commonly used by several scientists. The results were 47 COI sequences generated representing 33 genera, 19 families, and five orders. From the resulting COI partial sequences, there is one potential haplotype from the Scombridae family (Auxis thazard), two potential haplotypes from the Carangidae family (Elagatis bipinnulata and Decapterus macarellus), and two potential haplotypes from the Serranidae family (Variola albimarginata and Cephalopholis sonnerati). This study is essential for fisheries biological studies and other fisheries studies to support the sustainable utilisation of marine fisheries potential in Banda Aceh.

Molecular Identification of Snapper (Perciformes: Lutjanidae) Landed at Pondokdadap Fishing Port of Sendang Biru, Malang, Indonesia Sapto Andriyono; Novian Aji Pradana; Laksmi Sulmartiwi; Andi Aliah Hidayani; Md. Jobaidul Alam; Adrian Damora; Ahasan Habib
ILMU KELAUTAN: Indonesian Journal of Marine Sciences Vol 27, No 4 (2022): Ilmu Kelautan
Publisher : Marine Science Department Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/ik.ijms.27.4.307-314

Snapper is a type of demersal marine fish from the Lutjanidae family. The Lutjanidae family spread throughout the world and currently has 123 species in 21 genera, one of which is the Lutjanus genus (Miller and Thomas, 2007). To this day, the records of capture fisheries production data for snapper in Malang are still very limited to certain types. Morphological identification that has been carried out so far is still challenging to obtain accurate results because of the many similarities between the observed species or the loss of characteristics. Therefore, molecular identification is necessary to determine the types of snappers in this area and their conservation status. This study aims to determine the types of snappers using a molecular approach by Cytochrome Oxidase subunit I (COI) gene marker. Phylogenetic tree reconstruction and genetic distance calculations were performed using Mega X software through the neighbour-joining (NJ) algorithm. The results of the identification snapper based on a molecular approach with DNA barcoding revealed that the four snapper samples were L. gibbus, L. rufolineatus, L. bengalensis, and L. erythropterus. Based on the results of the compilation of the phylogenetic tree, it can be seen that the L. bengalensis sample is closely related to L. rufolineatus while L. gibbus, and L. erythropterus each form a separate clade from the two previous Lutjanus species. Based on their conservation status at the IUCN, the four species of snapper found are in the Least Concern category.

THE APPLICATION OF YEAST AND LACTIC ACID BACTERIA IMPROVE GROWTH AND INTESTINAL STRUCTURE OF TIGER SHRIMP LARVAE Penaeus monodon Fab. Muhammadar Abdullah Abbas; Nadhira Alamanda; Ibnu Sahidir; Adrian Damora; Cut Nanda Devira; Dedi Fazriansyah Putra
Jurnal Kedokteran Hewan Vol 17, No 1 (2023): March
Publisher : Universitas Syiah Kuala

This study aims to investigate the effect of the different concentration of RABAL (yeast and lactic acid bacteria) probiotics on the survival, feed conversion, growth and intestinal cells changes of tiger shrimp Penaeus monodon Fab. larvae. This study used a Completely Randomized Design (CRD) method with 4 treatments and 4 replications. Tiger shrimp with average size of 0.02 g was randomly stocked in each container containing RABAL with concentration of 0 ppm (A/control), 75 ppm (B), 150 ppm (C), and 225 ppm (D) with frequency once a day for 30 days. Data were analysed using one way ANOVA. The result showed that the application of RABAL with different doses into the shrimp culture media significantly influences (P0.05) the growth and food conversion ratio of tiger shrimp feed but did not significantly affect (P 0.05) on the survival rate. The value of water quality parameters in this study were still at normal levels for tiger shrimp rearing. As conclusion, the application of probiotics RABAL with different concentrations have positive effect on the absolute weight, absolute length, specific growth rate, feed conversion ratio and intestinal villi surface area of tiger shrimp larvae, without adverse effect on the survival rate of tiger shrimp seed.

Phylogeographic Insights of Five Co-Habiting Grouper Species in The Indo-Malaya Archipelago Nur Fadli; Adrian Damora; Zainal A. Muchlisin; Irma Dewiyanti; Mutia Ramadhaniaty; Nanda Muhammad Razi; Jamsari Amirul Firdaus Jamaluddin; Edison D. Macusi; Mohd Nor Siti-Azizah
HAYATI Journal of Biosciences Vol. 30 No. 4 (2023): July 2023
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.30.4.743-756

Understanding the patterns of genetic diversity of species and precise stock identification are important in fisheries conservation management. However, studies on genetic diversity, connectivity, population structure, and gene flow of groupers within the Indo-Malaya Archipelago (IMA) waters are limited. The objective of the present study was to examine the phylogeographic patterns of the family Epinephelidae in IMA waters based on a parallel study of five selected species utilizing the mitochondrial COI. The grouper species were: areolate grouper (Epinephelus areolatus), blacktip grouper (Epinephelus fasciatus), six-bar grouper (Epinephelus sexfasciatus), blue-lined hind (Cephalopholis formosa), and white-edged lyretail (Variola albimarginata). Specimens were obtained from fish landing sites and fish markets from 23 locations throughout the IMA waters. This study showed genetic structuring for two species (Epinephelus areolatus and Variola albimarginata) but genetic homogeneity for the other three investigated species across IMA. Various geological and demographic histories, local and regional oceanographic features, and biological characteristics are hypothesized to shape the present genetic pattern of each species across the IMA waters. The establishment of effective international cooperation is encouraged to manage grouper species stocks in this region.

The application of integrated multi-trophic aquaculture (IMTA) using floating net cages on Tilapia fish with native fish (Peres, Lemeduk, and Depik) Nurfadillah Nurfadillah; Iwan Hasri; Muhammad Reza Purnama; Adrian Damora; Siska Mellisa
Depik Vol 10, No 3 (2021): December 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Environmental problems due to aquaculture occur along with the increase in aquaculture production. IMTA is one system used as a solution in dealing with environmental problems. The objective of this study was to analyze the growth performance, survival rate, and production of the main commodity (tilapia) and the supporting commodities (Peres, Lemeduk, and Depik) which are applied through the application of integrated multi-trophic aquaculture (IMTA) using floating net cages. This research was conducted at the Lukup Badak Fish Seed Center, Central Aceh from July to August 2020. The experimental design used was a completely randomized design (CRD) with 4 treatments and 3 replications, namely: A (tilapia), B (tilapia and peres), C (tilapia and lemeduk), and D (tilapia and depik). ANOVA test results showed that the IMTA system had a significant effect on absolute length growth, absolute weight growth, specific growth rate (SGR), survival rate, and biomass production of tilapia (P0.05). The results showed that maintenance for 42 days produced the highest value in treatment B with the increase in absolute length growth (4.26cm±0.24); absolute weight growth (5.47g±0.45), specific daily growth rate (2.28%/day±0.13) and the highest tilapia biomass production (480g/0.5m2±19.25). The highest survival rate was found in treatment C (82.42%±2.28). It was concluded that the treatment using the IMTA system was better than without the IMTA system.Keywords:IMTAWater qualityGrowth performanceTrophic interactionBiomass production

Diversity of commercially important grouper (Family: Epinephelidae) in Simeulue and Banyak Islands, Aceh, Indonesia Nanda Muhammad Razi; Zainal A. Muchlisin; Mutia Ramadhaniaty; Adrian Damora; Firman M. Nur; Mohd Nor Siti-Azizah; Nur Fadli
Depik Vol 11, No 1 (2022): April 2022
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Grouper is one of the economically important fish groups in the Simeulue and Banyak Islands. However, data on the diversity of the grouper in this region is still limited. This study aimed to inventory the commercially important grouper in Simeulue and Banyak Islands. Sampling was carried out in April - September 2021 at sixteen locations around Simeulue and Banyak Islands. In total, 20 species of commercial grouper consisting of 6 genera were recorded during the study. Epinephelus was the most dominant genus with ten species, followed by Cephalopholis with four species. In addition, seventeen species (85%) were included in the Least Concern (LC), two species (10%) were categorized as Vulnerable (VU), and one species (5%) was Data Deficient (DD). This study provides a database of commercially important grouper in Simeulue and Banyak Islands that can be used to manage the fish group.

Grouper DNA barcoding studies in Indonesia: A short review Nanda Muhammad Razi; Zainal A. Muchlisin; Siti Maulida; Mutia Ramadhaniaty; Firman M. Nur; Adrian Damora; Sumarni Laila Buang Manalu; Nur Fadli
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Indonesia is recognized as one of the territories that have the highest reef fish biodiversity in the world. One of the commercially valuable fish in this area is the groupers (locally name "kerapu"). At least 76 grouper species have been reported in Indonesian waters, with three species were categorized into "vulnerable", five species "Data Deficient", and 68 species under the "Least Concern" category based on IUCN classification. The increasing exploitations rate had been reported caused the grouper stocks in Indonesia to decrease and threatened extinction. However, only limited scientific data is available regarding the grouper in Indonesia, including their identification. In most fish landing sites across Indonesia, the groupers are morphologically identified and recorded as "kerapu" to replace their scientific species names. Accurate species identification is essential in designing appropriate and sustainable management of fisheries resources. One of the tools that have been used in fish identification is DNA barcoding. In the last two decades, this molecular method has been applied to identify many fish groups globally, including grouper fish. This study reviewed the DNA barcoding approach in grouper identification in Indonesia based on the available literature.Keywords:DNA barcodingGrouperMolecular TaxonomyFisheriesIndonesia

Effect of transplantation media on Pocillopora coral growth rate at TWAL Pulau Weh Chitra Octavina; Maria Ulfah; Adrian Damora; Zulkarnain Jalil; Nanda Muhammad Razi; Muhammad Agustiar; Puad Batari Harahap; Nurul Najmi; Samsul Bahri; Munandar Munandar; Shan-Yin Vanson Liu
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Coral reef ecosystems have a vital role in waters so that damage to coral reef ecosystems can reduce ecological and socio-economic functions that can impact environmental imbalances, such as reef fish and benthic communities. This study aims to determine the effect of transplant media on the growth rate of the genus Pocillopora coral and see whether it has a significant effect on the rate of coral growth in TWAL Pulau Weh, Aceh Province. The method used is a purposive sampling method in determining stations, analysis using the ImageJ 1.52 application. The results showed that the effect of transplant media on the growth rate of Pocillopora corals were significant differences between structures given an electric current and those not given an electric current with a 95% confidence interval. The average growth value of Pocillopora corals given an electric current is 25.06 mm/month. While the Pocillopora corals that were not given an electric current average growth value was 16.50 mm/month.Keywords:Coral reefCoral transplantElectrical stimulationPocilloporaImagej

Effect of transplantation media on Pocillopora coral growth rate at TWAL Pulau Weh Chitra Octavina; Maria Ulfah; Adrian Damora; Zulkarnain Jalil; Nanda Muhammad Razi; Muhammad Agustiar; Puad Batari Harahap; Nurul Najmi; Samsul Bahri; Munandar Munandar; Shan-Yin Vanson Liu
Depik Vol 10, No 2 (2021): August 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.10.2.19222

Coral reef ecosystems have a vital role in waters so that damage to coral reef ecosystems can reduce ecological and socio-economic functions that can impact environmental imbalances, such as reef fish and benthic communities. This study aims to determine the effect of transplant media on the growth rate of the genus Pocillopora coral and see whether it has a significant effect on the rate of coral growth in TWAL Pulau Weh, Aceh Province. The method used is a purposive sampling method in determining stations, analysis using the ImageJ 1.52 application. The results showed that the effect of transplant media on the growth rate of Pocillopora corals were significant differences between structures given an electric current and those not given an electric current with a 95% confidence interval. The average growth value of Pocillopora corals given an electric current is 25.06 mm/month. While the Pocillopora corals that were not given an electric current average growth value was 16.50 mm/month.Keywords:Coral reefCoral transplantElectrical stimulationPocilloporaImagej

The application of integrated multi-trophic aquaculture (IMTA) using floating net cages on Tilapia fish with native fish (Peres, Lemeduk, and Depik) Nurfadillah Nurfadillah; Iwan Hasri; Muhammad Reza Purnama; Adrian Damora; Siska Mellisa
Depik Vol 10, No 3 (2021): December 2021
Publisher : Faculty of Marine and Fisheries, Universitas Syiah Kuala

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13170/depik.10.3.22465

Environmental problems due to aquaculture occur along with the increase in aquaculture production. IMTA is one system used as a solution in dealing with environmental problems. The objective of this study was to analyze the growth performance, survival rate, and production of the main commodity (tilapia) and the supporting commodities (Peres, Lemeduk, and Depik) which are applied through the application of integrated multi-trophic aquaculture (IMTA) using floating net cages. This research was conducted at the Lukup Badak Fish Seed Center, Central Aceh from July to August 2020. The experimental design used was a completely randomized design (CRD) with 4 treatments and 3 replications, namely: A (tilapia), B (tilapia and peres), C (tilapia and lemeduk), and D (tilapia and depik). ANOVA test results showed that the IMTA system had a significant effect on absolute length growth, absolute weight growth, specific growth rate (SGR), survival rate, and biomass production of tilapia (P0.05). The results showed that maintenance for 42 days produced the highest value in treatment B with the increase in absolute length growth (4.26cm±0.24); absolute weight growth (5.47g±0.45), specific daily growth rate (2.28%/day±0.13) and the highest tilapia biomass production (480g/0.5m2±19.25). The highest survival rate was found in treatment C (82.42%±2.28). It was concluded that the treatment using the IMTA system was better than without the IMTA system.Keywords:IMTAWater qualityGrowth performanceTrophic interactionBiomass production

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