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Journal : Biotropika

Genetic diversity of Springtails (Collembola Subclass) Based on Cytochrome oxidase Subunit I (COI) Genes in Malang Hermawan, Idris; Amin, Mohamad; Suhadi, Suhadi
Biotropika: Journal of Tropical Biology Vol. 10 No. 1 (2022)
Publisher : Universitas Brawijaya

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21776/ub.biotropika.2022.010.01.09

Abstract

The springtails belongs to the Collembola subclass of the insect class. Springtails is a mesofauna insect that acts as a detritivore and bio-indicator in ecosystem. Genetic diversity is influenced by the total amount of genetic variation present in the genes coding for a species or organism. COI gene is a gene that is useful as a genetic marker for mitochondrial DNA. The genetic diversity of springtails based on mtDNA COI gene sequences is not widely known in Indonesia. Based on this, this study aims to reveal the genetic diversity of springtails in Malang. This research was conducted by 3 locations in Malang (Cangar, Bedengan and Tambakasri). Measurements of the microclimate (humidity and air temperature) and altitude measurements were carried out at springtails sampling site, then carried out the DNA isolation process from the springtails samples obtained, the COI amplification process and sequencing were carried out. After obtaining the sequence data, genetic diversity analysis and polymorphism analysis were carried out. The results of this study were the target genes amplified from all samples of spring tails with DNA fragments along 677-683 bp. The sample of springtails had a genetic identity match with Homidia socia Denis and Homidia cingula Börner based on the BLAST analysis, results of genetic diversity analysis showed that the samples tested had high genetic diversity, composition of nucleotide bases A/T was 60,8%, genetic variation in the form of transition substitution (87 sites) and transversion (55 sites), and the results of polymorphism analysis showed the value of 0,18201 nucleotide diversity, number of segregation was 162 sites and sequences conservation was 0,744.
Co-Authors Ade Dwi Sasanti Ade Irawan Afriansyah, Azmi Agung Pambudiono, Agung Akbar, Syaeful Aldila Din Pangawikan Aldya, Riantina Fitra Ali Abrar, Ali Ali Djamhuri Aloysius Duran Corebima Andini, Andini Anhar Diansyah Ardini Pangastuti, Ardini Arwin Astara, Nurcheni Betty Lukiati Carli Junicef Vratama Dade Jubaedah Dade Jubaedah Dade Jubaedah Dade Jubaedah Danang Yonarta DEDI JUSADI Desi Ariyani, Desi Devi Craselly Sihombing Dina Maulina Dominggus Rumahlatu Edo Saputra Endang Suarsini Enromauli Pangaribuan Ferdinand Hukama Taqwa Hasminar Rachman Fidiastuti, Hasminar Rachman Hendry, Yuslan Idris Hermawan, Idris Hernawati, Diana Ing Mokoginta Ismalia, Nova Jimmy Rifanji Kartika Juliana, Kartika Kekey Zakaria Kukuh Jaya Langgeng Priyanto, Langgeng Lathifah, Anis Samrotul Lestari, Sri Rarayu Lili Suryati M Aiman Ziyad M Syaifudin M. Indra Wahyu Pratama Madyasta Anggana Rarassari Madyasta Anggana Rarassari Madyasta Anggana Rarassari Madyasta Anggana Rarassari Maftuchah, M Makatita, Muhajir Marini Wijayanti Marsi Marsi Marsi Marsi Marsi Mimien Henie Irawati Mirna Fitrani Mirna Fitrani MOCHAMAD SYAIFUDIN Mochamad Syaifudin, Mochamad Mohammad Wildan Habibi, Mohammad Wildan Muhamad Khoirul Anwar, Muhamad Khoirul Muhammad Amin Muhammad Aulia Amri Mulyani, Yenni Sri Muslim Muslim Muslim Ningrum, Anilda Satya Nurcheni Astara Paundara, Fajar Poppy Rahmatika Primandiri Putri Purnama Sari, Alvina Rahmawati D Rahyu Permata Sari Ramli Ramli Rarassari, Madyasta Anggana Reni Istiningrum, Reni Retno Cahya Mukti Ria octaviani Rinda Julita Pahlevie Rismoni, Indah Riswandi, Agung Ritia Rahmawati, Ritia Rizka Elan Fadilah, Rizka Elan Rizky Marli Antika Rojikin, Setiyo Sari, Melia Intan Sefti Heza Dwinanti Sefti Heza Dwinanti, Sefti Heza Septimesy, Annisa Siti Masreah Bernas Siti Suharyatun, Siti Siti Zubaidah Soselisa, Ch Sri Endah Indriwati Sri Indah Indriwati, Sri Indah Sri Waluyo Suhadi Suhadi Surijadi, Herman Suriyanti, Su Nyun Pau Sutiman B. Sumitro Syahruddin Syahruddin Tanbiyaskur Tanbiyaskur Tanbiyaskur Tanbiyaskur Tanbiyaskur, Tanbiyaskur Tomi Malik Ulin Nuha, Ulin Umi Lestari Umie Lestari Wahyu Anhar C Putra Wattiheluw, Siti Yayu Wijayati, Marini Yanal Hadid Yespus . Yonarta, Danang Yudha Galih Wibawa Yudhi Utomo Yudi Kurniawan YULISMAN Yulisman Yulisman Yulisman Yulisman Yulisman Yulisman