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Journal : Folia Medica Indonesiana

PHYLOGENETIC ANALYSIS AND ANTI MICROBIAL ACTIVITY OF Streptomyces spp. ISOLATED FROM COMPOST SOIL IN SURABAYA INDONESIA ON THE BASIS OF 16S Rrna GENE Kurnijasanti, R; Isnaeni, Isnaeni; AT, Poernomo; Sudjarwo, SA
Folia Medica Indonesiana Vol. 53 No. 3 (2017): September 2017
Publisher : Universitas Airlangga

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (105.296 KB) | DOI: 10.20473/fmi.v53i3.6456

Abstract

Eight isolates of Streptomyces sp. can be isolated from compost soil in Surabaya, Indonesia. The results of biochemical and morphological tests showed that the 8 isolates were new. Phylogenetic analysis was performed on the sequence of 16S rRNA gene. Nucleotide sequences of 16S rRNA gene Streptomyces sp. the compost soil isolates of Surabaya were analyzed and compared with the 16S rRNA gene sequence from the literature. Streptomyces sp. the compost soil of Surabaya based on the 16S rRNA gene showed the new species of Streptomyces. The result of phylogenetic tree diagram showed that Streptomyces Sp-D, Sp-Ep, Sp-G and Sp-I found in Bratang Surabaya compost house land were new isolates. Streptomyces Sp-Ep was a new type of Streptomyces closely related to Streptomyces indonesiasis and Streptomyces nashvillensis. Streptomyces Sp-Ea was Streptomyces olivoreticuli which was still related to Streptomyces yogyakartensis. Streptomyces Sp-F was Streptomyces levis strain NRRL B-24299. Streptomyces Sp-C was Streptomyces filamentosus. Streptomyces Sp-D was a new type of Streptomyces closely related to Streptomyces javensis and Streptomyces roseus. Streptomyces Sp-G was a new type of Streptomyces closely related to Streptomyces roseoviridis strain NBRC 12911 and Streptomyces thermocarboxydovorans strain AT52. Streptomyces Sp-I was a new streptomyces that was still closely related to Streptomyces cangkringensis and Streptomyces asiaticus. Streptomyces Sp-A was Streptomyces laurentii strain: LMG 19959.
Correlation between the Bacteriostatic and Bactericide Effect with Antibiofilm and Anticolony Spreading from Javanese Citronella Oil on Methicillin-Resistant Staphylococcus aureus (MRSA) Hidayah, Amaliyah Nurul; Wasito, Eddy Bagus; Debora, Kartuti; Basori, Achmad; Isnaeni, Isnaeni; Utomo, Budi
Folia Medica Indonesiana Vol. 55 No. 1 (2019): March
Publisher : Universitas Airlangga

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (294.474 KB) | DOI: 10.20473/fmi.v55i1.24277

Abstract

Methicillin-resistant Staphylococcus aureus (MRSA) is a pathogenic bacterium that has been resistant to various types of antibiotics, so it is not easy to be treated with antibiotics and needs other solutions. Javanese citronella oil distilled from the Cymbopogon nardus plant is proven to function as an antibacterial agent (bacteriostatic and bactericidal), fungicide and repellent. This study aimed to prove that there is a positive correlation between bacteriostatic and bactericidal effects with antibiofilm and anticolony spreading from Javanese citronella oil on MRSA. The intended antibiofilm is a barrier to biofilm formation and eradication. Bacteriostatic and antibiofilm effects were tested using microtiter plates assay, bactericidal effect test with subculture into the media and anticolony spreading effect test with spot inoculation in Tryptic Soy Broth media supplemented with 0.24% agar. The bacteriostatic effect test data were analyzed using paired t-test, bactericidal effect using the Friedman test, antibiofilm effect test using Kruskall-Wallis and the results of all the tests correlated using Pearson and Spearman correlation. The statistical significance used was p<0.05. The results showed that Javanese citronella oil had a bacteriostatic concentration of 0.02% (v/v) and bactericidal concentration of 0.78% (v/v). The Pearson correlation test showed that there was a negative correlation between bacteriostatic and bactericidal effects on biofilm formation with r = -0.956 (p = 0.000), but the correlation was positive for biofilm eradication with r = 0.918 (p = 0.000) and anticolony spreading with r = 1.000 (p = 0.000).
Co-Authors Abdillah, Roby Abdul Hamid Achmad Basori, Achmad Achmad Toto Poernomo Adi Fadli Adillah, Rifda Ahmad, Faozan Akhiruddin Maddu Al As'ary, Muawwal Alaih, Akhmad Futukhillah Fataba Ali Amran Ali Imran Alvina Violita Mulyanto Putri Alya Fakhirah Andhika Prima Prasetyo Anida Zulfa, Baiq Annisa Kartika Sari Anwar, Nazwa Zahira Ardiana, Alma Dita Ari Asnani As'ary, Muawwal Al Asiandi Asiandi, Asiandi Asri Darmawati As’ary, Muawwal Al AT, Poernomo Aty Widyawaruyanti Aulya Farah Fahreza Ayumuyas, Nur Palestin Ayuni, Nur Azizah, Mir’ah Azka, Aril Danish Azmi, Vania Amelia Azzahra, Chofifatus Solecha Azzalia Firdanthi Basyaruddin, Muh Budi Utomo Calvina, Aisha Bella Cassia, Diva Cholisoh, Lilis Dadan Hermawan, Dadan Dahlang Tahir Debi Yustisia, Wa Ode Deni Shidqi Khaerudini Deski Beri Dessidianti, Rachma Dewi Isadiartuti Dinda Annisya, Sukma Diyah, Nuzul Wahyuning Djoko Agus Purwanto Eddy Bagus Wasito Elfinita, Revi Elly Arliani Esti Hendradi Etik Wahyuningsih Fajarli Apriani M, Baiq Faradillah Rusliana Febrianti, Suhaemi Firna, Firna Fitri, Andi Fitri Geminastiti Sakkir H Hasmawati Hadi Poerwono Hadi, M. Warisul Haerunisa, Haerunisa Hakimi, Ahmad Reza Hamid, Muhammadin Hanistya, Ria Hardhienata, Hendradi hasani, riadhatul Hendrawan Hendrawan Heri Retnawati Hidayat, Rabiyatun Hidayati, Shabrina Wahyu I Gede Rekyadji Arimbawa Ibrahim, Mohamad Thorik Idha Kusumawati Ikhza Wafiyah, Evelyna Ikmawati, Isna Ita Sarmita Samad, Ita Sarmita Iwan Sugihartono Iyon Titok Sugiarto Julham Hukom Juliansyah, Irgi Zaini Kamaruddin, Harni Sartika Kana Hidayati Kartuti Debora, Kartuti Khairunnisa, Ayu Kholis Amalia Nofianti Kristianti, Rayi Kurnijasanti, R Larasati, Rini Lestari Widiantika, Susi Lestari, Ismira Wahyu Lewa, Ismira Wahyu Lestari Lisdayanti, Nur Lucky Anugrah, Riska Mahmudah, Rifaatul Maria Margaretha Suliyanti Martila, Lenny Intan Masmira, Ade Meiliningtyas, Crysuci Miladya, Nanda Fadlilatul Mirzautika, Anggita Mohar, Rahmat Setiawan Muhammad Pramudya Pangestu Mulyawan, Reynaldi Gilang Nafa Nazilatul Fatihah Ni Made Mertaniasih Nisa, Asriatun Nurhasanah, Wahidatun Dewi Nurhayati Nurhayati Nurrosyidah, Iif Hanifa Nursidik Yulianto Nursidik Yulianto, Nursidik Oktaviany Irma Wiputri Oudrey Addriana Paramita, Diajeng Putri Paramitha, Pradnia Permono Adi Putro Putri, Syakirah Yasmin R., Mantasiah Ramdani, Dewi Rippi Maya Riyaningrum, Wahyu Rusita, Resi Sambudi, Nonny Soraya Samlan, Karima Santosa, Nadya Rachmania Sari, Dewi Lintang Shiddiq, Muhandis Sholihattri, Wina Sholika Sari, Trisiyana Sigit Wibawanto, Sigit Siti Fatimah Soewoto, Haswi Purwandanu SRY WAHYUNI, SRY Suaebah, Evi Sudjarwo, SA Sudrajat, Aji Ajat Sugiarto, Iyon Titok Sukmawati, Rosnanda Sulaeman, Uyi Suryadi Suryadi Suryadini, Aisha Suci Susanto, I Gede Arya Sutarno Sutarno Talitha Nabilla Wijayanata Taufik Taufik Tejo Faridh Waloyo Tiam, Tan Swee Tiana, Elia Marta Triyono, Djoko Tulus Ikhsan Nasution Tutiek Purwanti Umi Aida Rohma Utami, Mega Putri Nur Wahyudi Wahyudi Wahyudi, Muh.Diki Wijoyo, Hadi Wildan Panji Tresna Wiwied Ekasari Yin, Shu Yuliati Herbani ZAINUL ARIFIN IMAM SUPARDI Zaskya Wati, Wa Ode Zulfa Diana Zulfiana, Risa