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Journal : scripta biologica

 1 
KERAGAMAN GENETIK VARIETAS PADI japonica DAN indica BERDASARKAN MARKA DNA TERKAIT MUTU RASA Puji Lestari; Reflinur Reflinur; Dody Dwi Handoko; Mastur Mastur
Scripta Biologica Vol 5, No 1 (2018)
Publisher : Fakultas Biologi | Universitas Jenderal Soedirman

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1172.405 KB) | DOI: 10.20884/1.sb.2018.5.1.751

Abstract

PCR-based markers and evaluation of physicochemical properties should be addressed for the improvement of rice varieties with good eating dan eating quality (EQ). This study aimed to examine the genetic diversity of rice varieties based on DNA markers related to physicochemical properties determining EQ. A total of 46 rice varieties consisting of 22 japonica varieties and 24 indica varieties were examined using 43 PCR-based markers. The results showed that polymorphic information content (PIC) ranged from 0.04 to 0.38, in support of genetic diversity indices which ranged from 0.04 to 0.50 across total markers. Pairwise genetic similarity matrix ranged from 0.40 to 0.98 with the closest genetic distance was observed between two japonica varieties (Dongjin and Hwaseong) and the most distant one was between japonica and indica (Onnuri/Manmi with Cigeulis/Fatmawati). The unweighted neighbor-joining tree clustered the rice varieties into two major clades, indica and japonica, and subsequent subclades were differentiating according to the individual genetic background. The genetic diversity of rice from different subspecies and DNA markers for EQ can effectively be utilized for basic information and marker-assisted selection (MAS) for the development of improved varieties with good EQ in rice breeding program.
Co-Authors . DJAJADI . HERIISTIANA . SYAFARUDDIN A. S. A. MURDIYATI AA Sudharmawan, AA Aat Atnikasari Agus Purwito Ahmad Adnan Ainur Rohimah Almas Ardiansyah Amalia Prihaningsih AMIN NUR Annisa Putri Alamsyah Anwar, Muhamad Ali Anwar, Muhamad Ali Anwar Apriani Putri Arin Khairunnisa, Arin Arsita Dewi, Ery ASADI Azhar Maulana Azmy, M. Noor Baehaqi Bahari, Anggri Septa Bambang Sugiantoro Bambang Sugiantoro Budi Santoso Budi Santoso Bulkaini (Bulkaini) Bunyamin Maftuh Catur Nugroho DALMADIYO, GEMBONG Dewi Nurma Yanti Ningtyas Dewi Sukma Dimas Yediya Satria Adiguna DJAJADI, . Djumali Djumali Djumali, Djumali Dody Dwi Handoko Dwi Budi Santoso DWI N. SUSILOWATI Dwi N. Susilowati Dwinita Wikan Utami Dzulfikar, Dzulfikar Edison HS Eka Fitriani Eko Binti Lestari, Eko Binti Encep Syarief Nurdin, Encep Syarief Endang Endang ENDANG GATI LESTARI Endang Gati Lestari Epsi Euriga Epsi Euriga Fadhil Ahla Firdaus Fahri Rijal Giffari Fajar Setianingrum , Rahmawati Famila Dwi Winati Fannia Rahadatul Aisy Farida Rahayu Farida Rahayu Fauziah Zahra Ash Shidiq Febrina, Fenny Uswati Feri irawan Fitria, Ina Fitriningdyah Tri Kadarwati Fitrotus S, Dewi Frasya Titranissa Gufron, Moh Habib Rijzaani Hafidz, Putra Hamsi Mansur Hanny Handiyani Hapsah, Hapsah Hartono Hartono I Gusti Komang Dana Arsana I Made Jana Mejaya I. Roostika Indramawan, Anik Intan Rahana Irwansya, Irwansya Istia Siti Amalia ISWARI S. DEWI ISWARI SARASWATI DEWI Karden Mulya Khairiyah, Dhea Kristianto Nugroho Kristianto Nugroho KRISTIANTO NUGROHO Kristianto Nugroho KRISTIANTO NUGROHO, KRISTIANTO Kuncoro, Fiki Wahyu Kurniawan, Yuniar Denny Latief, Jenny Lestari, Puji Linda Apriliani, Linda Lucky Nugroho M Ashari M. SYAKIR Magfiroh, Binti Latifatul Mamik Setyowati Mamik Setyowati, Mamik MARIA BINTANG Media Fitri Isma Nugraha Mia Kosmiatin MIFTAHOL ARIFIN, MIFTAHOL Mohamad Athar Monry Fraick Nicky Gillian Ratumbuysang Mubarok, Iqbal Muhamad Sabran Muhammad Farhan Muhammad Satrio Utomo MURDIYATI, A. S. Muskhairillah Salmy Nabila Noor Qisthani Nana Supriyana Nana Supriyana Nanang Rohimat Nanda Ardelya Ni Wayan Siti Nik Haryanti Nugrah Rekto Prabowo Nugraheni, Suminar Diyah Nugroho, Kristianto Nuning Artati Nur Fuad Nurmalasari, Yunita Nurul Hikmah NURWITA DEWI Parnidi Parnidi Parnidi, Parnidi Praharto, YB Prasetya, Adita Dwi Priatna Sasmita Puji Lestari Puji Lestari Puji Lestari Puji Lestari Puji Lestari Puji Lestari Purwaningdyah, Rosliana Puspitojati, Endah Putri, Isnah Faradiba Qinayyah Awaliyah Qomario RAGAPADMI PURNAMANENGSIH Rahma, Leily Vidya Rahmawati, Rahmawati Raudah Raudah REFLINUR REFLINUR Reflinur Reflinur Rerenstradika Tizar Terryana RERENSTRADIKA TIZAR TERRYANA Rerenstradika Tizar Terryana Reza Septianugraha Rossa Yunita ROSSA YUNITA Rossa Yunita Rosyidah Arafat, Rosyidah samiyono samsudin, ivan SANTOSO, BUDI Sativa, Risya Oriza Satyawan, Dani Sheli Mustikasari Dewi Siti Nurlaela Siti Nurlaela Sofwan Manaf Soim, Soim SUCI RAHAYU Sudiarto Sudiarto Sujono Sukmawati Sukmawati Suminar Diyah Nugraheni Supadi Supadi Suparman Suparman Supiyana, Nana Surya, Ananta Susanti Sufyadi Sutarno Sutarno SYAFARUDDIN, . Syaidatul Mukharomah SYAKIR, M. Tasma, I Made Titania Susandri Tohawi, Agus TRI JOKO SANTOSO Trijatmiko, Kurniawan R. Tris Sugiarto Tsalisah Halimatussadiah Umaeroh, Teli Rosma Ushwatun Khasanah Us’an, Us’an Utama, Agus Hadi Utari Praba Ningrum Utis Sutisna Utomo, Achmad Fauza Setyo Waldiono, Jenjang Warso Warso Warso Warso, Warso Yani, N. P. Mega Gena Yudi Sastro Yuli Dianto, Alfin Zainuddin, Zainuddin Zaki Ahmad Farid