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Journal : scripta biologica

 1 
KERAGAMAN GENETIK VARIETAS PADI japonica DAN indica BERDASARKAN MARKA DNA TERKAIT MUTU RASA Puji Lestari; Reflinur Reflinur; Dody Dwi Handoko; Mastur Mastur
Scripta Biologica Vol 5, No 1 (2018)
Publisher : Fakultas Biologi | Universitas Jenderal Soedirman

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1172.405 KB) | DOI: 10.20884/1.sb.2018.5.1.751

Abstract

PCR-based markers and evaluation of physicochemical properties should be addressed for the improvement of rice varieties with good eating dan eating quality (EQ). This study aimed to examine the genetic diversity of rice varieties based on DNA markers related to physicochemical properties determining EQ. A total of 46 rice varieties consisting of 22 japonica varieties and 24 indica varieties were examined using 43 PCR-based markers. The results showed that polymorphic information content (PIC) ranged from 0.04 to 0.38, in support of genetic diversity indices which ranged from 0.04 to 0.50 across total markers. Pairwise genetic similarity matrix ranged from 0.40 to 0.98 with the closest genetic distance was observed between two japonica varieties (Dongjin and Hwaseong) and the most distant one was between japonica and indica (Onnuri/Manmi with Cigeulis/Fatmawati). The unweighted neighbor-joining tree clustered the rice varieties into two major clades, indica and japonica, and subsequent subclades were differentiating according to the individual genetic background. The genetic diversity of rice from different subspecies and DNA markers for EQ can effectively be utilized for basic information and marker-assisted selection (MAS) for the development of improved varieties with good EQ in rice breeding program.
Co-Authors . DJAJADI . HERIISTIANA . SYAFARUDDIN A. S. A. MURDIYATI AA Sudharmawan, AA Aat Atnikasari Agus Purwito Ainur Rohimah Amalia Prihaningsih Andi Aziz Anwar, Muhamad Ali Anwar, Muhamad Ali Anwar Apriani Putri Arin Khairunnisa, Arin Arsita Dewi, Ery Azhar Maulana Azmy, M. Noor Baehaqi Bahari, Anggri Septa Bambang Sugiantoro Budi Santoso Budi Santoso Bulkaini (Bulkaini) Bunyamin Maftuh Catur Nugroho DALMADIYO, GEMBONG Dani Satyawan Dewi Sukma Dimas Yediya Satria Adiguna DJAJADI, . Djumali Djumali Djumali, Djumali Dody Dwi Handoko Dwi Budi Santoso DWI N. SUSILOWATI Dwi N. Susilowati Dwinita Wikan Utami Dyah, Rosliana Purwaning Dzulfikar, Dzulfikar Edison HS Eka Fitriani Eko Binti Lestari, Eko Binti Encep Syarief Nurdin, Encep Syarief Endang Gati Lestari Epsi Euriga Epsi Euriga Fadhil Ahla Firdaus Fajar Setianingrum , Rahmawati Famila Dwi Winati Farida Rahayu Farida Rahayu Febrina, Fenny Uswati Feri irawan Fitriningdyah Tri Kadarwati Fitrotus S, Dewi Gufron, Moh HABIB RIJZAANI Habib Rijzaani Hafidz, Putra Hamsi Mansur Hanny Handiyani Hapsah, Hapsah Hartono Hartono Hasan Hasan Hasim Abdul Jamil I Gusti Komang Dana Arsana I Made Jana Mejaya I Made Tasma I. Roostika Ina Fitria Ismarlin Indramawan, Anik Intan Rahana Irwansya, Irwansya Karden Mulya Khairiyah, Dhea Kristianto Nugroho Kristianto Nugroho Kristianto Nugroho KRISTIANTO NUGROHO, KRISTIANTO Kuncoro, Fiki Wahyu KUNTO WIBISONO Kurniawan, Yuniar Denny Latief, Jenny Lestari, Puji Linda Apriliani, Linda Lucky Nugroho Lukman Hakim M Ashari M. SYAKIR Magfiroh, Binti Latifatul Mamik Setyowati Mamik Setyowati, Mamik MARIA BINTANG Media Fitri Isma Nugraha Mia Kosmiatin MIFTAHOL ARIFIN, MIFTAHOL Mohamad Athar Monry Fraick Nicky Gillian Ratumbuysang Mubarok, Iqbal Muhamad Sabran Muhammad Farhan Mukharomah, Syaidatul MURDIYATI, A. S. Muskhairillah Salmy Nabila Noor Qisthani Nana Supriyana Nanda Ardelya Ni Wayan Siti Nik Haryanti Nugrah Rekto Prabowo Nugraheni, Suminar Diyah Nugroho, Kristianto Nuning Artati Nur Fuad Nurmalasari, Yunita Parnidi Parnidi Parnidi, Parnidi Praharto, YB Prasetya, Adita Dwi Priatna Sasmita Puji Lestari Puji Lestari Puji Lestari Puji Lestari PUJI LESTARI Puji Lestari Purwaningdyah, Rosliana Purwanto, Oky Dwi Puspitojati, Endah Putri, Isnah Faradiba Qomario Rahma, Leily Vidya Rahmawati, Rahmawati Raudah Raudah Reflinur Reflinur REFLINUR REFLINUR Rerenstradika Tizar Terryana Rerenstradika Tizar Terryana Rossa Yunita Rosyidah Arafat, Rosyidah Salsabela, Yuliyana samiyono samsudin, ivan SANTOSO, BUDI Sativa, Risya Oriza Satyawan, Dani Siti Nurlaela Siti Nurlaela Sofwan Manaf Soim, Soim Sudiarto Sudiarto Suhendar, Ace Sukmawati Sukmawati Suminar Diyah Nugraheni Suniati, Suniati Suparjo Suparman Suparman Supiyana, Nana Surya, Ananta Susanti Sufyadi Sutarno Sutarno SYAFARUDDIN, . SYAKIR, M. Tasma, I Made Tohawi, Agus TRI JOKO SANTOSO Trijatmiko, Kurniawan R. Tris Sugiarto Umaeroh, Teli Rosma Umar Umar Us’an, Us’an Utama, Agus Hadi Utari Praba Ningrum Utari, Ratna Utis Sutisna Utomo, Achmad Fauza Setyo Waldiono, Jenjang Warso Warso, Warso Witjaksono Witjaksono Yani, N. P. Mega Gena Yudi Sastro Yuli Dianto, Alfin Zainuddin, Zainuddin Zaki Ahmad Farid