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Journal : ANNALES BOGORIENSES

Isolation and Characterization of OsNAC6 cDNA from Rice (Oryza sativa L.) cv. Nipponbare, Batutegi, and Rojolele Rachmat, Agus; Nugroho, Satya; Nurdiani, Dini; Swastika, Maria; Sukma, Dewi; Aswidinnoor, Hajrial; Sudarsono, Sudarsono
ANNALES BOGORIENSES Vol 18, No 2 (2014): Annales Bogorienses
Publisher : Research Center for Biotechnology - Indonesian Institute of Sciences (LIPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1372.433 KB) | DOI: 10.1234/100

Abstract

Transcription factors have an important function in regulating gene expression and plant responses to stresses. The ERF, bZIP, WRKY, MYB, and NAC are stress inducible transcription factors. The OsNAC6 is a member of the NAC transcription factor family in rice and its expression is induced by abiotic stresses, wounding and blast disease. Characterization of OsNAC6 gene sequences would give a better undersanding on how OsNAC gene functions biologically. The objectives of this research are to isolate the OsNAC6 cDNA from Nipponbare, Batutegi, and Rojolele cultivars, to characterize their DNA sequences, and to compare their sequences to other NAC genes from other plants available in GenBank DNA databases. Isolated cDNA and sequencing of the fragments resulted in a 912 bp DNA sequences. Translation of the sequences yielded a protein consisted of 303 amino acid residue. Blast analysis of amino acid sequences indicated identity of isolated cDNA from three Indonesian rice cultivars are the OsNAC6 gene. Deduced amino acid residues from amplified cDNAs of Nipponbare, Batutegi, and Rojolele cultivars shared 100% sequence identities to rice OsNAC6 (Acc. # BAA89800), 71-100% sequence identity to a number of OsNAC protein from Oryza sativa and 63-83% sequence identity to NAC protein from other plants.
Isolation and Characterization of OsNAC6 cDNA from Rice (Oryza sativa L.) cv. Nipponbare, Batutegi, and Rojolele Agus Rachmat; Satya Nugroho; Dini Nurdiani; Maria Swastika; Dewi Sukma; Hajrial Aswidinnoor; Sudarsono Sudarsono
ANNALES BOGORIENSES Vol 18, No 2 (2014): Annales Bogorienses
Publisher : Research Center for Biotechnology - Indonesian Institute of Sciences (LIPI)

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1372.433 KB) | DOI: 10.14203/ann.bogor.2014.v18.n2.45-55

Abstract

Transcription factors have an important function in regulating gene expression and plant responses to stresses. The ERF, bZIP, WRKY, MYB, and NAC are stress inducible transcription factors. The OsNAC6 is a member of the NAC transcription factor family in rice and its expression is induced by abiotic stresses, wounding and blast disease. Characterization of OsNAC6 gene sequences would give a better undersanding on how OsNAC gene functions biologically. The objectives of this research are to isolate the OsNAC6 cDNA from Nipponbare, Batutegi, and Rojolele cultivars, to characterize their DNA sequences, and to compare their sequences to other NAC genes from other plants available in GenBank DNA databases. Isolated cDNA and sequencing of the fragments resulted in a 912 bp DNA sequences. Translation of the sequences yielded a protein consisted of 303 amino acid residue. Blast analysis of amino acid sequences indicated identity of isolated cDNA from three Indonesian rice cultivars are the OsNAC6 gene. Deduced amino acid residues from amplified cDNAs of Nipponbare, Batutegi, and Rojolele cultivars shared 100% sequence identities to rice OsNAC6 (Acc. # BAA89800), 71-100% sequence identity to a number of OsNAC protein from Oryza sativa and 63-83% sequence identity to NAC protein from other plants.
Co-Authors , Krisantini , Nazi , Rustikawati ,, Giyanto ABDUL MUNIF Abdullah bin Arif Adil Akbar Muhammad Adimas Krishardianto Affif Andra Saputro Agus Purwito Agus Rachmat Agus Rachmat Ahmad Bukhori, Ahmad Ahmad Fathoni Aji, Titistyas Gusti Akbar, Machmul Alam Sani, Fajri Ali Husni Alvianti Yaufa Desita Alwi, Ahmad Andi Zahira Al Humairoh Andri, Eldrida Antony Demas Apriliani, Elisa Aqilla Fadia Wahono Arifah Rahayu Arrin Rosmala Ary Setiawati Assyifa Fauzia Atra Romeida Azmi, Tubagus Kiki Kawakibi Budi Marwoto Chaireni Martasari Cici Tresniawati Daffa Rafiandra Haryono Daulay, Delfina Deden Derajat Matra Deden Sukmajaya Demas, Antony Dewa Ngurah Suprapta DINI NURDIANI Dini Nurdiani Dirga, Kate Tiffany Dodi Saputra, Muhammad Dwi Utami Nur Usmani Efendi, Darda Eka Martha Della Rahayu Elina, Juanita Elis Nina Herliyana Elizabeth Handini ELSJE T. TENDA ELSJE T. TENDA, ELSJE T. ENNY RANDRIANI Erick Raynalta Erick Raynalta, Erick Erna Sulistiana Erna Sulistiana Fadillah, Anggun Fajar Pangestu Fauziah, Ni'mah Fuady Dharma Harahap, Andes Giyanto, dan Gustaaf Adolf Wattimena HAJRIAL ASWIDINNOOR Halimatussakdiyah, Halimatussakdiyah Handini, Aline Sisi Hasibuan, Nadia Hengky Novarianto Hengky Novarianto HENGKY NOVARIANTO Hermanto, Catur Hidayatullah, Deden Husein Nst, Ahmad I MADE ARTIKA Ika Roostika Indira Ariesta Ira Fauziah Noer Irawati Irawati ISMAIL MASKROMO Ismail Maskromo Ismail Maskromo Isnaini Harahap, Fitri Iswari S. Dewi Juang Gema Kartika Kartiman, Roni Kartiman, Roni Khoiruddin Khoiruddin Khoiuruddin, Khoiruddin Krishardianto, Adimas KRISTIANTO NUGROHO, KRISTIANTO Kultsum, Fifit Lestari Koto, Putri Lolliani Lubis, Uchti Nuzul Qhinanti M. Syukur Maria Swastika Maryuandini, Ufi MASKROMO, ISMAIL MASKROMO, ISMAIL Mastur Mastur Megawati, Gina MEITY A. TULALO MEITY A. TULALO, MEITY A. Mia Kosmiatin Mira Humaira Muhamad Rizal Martua Damanik Muhamad Syukur Muhammad Hamzah Aditama Muhammad Syukur Muhammad Syukur Muthi'ah Khairun Nisa Muthi’ah Khairun Nisa Nabilah, Noorfakhriyah Ahsanti Nasution, Fery Endang Ni'mah Fauziah Noer, Ira Fauziah NOVARIANTO, HENGKY NOVARIANTO, HENGKY Nur Ajijah NUR AJIJAH Nurul Khumaida OKTA ROSFIANI Pebra Heriansyah Pratama, Syilvia Nosya PUJI LESTARI Pulungan, Darmasyah Pulungan, Nurpadilah Putri, Astrid Aditya Putri, Halida Adistya Putri, Yane Riana Rahmawati, Rika Sri rawati ,, rawati Refa Firgiyanto REFLINUR REFLINUR Risda Rizkillah, Risda Riski Ananda, Ihwan Rizal, Syamsi Roedhy Poerwanto RUBIYO RUBIYO Rusmiyati, Henny S. Sudarsono Sachio, Sachio Safri Hasibuan, Iskandar Saidah, Marwatu Sandi, Gunawan Sandra A. Aziz Sandra Arifin Aziz Sari, Novila Satya Nugroho Satya Nugroho Sauri Nasution, Sofyan Shandra Amarilis Shandra Amarillis Siberakuno, Roberdi Sihombing, Novi Silviyani Siregar, Sindi Simatupang, Juli Simatupang, Juliana Sintho Wahyuning Ardie Siti Salamah Slamet Susanto Sormin, Darlina Sudarsono Sudarsono Sudarsono Sudarsono SUDARSONO SUDARSONO SUDARSONO SUDARSONO Sudarsono, dan SUDARSONO, nFn SUDARSONO, nFn Sudarsono, Sudarsono Sugianto, Pingkan Sukendah SUKENDAH SUKENDAH SUKENDAH SUKENDAH, SUKENDAH SUKENDAH, nFn SUKENDAH, nFn Sukmana, Bayu Surjono Hadi Sutjahjo Suryo Wiyono Suskandari Kartikaningrum Sutanto, Agus Swastika, Maria Swastika, Maria Syarifah Iis Aisyah Syilvia Nosya Pratama Tony Liwang TRI JOKO SANTOSO Tya Wulandari Ucu Sumirat Wahyu Arif Sudarsono Wahyu Arif Sudarsono Waras Nurcholis Willy Bayuardi Suwarno Yafqori Ardigusa Yasmin, Zahra Fadhlia Yoshua Shandy Yudha Yudhi, Joshinjitsu Fatirizqina Yustia Yulianti Zahra Fadhlia Yasmin